Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10125

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_10115 and hemJ are separated by 83 nucleotideshemJ and glnD are separated by 61 nucleotidesglnD and map are separated by 129 nucleotides OKGIIK_10115: OKGIIK_10115 - Capsular biosynthesis protein CpsI, at 2,181,438 to 2,182,442 _10115 OKGIIK_10120: hemJ - Uncharacterised protein family (UPF0093), at 2,182,526 to 2,182,975 hemJ OKGIIK_10125: glnD - [protein-PII] uridylyltransferase, at 2,183,037 to 2,185,679 glnD OKGIIK_10130: map - type I methionyl aminopeptidase, at 2,185,809 to 2,186,573 map Position (kb) 2183 2184 2185 2186Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2182.432 kb on - strandat 2182.432 kb on - strandat 2182.432 kb on - strandat 2182.434 kb on + strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.435 kb on - strandat 2182.447 kb on + strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.448 kb on - strandat 2182.484 kb on + strandat 2182.484 kb on + strandat 2182.484 kb on + strandat 2182.484 kb on + strandat 2182.485 kb on - strandat 2182.485 kb on - strandat 2182.515 kb on + strandat 2182.515 kb on + strandat 2182.515 kb on + strandat 2182.515 kb on + strandat 2182.515 kb on + strandat 2182.515 kb on + strandat 2182.516 kb on - strandat 2182.516 kb on - strandat 2182.522 kb on + strandat 2182.522 kb on + strandat 2182.522 kb on + strandat 2182.522 kb on + strandat 2182.523 kb on - strandat 2183.019 kb on + strandat 2183.020 kb on - strandat 2183.020 kb on - strandat 2183.020 kb on - strandat 2185.064 kb on - strand, within glnDat 2185.064 kb on - strand, within glnDat 2185.064 kb on - strand, within glnDat 2185.064 kb on - strand, within glnDat 2185.124 kb on - strand, within glnDat 2185.659 kb on + strandat 2185.659 kb on + strandat 2185.659 kb on + strandat 2185.659 kb on + strandat 2185.659 kb on + strandat 2185.660 kb on - strandat 2185.660 kb on - strandat 2185.660 kb on - strandat 2185.660 kb on - strandat 2186.588 kb on - strandat 2186.588 kb on - strandat 2186.588 kb on - strandat 2186.588 kb on - strandat 2186.588 kb on - strandat 2186.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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2,182,432 - -0.7
2,182,432 - -1.9
2,182,432 - +0.9
2,182,434 + -0.7
2,182,435 - -0.2
2,182,435 - +0.2
2,182,435 - +0.3
2,182,435 - -0.2
2,182,435 - -1.2
2,182,435 - -1.4
2,182,435 - +1.7
2,182,435 - -0.6
2,182,435 - -0.4
2,182,435 - +0.4
2,182,435 - +0.1
2,182,447 + +1.2
2,182,448 - +1.1
2,182,448 - -0.5
2,182,448 - -0.8
2,182,448 - +0.8
2,182,448 - -1.2
2,182,448 - -1.4
2,182,448 - +0.2
2,182,448 - +1.0
2,182,448 - -0.9
2,182,448 - +0.6
2,182,448 - +0.1
2,182,448 - -1.1
2,182,448 - -0.4
2,182,484 + +0.2
2,182,484 + -0.2
2,182,484 + -1.9
2,182,484 + -1.6
2,182,485 - +0.5
2,182,485 - -0.2
2,182,515 + -1.7
2,182,515 + -1.3
2,182,515 + +0.4
2,182,515 + +0.3
2,182,515 + -1.8
2,182,515 + +1.8
2,182,516 - -0.5
2,182,516 - -1.4
2,182,522 + -0.9
2,182,522 + +0.8
2,182,522 + +0.2
2,182,522 + +0.2
2,182,523 - +0.8
2,183,019 + +0.2
2,183,020 - +0.2
2,183,020 - +0.4
2,183,020 - +1.4
2,185,064 - glnD OKGIIK_10125 0.77 -1.4
2,185,064 - glnD OKGIIK_10125 0.77 -0.2
2,185,064 - glnD OKGIIK_10125 0.77 -0.1
2,185,064 - glnD OKGIIK_10125 0.77 -0.8
2,185,124 - glnD OKGIIK_10125 0.79 -0.4
2,185,659 + -0.0
2,185,659 + -0.4
2,185,659 + -2.9
2,185,659 + -1.1
2,185,659 + -0.8
2,185,660 - +0.8
2,185,660 - -2.4
2,185,660 - -0.8
2,185,660 - +1.2
2,186,588 - -0.8
2,186,588 - +0.7
2,186,588 - -0.6
2,186,588 - -0.8
2,186,588 - +0.1
2,186,588 - -0.2

Or see this region's nucleotide sequence