Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt murJ and rpsT are separated by 234 nucleotides rpsT and OKGIIK_09310 are separated by 147 nucleotides OKGIIK_09310 and feoB overlap by 4 nucleotides
OKGIIK_09300: murJ - murein biosynthesis integral membrane protein MurJ, at 2,020,057 to 2,021,667
murJ
OKGIIK_09305: rpsT - 30S ribosomal protein S20, at 2,021,902 to 2,022,165
rpsT
OKGIIK_09310: OKGIIK_09310 - DUF6587 domain-containing protein, at 2,022,313 to 2,022,615
_09310
OKGIIK_09315: feoB - ferrous iron transport protein B, at 2,022,612 to 2,024,447
feoB
Position (kb)
2022
2023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2021.712 kb on - strand at 2021.712 kb on - strand at 2021.712 kb on - strand at 2021.712 kb on - strand at 2021.712 kb on - strand at 2021.761 kb on - strand at 2021.761 kb on - strand at 2022.164 kb on - strand at 2022.164 kb on - strand at 2022.164 kb on - strand at 2022.164 kb on - strand at 2022.256 kb on + strand at 2022.256 kb on + strand at 2022.256 kb on + strand at 2022.256 kb on + strand at 2022.256 kb on + strand at 2022.256 kb on + strand at 2022.574 kb on + strand, within OKGIIK_09310 at 2022.574 kb on + strand, within OKGIIK_09310 at 2022.574 kb on + strand, within OKGIIK_09310 at 2022.574 kb on + strand, within OKGIIK_09310 at 2022.574 kb on + strand, within OKGIIK_09310 at 2022.575 kb on - strand, within OKGIIK_09310 at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.590 kb on + strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.591 kb on - strand at 2022.637 kb on + strand at 2022.637 kb on + strand at 2022.637 kb on + strand at 2022.637 kb on + strand at 2022.638 kb on - strand at 2022.638 kb on - strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.658 kb on + strand at 2022.659 kb on - strand at 2022.659 kb on - strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.676 kb on + strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.677 kb on - strand at 2022.757 kb on + strand at 2022.758 kb on - strand at 2022.850 kb on + strand, within feoB at 2022.850 kb on + strand, within feoB at 2022.850 kb on + strand, within feoB at 2022.850 kb on + strand, within feoB at 2022.851 kb on - strand, within feoB at 2022.851 kb on - strand, within feoB at 2022.851 kb on - strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.949 kb on + strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.950 kb on - strand, within feoB at 2022.970 kb on + strand, within feoB at 2022.970 kb on + strand, within feoB at 2022.970 kb on + strand, within feoB at 2022.970 kb on + strand, within feoB at 2022.971 kb on - strand, within feoB at 2022.971 kb on - strand, within feoB at 2022.971 kb on - strand, within feoB at 2022.985 kb on + strand, within feoB at 2022.985 kb on + strand, within feoB at 2022.986 kb on - strand, within feoB at 2022.986 kb on - strand, within feoB at 2022.986 kb on - strand, within feoB at 2022.986 kb on - strand, within feoB at 2023.108 kb on + strand, within feoB at 2023.108 kb on + strand, within feoB at 2023.108 kb on + strand, within feoB at 2023.108 kb on + strand, within feoB at 2023.109 kb on - strand, within feoB at 2023.109 kb on - strand, within feoB at 2023.109 kb on - strand, within feoB at 2023.109 kb on - strand, within feoB at 2023.109 kb on - strand, within feoB at 2023.147 kb on + strand, within feoB at 2023.148 kb on - strand, within feoB at 2023.148 kb on - strand, within feoB at 2023.148 kb on - strand, within feoB at 2023.246 kb on + strand, within feoB at 2023.246 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.247 kb on - strand, within feoB at 2023.294 kb on + strand, within feoB at 2023.294 kb on + strand, within feoB at 2023.294 kb on + strand, within feoB at 2023.294 kb on + strand, within feoB at 2023.295 kb on - strand, within feoB at 2023.295 kb on - strand, within feoB at 2023.295 kb on - strand, within feoB at 2023.330 kb on + strand, within feoB at 2023.330 kb on + strand, within feoB at 2023.330 kb on + strand, within feoB at 2023.330 kb on + strand, within feoB at 2023.330 kb on + strand, within feoB at 2023.330 kb on + strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.331 kb on - strand, within feoB at 2023.406 kb on + strand, within feoB at 2023.406 kb on + strand, within feoB at 2023.406 kb on + strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.407 kb on - strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.409 kb on + strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.410 kb on - strand, within feoB at 2023.531 kb on + strand, within feoB at 2023.531 kb on + strand, within feoB at 2023.531 kb on + strand, within feoB at 2023.532 kb on - strand, within feoB
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 2,021,712 - -1.0 2,021,712 - -0.5 2,021,712 - -1.6 2,021,712 - -1.4 2,021,712 - +0.4 2,021,761 - -2.3 2,021,761 - -1.1 2,022,164 - -1.4 2,022,164 - +0.0 2,022,164 - +0.4 2,022,164 - +0.2 2,022,256 + +0.2 2,022,256 + -0.5 2,022,256 + -0.8 2,022,256 + -1.2 2,022,256 + -1.2 2,022,256 + +1.2 2,022,574 + OKGIIK_09310 0.86 -2.2 2,022,574 + OKGIIK_09310 0.86 +0.1 2,022,574 + OKGIIK_09310 0.86 -1.2 2,022,574 + OKGIIK_09310 0.86 -0.1 2,022,574 + OKGIIK_09310 0.86 -0.9 2,022,575 - OKGIIK_09310 0.86 -1.6 2,022,590 + +1.7 2,022,590 + -1.2 2,022,590 + -0.4 2,022,590 + -0.2 2,022,590 + +0.4 2,022,590 + +2.5 2,022,590 + -0.1 2,022,590 + +1.5 2,022,590 + +1.5 2,022,590 + -0.7 2,022,590 + -1.4 2,022,590 + -0.1 2,022,590 + +1.2 2,022,590 + -0.6 2,022,590 + +0.3 2,022,590 + -1.7 2,022,590 + +0.2 2,022,590 + -1.5 2,022,590 + +1.0 2,022,590 + -0.5 2,022,590 + +2.0 2,022,590 + +0.2 2,022,591 - -0.4 2,022,591 - -0.6 2,022,591 - -1.6 2,022,591 - +1.7 2,022,591 - -0.7 2,022,591 - -0.4 2,022,591 - +1.6 2,022,591 - -1.5 2,022,591 - -0.7 2,022,591 - +1.5 2,022,591 - -1.1 2,022,591 - +0.3 2,022,591 - -0.2 2,022,591 - -0.1 2,022,591 - -0.4 2,022,591 - -0.8 2,022,591 - -2.4 2,022,637 + +0.6 2,022,637 + +1.2 2,022,637 + +0.2 2,022,637 + -1.2 2,022,638 - -1.2 2,022,638 - -0.1 2,022,658 + +0.4 2,022,658 + +0.8 2,022,658 + +0.7 2,022,658 + -0.1 2,022,658 + -0.5 2,022,658 + +0.9 2,022,658 + +0.7 2,022,659 - -0.1 2,022,659 - +1.8 2,022,676 + +0.3 2,022,676 + -1.2 2,022,676 + -0.4 2,022,676 + -1.4 2,022,676 + -0.4 2,022,676 + +2.5 2,022,676 + -0.1 2,022,676 + +0.2 2,022,677 - -0.4 2,022,677 - -0.4 2,022,677 - -1.1 2,022,677 - +1.7 2,022,677 - -1.2 2,022,677 - -0.2 2,022,677 - +0.2 2,022,677 - -0.1 2,022,677 - +1.3 2,022,677 - -0.1 2,022,677 - +0.3 2,022,677 - +1.1 2,022,757 + -1.0 2,022,758 - +0.3 2,022,850 + feoB OKGIIK_09315 0.13 -2.1 2,022,850 + feoB OKGIIK_09315 0.13 -0.8 2,022,850 + feoB OKGIIK_09315 0.13 -0.1 2,022,850 + feoB OKGIIK_09315 0.13 +0.2 2,022,851 - feoB OKGIIK_09315 0.13 +1.2 2,022,851 - feoB OKGIIK_09315 0.13 -0.8 2,022,851 - feoB OKGIIK_09315 0.13 +0.2 2,022,949 + feoB OKGIIK_09315 0.18 -1.5 2,022,949 + feoB OKGIIK_09315 0.18 +0.2 2,022,949 + feoB OKGIIK_09315 0.18 -1.4 2,022,949 + feoB OKGIIK_09315 0.18 -0.9 2,022,949 + feoB OKGIIK_09315 0.18 -1.9 2,022,949 + feoB OKGIIK_09315 0.18 +1.6 2,022,949 + feoB OKGIIK_09315 0.18 -1.0 2,022,949 + feoB OKGIIK_09315 0.18 -0.2 2,022,949 + feoB OKGIIK_09315 0.18 -0.8 2,022,950 - feoB OKGIIK_09315 0.18 -1.1 2,022,950 - feoB OKGIIK_09315 0.18 -0.8 2,022,950 - feoB OKGIIK_09315 0.18 +0.1 2,022,950 - feoB OKGIIK_09315 0.18 +1.2 2,022,950 - feoB OKGIIK_09315 0.18 +0.3 2,022,950 - feoB OKGIIK_09315 0.18 -0.5 2,022,950 - feoB OKGIIK_09315 0.18 +1.2 2,022,950 - feoB OKGIIK_09315 0.18 +0.2 2,022,950 - feoB OKGIIK_09315 0.18 +0.3 2,022,950 - feoB OKGIIK_09315 0.18 -0.1 2,022,950 - feoB OKGIIK_09315 0.18 +0.2 2,022,950 - feoB OKGIIK_09315 0.18 -1.0 2,022,950 - feoB OKGIIK_09315 0.18 -0.1 2,022,970 + feoB OKGIIK_09315 0.19 +0.8 2,022,970 + feoB OKGIIK_09315 0.19 -0.7 2,022,970 + feoB OKGIIK_09315 0.19 -0.1 2,022,970 + feoB OKGIIK_09315 0.19 -2.5 2,022,971 - feoB OKGIIK_09315 0.20 -0.1 2,022,971 - feoB OKGIIK_09315 0.20 -1.5 2,022,971 - feoB OKGIIK_09315 0.20 +0.9 2,022,985 + feoB OKGIIK_09315 0.20 +0.2 2,022,985 + feoB OKGIIK_09315 0.20 +1.5 2,022,986 - feoB OKGIIK_09315 0.20 +1.4 2,022,986 - feoB OKGIIK_09315 0.20 -1.5 2,022,986 - feoB OKGIIK_09315 0.20 -1.2 2,022,986 - feoB OKGIIK_09315 0.20 +1.3 2,023,108 + feoB OKGIIK_09315 0.27 +0.2 2,023,108 + feoB OKGIIK_09315 0.27 -1.1 2,023,108 + feoB OKGIIK_09315 0.27 -0.1 2,023,108 + feoB OKGIIK_09315 0.27 -0.9 2,023,109 - feoB OKGIIK_09315 0.27 +1.5 2,023,109 - feoB OKGIIK_09315 0.27 +0.1 2,023,109 - feoB OKGIIK_09315 0.27 +1.9 2,023,109 - feoB OKGIIK_09315 0.27 -0.6 2,023,109 - feoB OKGIIK_09315 0.27 +0.9 2,023,147 + feoB OKGIIK_09315 0.29 -0.3 2,023,148 - feoB OKGIIK_09315 0.29 -0.3 2,023,148 - feoB OKGIIK_09315 0.29 +0.8 2,023,148 - feoB OKGIIK_09315 0.29 +0.9 2,023,246 + feoB OKGIIK_09315 0.35 +1.4 2,023,246 - feoB OKGIIK_09315 0.35 -0.6 2,023,247 - feoB OKGIIK_09315 0.35 +1.1 2,023,247 - feoB OKGIIK_09315 0.35 -0.1 2,023,247 - feoB OKGIIK_09315 0.35 -1.9 2,023,247 - feoB OKGIIK_09315 0.35 +0.4 2,023,247 - feoB OKGIIK_09315 0.35 +0.2 2,023,247 - feoB OKGIIK_09315 0.35 +0.2 2,023,247 - feoB OKGIIK_09315 0.35 +0.6 2,023,247 - feoB OKGIIK_09315 0.35 -0.5 2,023,247 - feoB OKGIIK_09315 0.35 -0.1 2,023,294 + feoB OKGIIK_09315 0.37 +1.6 2,023,294 + feoB OKGIIK_09315 0.37 +1.4 2,023,294 + feoB OKGIIK_09315 0.37 +0.6 2,023,294 + feoB OKGIIK_09315 0.37 -0.8 2,023,295 - feoB OKGIIK_09315 0.37 -0.6 2,023,295 - feoB OKGIIK_09315 0.37 +0.6 2,023,295 - feoB OKGIIK_09315 0.37 -1.1 2,023,330 + feoB OKGIIK_09315 0.39 -1.8 2,023,330 + feoB OKGIIK_09315 0.39 -2.4 2,023,330 + feoB OKGIIK_09315 0.39 +0.6 2,023,330 + feoB OKGIIK_09315 0.39 -1.7 2,023,330 + feoB OKGIIK_09315 0.39 -1.9 2,023,330 + feoB OKGIIK_09315 0.39 +0.2 2,023,331 - feoB OKGIIK_09315 0.39 +0.3 2,023,331 - feoB OKGIIK_09315 0.39 +0.5 2,023,331 - feoB OKGIIK_09315 0.39 -2.0 2,023,331 - feoB OKGIIK_09315 0.39 -2.0 2,023,331 - feoB OKGIIK_09315 0.39 -0.0 2,023,331 - feoB OKGIIK_09315 0.39 +1.8 2,023,331 - feoB OKGIIK_09315 0.39 +0.8 2,023,331 - feoB OKGIIK_09315 0.39 +0.1 2,023,331 - feoB OKGIIK_09315 0.39 -1.5 2,023,331 - feoB OKGIIK_09315 0.39 +2.2 2,023,331 - feoB OKGIIK_09315 0.39 -0.1 2,023,331 - feoB OKGIIK_09315 0.39 +1.0 2,023,406 + feoB OKGIIK_09315 0.43 -1.3 2,023,406 + feoB OKGIIK_09315 0.43 +0.6 2,023,406 + feoB OKGIIK_09315 0.43 +2.4 2,023,407 - feoB OKGIIK_09315 0.43 -2.0 2,023,407 - feoB OKGIIK_09315 0.43 -1.0 2,023,407 - feoB OKGIIK_09315 0.43 +1.5 2,023,407 - feoB OKGIIK_09315 0.43 +0.2 2,023,407 - feoB OKGIIK_09315 0.43 -1.0 2,023,407 - feoB OKGIIK_09315 0.43 -1.4 2,023,407 - feoB OKGIIK_09315 0.43 +1.2 2,023,407 - feoB OKGIIK_09315 0.43 -1.9 2,023,409 + feoB OKGIIK_09315 0.43 -0.9 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,409 + feoB OKGIIK_09315 0.43 +0.4 2,023,409 + feoB OKGIIK_09315 0.43 -1.0 2,023,409 + feoB OKGIIK_09315 0.43 -0.7 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,409 + feoB OKGIIK_09315 0.43 +0.2 2,023,409 + feoB OKGIIK_09315 0.43 -0.4 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,409 + feoB OKGIIK_09315 0.43 -0.4 2,023,409 + feoB OKGIIK_09315 0.43 +0.8 2,023,409 + feoB OKGIIK_09315 0.43 -0.4 2,023,409 + feoB OKGIIK_09315 0.43 +0.9 2,023,409 + feoB OKGIIK_09315 0.43 -0.2 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,409 + feoB OKGIIK_09315 0.43 +0.3 2,023,409 + feoB OKGIIK_09315 0.43 -1.6 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,409 + feoB OKGIIK_09315 0.43 +0.6 2,023,409 + feoB OKGIIK_09315 0.43 -0.7 2,023,409 + feoB OKGIIK_09315 0.43 -0.1 2,023,410 - feoB OKGIIK_09315 0.43 -0.4 2,023,410 - feoB OKGIIK_09315 0.43 -1.6 2,023,410 - feoB OKGIIK_09315 0.43 -0.1 2,023,410 - feoB OKGIIK_09315 0.43 +1.4 2,023,410 - feoB OKGIIK_09315 0.43 -0.9 2,023,410 - feoB OKGIIK_09315 0.43 +0.7 2,023,410 - feoB OKGIIK_09315 0.43 -0.6 2,023,410 - feoB OKGIIK_09315 0.43 +0.6 2,023,410 - feoB OKGIIK_09315 0.43 +0.2 2,023,410 - feoB OKGIIK_09315 0.43 -0.7 2,023,410 - feoB OKGIIK_09315 0.43 -0.2 2,023,410 - feoB OKGIIK_09315 0.43 +0.9 2,023,410 - feoB OKGIIK_09315 0.43 -0.1 2,023,410 - feoB OKGIIK_09315 0.43 -0.9 2,023,531 + feoB OKGIIK_09315 0.50 -1.6 2,023,531 + feoB OKGIIK_09315 0.50 -0.5 2,023,531 + feoB OKGIIK_09315 0.50 +1.1 2,023,532 - feoB OKGIIK_09315 0.50 -0.4
Or see this region's nucleotide sequence