Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09310

Experiment: R2A_PIPES with Cadmium chloride 128 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmurJ and rpsT are separated by 234 nucleotidesrpsT and OKGIIK_09310 are separated by 147 nucleotidesOKGIIK_09310 and feoB overlap by 4 nucleotides OKGIIK_09300: murJ - murein biosynthesis integral membrane protein MurJ, at 2,020,057 to 2,021,667 murJ OKGIIK_09305: rpsT - 30S ribosomal protein S20, at 2,021,902 to 2,022,165 rpsT OKGIIK_09310: OKGIIK_09310 - DUF6587 domain-containing protein, at 2,022,313 to 2,022,615 _09310 OKGIIK_09315: feoB - ferrous iron transport protein B, at 2,022,612 to 2,024,447 feoB Position (kb) 2022 2023Strain fitness (log2 ratio) -2 -1 0 1 2at 2021.712 kb on - strandat 2021.712 kb on - strandat 2021.712 kb on - strandat 2021.712 kb on - strandat 2021.712 kb on - strandat 2021.761 kb on - strandat 2021.761 kb on - strandat 2022.164 kb on - strandat 2022.164 kb on - strandat 2022.164 kb on - strandat 2022.164 kb on - strandat 2022.256 kb on + strandat 2022.256 kb on + strandat 2022.256 kb on + strandat 2022.256 kb on + strandat 2022.256 kb on + strandat 2022.256 kb on + strandat 2022.574 kb on + strand, within OKGIIK_09310at 2022.574 kb on + strand, within OKGIIK_09310at 2022.574 kb on + strand, within OKGIIK_09310at 2022.574 kb on + strand, within OKGIIK_09310at 2022.574 kb on + strand, within OKGIIK_09310at 2022.575 kb on - strand, within OKGIIK_09310at 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.590 kb on + strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.591 kb on - strandat 2022.637 kb on + strandat 2022.637 kb on + strandat 2022.637 kb on + strandat 2022.637 kb on + strandat 2022.638 kb on - strandat 2022.638 kb on - strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.658 kb on + strandat 2022.659 kb on - strandat 2022.659 kb on - strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.676 kb on + strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.677 kb on - strandat 2022.757 kb on + strandat 2022.758 kb on - strandat 2022.850 kb on + strand, within feoBat 2022.850 kb on + strand, within feoBat 2022.850 kb on + strand, within feoBat 2022.850 kb on + strand, within feoBat 2022.851 kb on - strand, within feoBat 2022.851 kb on - strand, within feoBat 2022.851 kb on - strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.949 kb on + strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.950 kb on - strand, within feoBat 2022.970 kb on + strand, within feoBat 2022.970 kb on + strand, within feoBat 2022.970 kb on + strand, within feoBat 2022.970 kb on + strand, within feoBat 2022.971 kb on - strand, within feoBat 2022.971 kb on - strand, within feoBat 2022.971 kb on - strand, within feoBat 2022.985 kb on + strand, within feoBat 2022.985 kb on + strand, within feoBat 2022.986 kb on - strand, within feoBat 2022.986 kb on - strand, within feoBat 2022.986 kb on - strand, within feoBat 2022.986 kb on - strand, within feoBat 2023.108 kb on + strand, within feoBat 2023.108 kb on + strand, within feoBat 2023.108 kb on + strand, within feoBat 2023.108 kb on + strand, within feoBat 2023.109 kb on - strand, within feoBat 2023.109 kb on - strand, within feoBat 2023.109 kb on - strand, within feoBat 2023.109 kb on - strand, within feoBat 2023.109 kb on - strand, within feoBat 2023.147 kb on + strand, within feoBat 2023.148 kb on - strand, within feoBat 2023.148 kb on - strand, within feoBat 2023.148 kb on - strand, within feoBat 2023.246 kb on + strand, within feoBat 2023.246 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.247 kb on - strand, within feoBat 2023.294 kb on + strand, within feoBat 2023.294 kb on + strand, within feoBat 2023.294 kb on + strand, within feoBat 2023.294 kb on + strand, within feoBat 2023.295 kb on - strand, within feoBat 2023.295 kb on - strand, within feoBat 2023.295 kb on - strand, within feoBat 2023.330 kb on + strand, within feoBat 2023.330 kb on + strand, within feoBat 2023.330 kb on + strand, within feoBat 2023.330 kb on + strand, within feoBat 2023.330 kb on + strand, within feoBat 2023.330 kb on + strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.331 kb on - strand, within feoBat 2023.406 kb on + strand, within feoBat 2023.406 kb on + strand, within feoBat 2023.406 kb on + strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.407 kb on - strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.409 kb on + strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.410 kb on - strand, within feoBat 2023.531 kb on + strand, within feoBat 2023.531 kb on + strand, within feoBat 2023.531 kb on + strand, within feoBat 2023.532 kb on - strand, within feoB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
remove
2,021,712 - -1.0
2,021,712 - -0.5
2,021,712 - -1.6
2,021,712 - -1.4
2,021,712 - +0.4
2,021,761 - -2.3
2,021,761 - -1.1
2,022,164 - -1.4
2,022,164 - +0.0
2,022,164 - +0.4
2,022,164 - +0.2
2,022,256 + +0.2
2,022,256 + -0.5
2,022,256 + -0.8
2,022,256 + -1.2
2,022,256 + -1.2
2,022,256 + +1.2
2,022,574 + OKGIIK_09310 0.86 -2.2
2,022,574 + OKGIIK_09310 0.86 +0.1
2,022,574 + OKGIIK_09310 0.86 -1.2
2,022,574 + OKGIIK_09310 0.86 -0.1
2,022,574 + OKGIIK_09310 0.86 -0.9
2,022,575 - OKGIIK_09310 0.86 -1.6
2,022,590 + +1.7
2,022,590 + -1.2
2,022,590 + -0.4
2,022,590 + -0.2
2,022,590 + +0.4
2,022,590 + +2.5
2,022,590 + -0.1
2,022,590 + +1.5
2,022,590 + +1.5
2,022,590 + -0.7
2,022,590 + -1.4
2,022,590 + -0.1
2,022,590 + +1.2
2,022,590 + -0.6
2,022,590 + +0.3
2,022,590 + -1.7
2,022,590 + +0.2
2,022,590 + -1.5
2,022,590 + +1.0
2,022,590 + -0.5
2,022,590 + +2.0
2,022,590 + +0.2
2,022,591 - -0.4
2,022,591 - -0.6
2,022,591 - -1.6
2,022,591 - +1.7
2,022,591 - -0.7
2,022,591 - -0.4
2,022,591 - +1.6
2,022,591 - -1.5
2,022,591 - -0.7
2,022,591 - +1.5
2,022,591 - -1.1
2,022,591 - +0.3
2,022,591 - -0.2
2,022,591 - -0.1
2,022,591 - -0.4
2,022,591 - -0.8
2,022,591 - -2.4
2,022,637 + +0.6
2,022,637 + +1.2
2,022,637 + +0.2
2,022,637 + -1.2
2,022,638 - -1.2
2,022,638 - -0.1
2,022,658 + +0.4
2,022,658 + +0.8
2,022,658 + +0.7
2,022,658 + -0.1
2,022,658 + -0.5
2,022,658 + +0.9
2,022,658 + +0.7
2,022,659 - -0.1
2,022,659 - +1.8
2,022,676 + +0.3
2,022,676 + -1.2
2,022,676 + -0.4
2,022,676 + -1.4
2,022,676 + -0.4
2,022,676 + +2.5
2,022,676 + -0.1
2,022,676 + +0.2
2,022,677 - -0.4
2,022,677 - -0.4
2,022,677 - -1.1
2,022,677 - +1.7
2,022,677 - -1.2
2,022,677 - -0.2
2,022,677 - +0.2
2,022,677 - -0.1
2,022,677 - +1.3
2,022,677 - -0.1
2,022,677 - +0.3
2,022,677 - +1.1
2,022,757 + -1.0
2,022,758 - +0.3
2,022,850 + feoB OKGIIK_09315 0.13 -2.1
2,022,850 + feoB OKGIIK_09315 0.13 -0.8
2,022,850 + feoB OKGIIK_09315 0.13 -0.1
2,022,850 + feoB OKGIIK_09315 0.13 +0.2
2,022,851 - feoB OKGIIK_09315 0.13 +1.2
2,022,851 - feoB OKGIIK_09315 0.13 -0.8
2,022,851 - feoB OKGIIK_09315 0.13 +0.2
2,022,949 + feoB OKGIIK_09315 0.18 -1.5
2,022,949 + feoB OKGIIK_09315 0.18 +0.2
2,022,949 + feoB OKGIIK_09315 0.18 -1.4
2,022,949 + feoB OKGIIK_09315 0.18 -0.9
2,022,949 + feoB OKGIIK_09315 0.18 -1.9
2,022,949 + feoB OKGIIK_09315 0.18 +1.6
2,022,949 + feoB OKGIIK_09315 0.18 -1.0
2,022,949 + feoB OKGIIK_09315 0.18 -0.2
2,022,949 + feoB OKGIIK_09315 0.18 -0.8
2,022,950 - feoB OKGIIK_09315 0.18 -1.1
2,022,950 - feoB OKGIIK_09315 0.18 -0.8
2,022,950 - feoB OKGIIK_09315 0.18 +0.1
2,022,950 - feoB OKGIIK_09315 0.18 +1.2
2,022,950 - feoB OKGIIK_09315 0.18 +0.3
2,022,950 - feoB OKGIIK_09315 0.18 -0.5
2,022,950 - feoB OKGIIK_09315 0.18 +1.2
2,022,950 - feoB OKGIIK_09315 0.18 +0.2
2,022,950 - feoB OKGIIK_09315 0.18 +0.3
2,022,950 - feoB OKGIIK_09315 0.18 -0.1
2,022,950 - feoB OKGIIK_09315 0.18 +0.2
2,022,950 - feoB OKGIIK_09315 0.18 -1.0
2,022,950 - feoB OKGIIK_09315 0.18 -0.1
2,022,970 + feoB OKGIIK_09315 0.19 +0.8
2,022,970 + feoB OKGIIK_09315 0.19 -0.7
2,022,970 + feoB OKGIIK_09315 0.19 -0.1
2,022,970 + feoB OKGIIK_09315 0.19 -2.5
2,022,971 - feoB OKGIIK_09315 0.20 -0.1
2,022,971 - feoB OKGIIK_09315 0.20 -1.5
2,022,971 - feoB OKGIIK_09315 0.20 +0.9
2,022,985 + feoB OKGIIK_09315 0.20 +0.2
2,022,985 + feoB OKGIIK_09315 0.20 +1.5
2,022,986 - feoB OKGIIK_09315 0.20 +1.4
2,022,986 - feoB OKGIIK_09315 0.20 -1.5
2,022,986 - feoB OKGIIK_09315 0.20 -1.2
2,022,986 - feoB OKGIIK_09315 0.20 +1.3
2,023,108 + feoB OKGIIK_09315 0.27 +0.2
2,023,108 + feoB OKGIIK_09315 0.27 -1.1
2,023,108 + feoB OKGIIK_09315 0.27 -0.1
2,023,108 + feoB OKGIIK_09315 0.27 -0.9
2,023,109 - feoB OKGIIK_09315 0.27 +1.5
2,023,109 - feoB OKGIIK_09315 0.27 +0.1
2,023,109 - feoB OKGIIK_09315 0.27 +1.9
2,023,109 - feoB OKGIIK_09315 0.27 -0.6
2,023,109 - feoB OKGIIK_09315 0.27 +0.9
2,023,147 + feoB OKGIIK_09315 0.29 -0.3
2,023,148 - feoB OKGIIK_09315 0.29 -0.3
2,023,148 - feoB OKGIIK_09315 0.29 +0.8
2,023,148 - feoB OKGIIK_09315 0.29 +0.9
2,023,246 + feoB OKGIIK_09315 0.35 +1.4
2,023,246 - feoB OKGIIK_09315 0.35 -0.6
2,023,247 - feoB OKGIIK_09315 0.35 +1.1
2,023,247 - feoB OKGIIK_09315 0.35 -0.1
2,023,247 - feoB OKGIIK_09315 0.35 -1.9
2,023,247 - feoB OKGIIK_09315 0.35 +0.4
2,023,247 - feoB OKGIIK_09315 0.35 +0.2
2,023,247 - feoB OKGIIK_09315 0.35 +0.2
2,023,247 - feoB OKGIIK_09315 0.35 +0.6
2,023,247 - feoB OKGIIK_09315 0.35 -0.5
2,023,247 - feoB OKGIIK_09315 0.35 -0.1
2,023,294 + feoB OKGIIK_09315 0.37 +1.6
2,023,294 + feoB OKGIIK_09315 0.37 +1.4
2,023,294 + feoB OKGIIK_09315 0.37 +0.6
2,023,294 + feoB OKGIIK_09315 0.37 -0.8
2,023,295 - feoB OKGIIK_09315 0.37 -0.6
2,023,295 - feoB OKGIIK_09315 0.37 +0.6
2,023,295 - feoB OKGIIK_09315 0.37 -1.1
2,023,330 + feoB OKGIIK_09315 0.39 -1.8
2,023,330 + feoB OKGIIK_09315 0.39 -2.4
2,023,330 + feoB OKGIIK_09315 0.39 +0.6
2,023,330 + feoB OKGIIK_09315 0.39 -1.7
2,023,330 + feoB OKGIIK_09315 0.39 -1.9
2,023,330 + feoB OKGIIK_09315 0.39 +0.2
2,023,331 - feoB OKGIIK_09315 0.39 +0.3
2,023,331 - feoB OKGIIK_09315 0.39 +0.5
2,023,331 - feoB OKGIIK_09315 0.39 -2.0
2,023,331 - feoB OKGIIK_09315 0.39 -2.0
2,023,331 - feoB OKGIIK_09315 0.39 -0.0
2,023,331 - feoB OKGIIK_09315 0.39 +1.8
2,023,331 - feoB OKGIIK_09315 0.39 +0.8
2,023,331 - feoB OKGIIK_09315 0.39 +0.1
2,023,331 - feoB OKGIIK_09315 0.39 -1.5
2,023,331 - feoB OKGIIK_09315 0.39 +2.2
2,023,331 - feoB OKGIIK_09315 0.39 -0.1
2,023,331 - feoB OKGIIK_09315 0.39 +1.0
2,023,406 + feoB OKGIIK_09315 0.43 -1.3
2,023,406 + feoB OKGIIK_09315 0.43 +0.6
2,023,406 + feoB OKGIIK_09315 0.43 +2.4
2,023,407 - feoB OKGIIK_09315 0.43 -2.0
2,023,407 - feoB OKGIIK_09315 0.43 -1.0
2,023,407 - feoB OKGIIK_09315 0.43 +1.5
2,023,407 - feoB OKGIIK_09315 0.43 +0.2
2,023,407 - feoB OKGIIK_09315 0.43 -1.0
2,023,407 - feoB OKGIIK_09315 0.43 -1.4
2,023,407 - feoB OKGIIK_09315 0.43 +1.2
2,023,407 - feoB OKGIIK_09315 0.43 -1.9
2,023,409 + feoB OKGIIK_09315 0.43 -0.9
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,409 + feoB OKGIIK_09315 0.43 +0.4
2,023,409 + feoB OKGIIK_09315 0.43 -1.0
2,023,409 + feoB OKGIIK_09315 0.43 -0.7
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,409 + feoB OKGIIK_09315 0.43 +0.2
2,023,409 + feoB OKGIIK_09315 0.43 -0.4
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,409 + feoB OKGIIK_09315 0.43 -0.4
2,023,409 + feoB OKGIIK_09315 0.43 +0.8
2,023,409 + feoB OKGIIK_09315 0.43 -0.4
2,023,409 + feoB OKGIIK_09315 0.43 +0.9
2,023,409 + feoB OKGIIK_09315 0.43 -0.2
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,409 + feoB OKGIIK_09315 0.43 +0.3
2,023,409 + feoB OKGIIK_09315 0.43 -1.6
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,409 + feoB OKGIIK_09315 0.43 +0.6
2,023,409 + feoB OKGIIK_09315 0.43 -0.7
2,023,409 + feoB OKGIIK_09315 0.43 -0.1
2,023,410 - feoB OKGIIK_09315 0.43 -0.4
2,023,410 - feoB OKGIIK_09315 0.43 -1.6
2,023,410 - feoB OKGIIK_09315 0.43 -0.1
2,023,410 - feoB OKGIIK_09315 0.43 +1.4
2,023,410 - feoB OKGIIK_09315 0.43 -0.9
2,023,410 - feoB OKGIIK_09315 0.43 +0.7
2,023,410 - feoB OKGIIK_09315 0.43 -0.6
2,023,410 - feoB OKGIIK_09315 0.43 +0.6
2,023,410 - feoB OKGIIK_09315 0.43 +0.2
2,023,410 - feoB OKGIIK_09315 0.43 -0.7
2,023,410 - feoB OKGIIK_09315 0.43 -0.2
2,023,410 - feoB OKGIIK_09315 0.43 +0.9
2,023,410 - feoB OKGIIK_09315 0.43 -0.1
2,023,410 - feoB OKGIIK_09315 0.43 -0.9
2,023,531 + feoB OKGIIK_09315 0.50 -1.6
2,023,531 + feoB OKGIIK_09315 0.50 -0.5
2,023,531 + feoB OKGIIK_09315 0.50 +1.1
2,023,532 - feoB OKGIIK_09315 0.50 -0.4

Or see this region's nucleotide sequence