Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_09125 and OKGIIK_09130 overlap by 4 nucleotides OKGIIK_09130 and caiA are separated by 17 nucleotides caiA and OKGIIK_09140 are separated by 145 nucleotides
OKGIIK_09125: OKGIIK_09125 - hypothetical protein, at 1,964,658 to 1,965,155
_09125
OKGIIK_09130: OKGIIK_09130 - Acetyltransferase, at 1,965,152 to 1,965,700
_09130
OKGIIK_09135: caiA - acyl-CoA dehydrogenase, at 1,965,718 to 1,966,887
caiA
OKGIIK_09140: OKGIIK_09140 - EamA-like transporter family, at 1,967,033 to 1,967,908
_09140
Position (kb)
1965
1966
1967 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1965.108 kb on + strand at 1965.108 kb on + strand at 1965.108 kb on + strand at 1965.381 kb on + strand, within OKGIIK_09130 at 1965.382 kb on - strand, within OKGIIK_09130 at 1965.382 kb on - strand, within OKGIIK_09130 at 1965.382 kb on - strand, within OKGIIK_09130 at 1965.382 kb on - strand, within OKGIIK_09130 at 1965.382 kb on - strand, within OKGIIK_09130 at 1965.624 kb on + strand, within OKGIIK_09130 at 1965.624 kb on + strand, within OKGIIK_09130 at 1965.625 kb on - strand, within OKGIIK_09130 at 1965.625 kb on - strand, within OKGIIK_09130 at 1965.625 kb on - strand, within OKGIIK_09130 at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.079 kb on + strand, within caiA at 1966.080 kb on - strand, within caiA at 1966.080 kb on - strand, within caiA at 1966.080 kb on - strand, within caiA at 1966.131 kb on + strand, within caiA at 1966.131 kb on + strand, within caiA at 1966.131 kb on + strand, within caiA at 1966.131 kb on + strand, within caiA at 1966.131 kb on + strand, within caiA at 1966.132 kb on - strand, within caiA at 1966.132 kb on - strand, within caiA at 1966.359 kb on + strand, within caiA at 1966.523 kb on + strand, within caiA at 1966.523 kb on + strand, within caiA at 1966.523 kb on + strand, within caiA at 1966.523 kb on + strand, within caiA at 1966.523 kb on + strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.524 kb on - strand, within caiA at 1966.551 kb on - strand, within caiA at 1966.565 kb on + strand, within caiA at 1966.565 kb on + strand, within caiA at 1966.566 kb on - strand, within caiA at 1966.566 kb on - strand, within caiA at 1966.566 kb on - strand, within caiA at 1966.566 kb on - strand, within caiA at 1966.566 kb on - strand, within caiA at 1966.566 kb on - strand, within caiA at 1966.646 kb on + strand, within caiA at 1966.646 kb on + strand, within caiA at 1966.647 kb on - strand, within caiA at 1966.647 kb on - strand, within caiA at 1966.647 kb on - strand, within caiA at 1966.677 kb on - strand, within caiA at 1966.677 kb on - strand, within caiA at 1966.677 kb on - strand, within caiA at 1966.677 kb on - strand, within caiA at 1966.677 kb on - strand, within caiA at 1966.677 kb on - strand, within caiA at 1966.856 kb on + strand at 1966.856 kb on + strand at 1966.856 kb on + strand at 1966.856 kb on + strand at 1966.857 kb on - strand at 1966.857 kb on - strand at 1966.857 kb on - strand at 1966.857 kb on - strand at 1966.857 kb on - strand at 1966.857 kb on - strand at 1966.909 kb on + strand at 1966.910 kb on - strand at 1966.910 kb on - strand at 1966.910 kb on - strand at 1966.919 kb on + strand at 1966.919 kb on + strand at 1966.919 kb on + strand at 1966.920 kb on - strand at 1966.924 kb on + strand at 1966.924 kb on + strand at 1966.924 kb on + strand at 1966.924 kb on + strand at 1966.924 kb on - strand at 1966.925 kb on - strand at 1966.983 kb on - strand at 1966.983 kb on - strand at 1966.983 kb on - strand at 1966.983 kb on - strand at 1966.983 kb on - strand at 1966.983 kb on - strand at 1966.995 kb on - strand at 1967.126 kb on + strand, within OKGIIK_09140 at 1967.126 kb on + strand, within OKGIIK_09140 at 1967.127 kb on - strand, within OKGIIK_09140 at 1967.127 kb on - strand, within OKGIIK_09140 at 1967.561 kb on + strand, within OKGIIK_09140 at 1967.562 kb on - strand, within OKGIIK_09140 at 1967.562 kb on - strand, within OKGIIK_09140 at 1967.744 kb on + strand, within OKGIIK_09140 at 1967.744 kb on + strand, within OKGIIK_09140 at 1967.744 kb on + strand, within OKGIIK_09140 at 1967.744 kb on + strand, within OKGIIK_09140 at 1967.744 kb on + strand, within OKGIIK_09140 at 1967.745 kb on - strand, within OKGIIK_09140 at 1967.745 kb on - strand, within OKGIIK_09140 at 1967.745 kb on - strand, within OKGIIK_09140 at 1967.745 kb on - strand, within OKGIIK_09140 at 1967.777 kb on + strand, within OKGIIK_09140 at 1967.826 kb on + strand at 1967.826 kb on + strand at 1967.826 kb on + strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand at 1967.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 1,965,108 + -0.3 1,965,108 + -0.4 1,965,108 + -0.9 1,965,381 + OKGIIK_09130 0.42 -0.6 1,965,382 - OKGIIK_09130 0.42 -0.3 1,965,382 - OKGIIK_09130 0.42 +0.3 1,965,382 - OKGIIK_09130 0.42 +1.0 1,965,382 - OKGIIK_09130 0.42 +0.7 1,965,382 - OKGIIK_09130 0.42 -1.0 1,965,624 + OKGIIK_09130 0.86 -0.6 1,965,624 + OKGIIK_09130 0.86 +0.8 1,965,625 - OKGIIK_09130 0.86 +0.9 1,965,625 - OKGIIK_09130 0.86 +1.2 1,965,625 - OKGIIK_09130 0.86 -0.6 1,965,785 + -0.5 1,965,785 + -0.4 1,965,785 + +0.2 1,965,785 + -0.6 1,965,785 + +0.7 1,965,785 + -0.7 1,965,785 + +0.4 1,965,785 + -1.2 1,965,785 + +0.9 1,965,785 + -0.6 1,965,785 + -0.1 1,965,785 + +0.6 1,965,785 + +0.2 1,965,785 + +0.2 1,965,785 + -0.1 1,965,785 + -0.4 1,965,785 + -0.6 1,965,785 + -0.1 1,965,785 + -0.3 1,965,785 + -0.1 1,965,785 + -0.6 1,965,785 + -0.5 1,965,785 + +0.1 1,965,785 + -1.3 1,965,785 + -1.6 1,965,785 + -0.7 1,965,785 + -1.3 1,965,786 - -0.1 1,965,786 - +0.7 1,965,786 - -1.8 1,965,786 - -1.3 1,965,786 - -1.5 1,965,786 - +0.8 1,965,786 - +2.8 1,965,786 - -0.7 1,965,786 - -2.0 1,965,786 - -0.6 1,965,786 - -1.5 1,965,786 - -1.9 1,965,786 - -0.7 1,965,786 - +0.2 1,965,786 - -1.0 1,965,786 - +0.4 1,965,786 - +1.9 1,965,786 - +0.0 1,965,786 - +1.2 1,965,786 - -1.5 1,965,786 - -1.1 1,965,786 - -0.6 1,965,786 - -2.4 1,965,786 - -0.1 1,966,079 + caiA OKGIIK_09135 0.31 -2.6 1,966,079 + caiA OKGIIK_09135 0.31 +1.2 1,966,079 + caiA OKGIIK_09135 0.31 -2.0 1,966,079 + caiA OKGIIK_09135 0.31 -0.1 1,966,079 + caiA OKGIIK_09135 0.31 -1.1 1,966,079 + caiA OKGIIK_09135 0.31 +0.2 1,966,079 + caiA OKGIIK_09135 0.31 -1.5 1,966,079 + caiA OKGIIK_09135 0.31 +1.0 1,966,079 + caiA OKGIIK_09135 0.31 +0.2 1,966,079 + caiA OKGIIK_09135 0.31 -0.1 1,966,080 - caiA OKGIIK_09135 0.31 -0.4 1,966,080 - caiA OKGIIK_09135 0.31 -0.7 1,966,080 - caiA OKGIIK_09135 0.31 -1.3 1,966,131 + caiA OKGIIK_09135 0.35 +0.9 1,966,131 + caiA OKGIIK_09135 0.35 -2.7 1,966,131 + caiA OKGIIK_09135 0.35 +0.2 1,966,131 + caiA OKGIIK_09135 0.35 +0.2 1,966,131 + caiA OKGIIK_09135 0.35 -0.6 1,966,132 - caiA OKGIIK_09135 0.35 -0.8 1,966,132 - caiA OKGIIK_09135 0.35 +0.5 1,966,359 + caiA OKGIIK_09135 0.55 +0.9 1,966,523 + caiA OKGIIK_09135 0.69 +0.6 1,966,523 + caiA OKGIIK_09135 0.69 -1.7 1,966,523 + caiA OKGIIK_09135 0.69 -0.4 1,966,523 + caiA OKGIIK_09135 0.69 +0.2 1,966,523 + caiA OKGIIK_09135 0.69 +0.1 1,966,524 - caiA OKGIIK_09135 0.69 -0.5 1,966,524 - caiA OKGIIK_09135 0.69 -1.1 1,966,524 - caiA OKGIIK_09135 0.69 -0.6 1,966,524 - caiA OKGIIK_09135 0.69 -0.6 1,966,524 - caiA OKGIIK_09135 0.69 -1.3 1,966,524 - caiA OKGIIK_09135 0.69 -0.8 1,966,524 - caiA OKGIIK_09135 0.69 -1.3 1,966,524 - caiA OKGIIK_09135 0.69 -1.1 1,966,524 - caiA OKGIIK_09135 0.69 -0.0 1,966,524 - caiA OKGIIK_09135 0.69 +0.6 1,966,524 - caiA OKGIIK_09135 0.69 -1.2 1,966,524 - caiA OKGIIK_09135 0.69 -0.6 1,966,551 - caiA OKGIIK_09135 0.71 -1.1 1,966,565 + caiA OKGIIK_09135 0.72 -0.6 1,966,565 + caiA OKGIIK_09135 0.72 -3.0 1,966,566 - caiA OKGIIK_09135 0.72 +1.2 1,966,566 - caiA OKGIIK_09135 0.72 -1.1 1,966,566 - caiA OKGIIK_09135 0.72 -0.4 1,966,566 - caiA OKGIIK_09135 0.72 +1.2 1,966,566 - caiA OKGIIK_09135 0.72 -1.0 1,966,566 - caiA OKGIIK_09135 0.72 -0.5 1,966,646 + caiA OKGIIK_09135 0.79 -1.0 1,966,646 + caiA OKGIIK_09135 0.79 -0.4 1,966,647 - caiA OKGIIK_09135 0.79 +0.2 1,966,647 - caiA OKGIIK_09135 0.79 -0.4 1,966,647 - caiA OKGIIK_09135 0.79 +0.8 1,966,677 - caiA OKGIIK_09135 0.82 -1.3 1,966,677 - caiA OKGIIK_09135 0.82 +0.0 1,966,677 - caiA OKGIIK_09135 0.82 -2.7 1,966,677 - caiA OKGIIK_09135 0.82 -2.3 1,966,677 - caiA OKGIIK_09135 0.82 +0.4 1,966,677 - caiA OKGIIK_09135 0.82 +1.2 1,966,856 + +0.9 1,966,856 + -1.0 1,966,856 + +1.2 1,966,856 + -1.6 1,966,857 - +0.2 1,966,857 - -0.1 1,966,857 - -1.0 1,966,857 - +0.1 1,966,857 - -1.9 1,966,857 - +1.0 1,966,909 + -1.8 1,966,910 - -1.0 1,966,910 - +0.7 1,966,910 - -0.4 1,966,919 + -0.6 1,966,919 + -0.4 1,966,919 + -1.0 1,966,920 - +0.1 1,966,924 + -0.8 1,966,924 + -0.7 1,966,924 + -1.7 1,966,924 + +0.5 1,966,924 - +1.2 1,966,925 - -0.2 1,966,983 - +0.1 1,966,983 - +0.9 1,966,983 - -1.1 1,966,983 - -0.4 1,966,983 - +0.4 1,966,983 - +1.2 1,966,995 - -1.0 1,967,126 + OKGIIK_09140 0.11 -2.4 1,967,126 + OKGIIK_09140 0.11 -1.6 1,967,127 - OKGIIK_09140 0.11 -0.6 1,967,127 - OKGIIK_09140 0.11 +1.0 1,967,561 + OKGIIK_09140 0.60 -0.6 1,967,562 - OKGIIK_09140 0.60 -0.3 1,967,562 - OKGIIK_09140 0.60 -1.2 1,967,744 + OKGIIK_09140 0.81 +0.8 1,967,744 + OKGIIK_09140 0.81 +0.9 1,967,744 + OKGIIK_09140 0.81 -1.2 1,967,744 + OKGIIK_09140 0.81 +1.0 1,967,744 + OKGIIK_09140 0.81 -1.5 1,967,745 - OKGIIK_09140 0.81 +0.4 1,967,745 - OKGIIK_09140 0.81 +0.2 1,967,745 - OKGIIK_09140 0.81 -0.5 1,967,745 - OKGIIK_09140 0.81 -0.2 1,967,777 + OKGIIK_09140 0.85 +0.2 1,967,826 + +0.7 1,967,826 + -0.3 1,967,826 + -0.8 1,967,827 - -0.9 1,967,827 - -0.2 1,967,827 - -0.8 1,967,827 - -1.1 1,967,827 - -2.5 1,967,827 - -1.8 1,967,827 - -1.9 1,967,827 - +1.2 1,967,827 - +0.4 1,967,827 - -0.5 1,967,827 - -0.8 1,967,827 - -1.0
Or see this region's nucleotide sequence