Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09135

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_09125 and OKGIIK_09130 overlap by 4 nucleotidesOKGIIK_09130 and caiA are separated by 17 nucleotidescaiA and OKGIIK_09140 are separated by 145 nucleotides OKGIIK_09125: OKGIIK_09125 - hypothetical protein, at 1,964,658 to 1,965,155 _09125 OKGIIK_09130: OKGIIK_09130 - Acetyltransferase, at 1,965,152 to 1,965,700 _09130 OKGIIK_09135: caiA - acyl-CoA dehydrogenase, at 1,965,718 to 1,966,887 caiA OKGIIK_09140: OKGIIK_09140 - EamA-like transporter family, at 1,967,033 to 1,967,908 _09140 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1965.108 kb on + strandat 1965.108 kb on + strandat 1965.108 kb on + strandat 1965.381 kb on + strand, within OKGIIK_09130at 1965.382 kb on - strand, within OKGIIK_09130at 1965.382 kb on - strand, within OKGIIK_09130at 1965.382 kb on - strand, within OKGIIK_09130at 1965.382 kb on - strand, within OKGIIK_09130at 1965.382 kb on - strand, within OKGIIK_09130at 1965.624 kb on + strand, within OKGIIK_09130at 1965.624 kb on + strand, within OKGIIK_09130at 1965.625 kb on - strand, within OKGIIK_09130at 1965.625 kb on - strand, within OKGIIK_09130at 1965.625 kb on - strand, within OKGIIK_09130at 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.785 kb on + strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1965.786 kb on - strandat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.079 kb on + strand, within caiAat 1966.080 kb on - strand, within caiAat 1966.080 kb on - strand, within caiAat 1966.080 kb on - strand, within caiAat 1966.131 kb on + strand, within caiAat 1966.131 kb on + strand, within caiAat 1966.131 kb on + strand, within caiAat 1966.131 kb on + strand, within caiAat 1966.131 kb on + strand, within caiAat 1966.132 kb on - strand, within caiAat 1966.132 kb on - strand, within caiAat 1966.359 kb on + strand, within caiAat 1966.523 kb on + strand, within caiAat 1966.523 kb on + strand, within caiAat 1966.523 kb on + strand, within caiAat 1966.523 kb on + strand, within caiAat 1966.523 kb on + strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.524 kb on - strand, within caiAat 1966.551 kb on - strand, within caiAat 1966.565 kb on + strand, within caiAat 1966.565 kb on + strand, within caiAat 1966.566 kb on - strand, within caiAat 1966.566 kb on - strand, within caiAat 1966.566 kb on - strand, within caiAat 1966.566 kb on - strand, within caiAat 1966.566 kb on - strand, within caiAat 1966.566 kb on - strand, within caiAat 1966.646 kb on + strand, within caiAat 1966.646 kb on + strand, within caiAat 1966.647 kb on - strand, within caiAat 1966.647 kb on - strand, within caiAat 1966.647 kb on - strand, within caiAat 1966.677 kb on - strand, within caiAat 1966.677 kb on - strand, within caiAat 1966.677 kb on - strand, within caiAat 1966.677 kb on - strand, within caiAat 1966.677 kb on - strand, within caiAat 1966.677 kb on - strand, within caiAat 1966.856 kb on + strandat 1966.856 kb on + strandat 1966.856 kb on + strandat 1966.856 kb on + strandat 1966.857 kb on - strandat 1966.857 kb on - strandat 1966.857 kb on - strandat 1966.857 kb on - strandat 1966.857 kb on - strandat 1966.857 kb on - strandat 1966.909 kb on + strandat 1966.910 kb on - strandat 1966.910 kb on - strandat 1966.910 kb on - strandat 1966.919 kb on + strandat 1966.919 kb on + strandat 1966.919 kb on + strandat 1966.920 kb on - strandat 1966.924 kb on + strandat 1966.924 kb on + strandat 1966.924 kb on + strandat 1966.924 kb on + strandat 1966.924 kb on - strandat 1966.925 kb on - strandat 1966.983 kb on - strandat 1966.983 kb on - strandat 1966.983 kb on - strandat 1966.983 kb on - strandat 1966.983 kb on - strandat 1966.983 kb on - strandat 1966.995 kb on - strandat 1967.126 kb on + strand, within OKGIIK_09140at 1967.126 kb on + strand, within OKGIIK_09140at 1967.127 kb on - strand, within OKGIIK_09140at 1967.127 kb on - strand, within OKGIIK_09140at 1967.561 kb on + strand, within OKGIIK_09140at 1967.562 kb on - strand, within OKGIIK_09140at 1967.562 kb on - strand, within OKGIIK_09140at 1967.744 kb on + strand, within OKGIIK_09140at 1967.744 kb on + strand, within OKGIIK_09140at 1967.744 kb on + strand, within OKGIIK_09140at 1967.744 kb on + strand, within OKGIIK_09140at 1967.744 kb on + strand, within OKGIIK_09140at 1967.745 kb on - strand, within OKGIIK_09140at 1967.745 kb on - strand, within OKGIIK_09140at 1967.745 kb on - strand, within OKGIIK_09140at 1967.745 kb on - strand, within OKGIIK_09140at 1967.777 kb on + strand, within OKGIIK_09140at 1967.826 kb on + strandat 1967.826 kb on + strandat 1967.826 kb on + strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strandat 1967.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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1,965,108 + -0.3
1,965,108 + -0.4
1,965,108 + -0.9
1,965,381 + OKGIIK_09130 0.42 -0.6
1,965,382 - OKGIIK_09130 0.42 -0.3
1,965,382 - OKGIIK_09130 0.42 +0.3
1,965,382 - OKGIIK_09130 0.42 +1.0
1,965,382 - OKGIIK_09130 0.42 +0.7
1,965,382 - OKGIIK_09130 0.42 -1.0
1,965,624 + OKGIIK_09130 0.86 -0.6
1,965,624 + OKGIIK_09130 0.86 +0.8
1,965,625 - OKGIIK_09130 0.86 +0.9
1,965,625 - OKGIIK_09130 0.86 +1.2
1,965,625 - OKGIIK_09130 0.86 -0.6
1,965,785 + -0.5
1,965,785 + -0.4
1,965,785 + +0.2
1,965,785 + -0.6
1,965,785 + +0.7
1,965,785 + -0.7
1,965,785 + +0.4
1,965,785 + -1.2
1,965,785 + +0.9
1,965,785 + -0.6
1,965,785 + -0.1
1,965,785 + +0.6
1,965,785 + +0.2
1,965,785 + +0.2
1,965,785 + -0.1
1,965,785 + -0.4
1,965,785 + -0.6
1,965,785 + -0.1
1,965,785 + -0.3
1,965,785 + -0.1
1,965,785 + -0.6
1,965,785 + -0.5
1,965,785 + +0.1
1,965,785 + -1.3
1,965,785 + -1.6
1,965,785 + -0.7
1,965,785 + -1.3
1,965,786 - -0.1
1,965,786 - +0.7
1,965,786 - -1.8
1,965,786 - -1.3
1,965,786 - -1.5
1,965,786 - +0.8
1,965,786 - +2.8
1,965,786 - -0.7
1,965,786 - -2.0
1,965,786 - -0.6
1,965,786 - -1.5
1,965,786 - -1.9
1,965,786 - -0.7
1,965,786 - +0.2
1,965,786 - -1.0
1,965,786 - +0.4
1,965,786 - +1.9
1,965,786 - +0.0
1,965,786 - +1.2
1,965,786 - -1.5
1,965,786 - -1.1
1,965,786 - -0.6
1,965,786 - -2.4
1,965,786 - -0.1
1,966,079 + caiA OKGIIK_09135 0.31 -2.6
1,966,079 + caiA OKGIIK_09135 0.31 +1.2
1,966,079 + caiA OKGIIK_09135 0.31 -2.0
1,966,079 + caiA OKGIIK_09135 0.31 -0.1
1,966,079 + caiA OKGIIK_09135 0.31 -1.1
1,966,079 + caiA OKGIIK_09135 0.31 +0.2
1,966,079 + caiA OKGIIK_09135 0.31 -1.5
1,966,079 + caiA OKGIIK_09135 0.31 +1.0
1,966,079 + caiA OKGIIK_09135 0.31 +0.2
1,966,079 + caiA OKGIIK_09135 0.31 -0.1
1,966,080 - caiA OKGIIK_09135 0.31 -0.4
1,966,080 - caiA OKGIIK_09135 0.31 -0.7
1,966,080 - caiA OKGIIK_09135 0.31 -1.3
1,966,131 + caiA OKGIIK_09135 0.35 +0.9
1,966,131 + caiA OKGIIK_09135 0.35 -2.7
1,966,131 + caiA OKGIIK_09135 0.35 +0.2
1,966,131 + caiA OKGIIK_09135 0.35 +0.2
1,966,131 + caiA OKGIIK_09135 0.35 -0.6
1,966,132 - caiA OKGIIK_09135 0.35 -0.8
1,966,132 - caiA OKGIIK_09135 0.35 +0.5
1,966,359 + caiA OKGIIK_09135 0.55 +0.9
1,966,523 + caiA OKGIIK_09135 0.69 +0.6
1,966,523 + caiA OKGIIK_09135 0.69 -1.7
1,966,523 + caiA OKGIIK_09135 0.69 -0.4
1,966,523 + caiA OKGIIK_09135 0.69 +0.2
1,966,523 + caiA OKGIIK_09135 0.69 +0.1
1,966,524 - caiA OKGIIK_09135 0.69 -0.5
1,966,524 - caiA OKGIIK_09135 0.69 -1.1
1,966,524 - caiA OKGIIK_09135 0.69 -0.6
1,966,524 - caiA OKGIIK_09135 0.69 -0.6
1,966,524 - caiA OKGIIK_09135 0.69 -1.3
1,966,524 - caiA OKGIIK_09135 0.69 -0.8
1,966,524 - caiA OKGIIK_09135 0.69 -1.3
1,966,524 - caiA OKGIIK_09135 0.69 -1.1
1,966,524 - caiA OKGIIK_09135 0.69 -0.0
1,966,524 - caiA OKGIIK_09135 0.69 +0.6
1,966,524 - caiA OKGIIK_09135 0.69 -1.2
1,966,524 - caiA OKGIIK_09135 0.69 -0.6
1,966,551 - caiA OKGIIK_09135 0.71 -1.1
1,966,565 + caiA OKGIIK_09135 0.72 -0.6
1,966,565 + caiA OKGIIK_09135 0.72 -3.0
1,966,566 - caiA OKGIIK_09135 0.72 +1.2
1,966,566 - caiA OKGIIK_09135 0.72 -1.1
1,966,566 - caiA OKGIIK_09135 0.72 -0.4
1,966,566 - caiA OKGIIK_09135 0.72 +1.2
1,966,566 - caiA OKGIIK_09135 0.72 -1.0
1,966,566 - caiA OKGIIK_09135 0.72 -0.5
1,966,646 + caiA OKGIIK_09135 0.79 -1.0
1,966,646 + caiA OKGIIK_09135 0.79 -0.4
1,966,647 - caiA OKGIIK_09135 0.79 +0.2
1,966,647 - caiA OKGIIK_09135 0.79 -0.4
1,966,647 - caiA OKGIIK_09135 0.79 +0.8
1,966,677 - caiA OKGIIK_09135 0.82 -1.3
1,966,677 - caiA OKGIIK_09135 0.82 +0.0
1,966,677 - caiA OKGIIK_09135 0.82 -2.7
1,966,677 - caiA OKGIIK_09135 0.82 -2.3
1,966,677 - caiA OKGIIK_09135 0.82 +0.4
1,966,677 - caiA OKGIIK_09135 0.82 +1.2
1,966,856 + +0.9
1,966,856 + -1.0
1,966,856 + +1.2
1,966,856 + -1.6
1,966,857 - +0.2
1,966,857 - -0.1
1,966,857 - -1.0
1,966,857 - +0.1
1,966,857 - -1.9
1,966,857 - +1.0
1,966,909 + -1.8
1,966,910 - -1.0
1,966,910 - +0.7
1,966,910 - -0.4
1,966,919 + -0.6
1,966,919 + -0.4
1,966,919 + -1.0
1,966,920 - +0.1
1,966,924 + -0.8
1,966,924 + -0.7
1,966,924 + -1.7
1,966,924 + +0.5
1,966,924 - +1.2
1,966,925 - -0.2
1,966,983 - +0.1
1,966,983 - +0.9
1,966,983 - -1.1
1,966,983 - -0.4
1,966,983 - +0.4
1,966,983 - +1.2
1,966,995 - -1.0
1,967,126 + OKGIIK_09140 0.11 -2.4
1,967,126 + OKGIIK_09140 0.11 -1.6
1,967,127 - OKGIIK_09140 0.11 -0.6
1,967,127 - OKGIIK_09140 0.11 +1.0
1,967,561 + OKGIIK_09140 0.60 -0.6
1,967,562 - OKGIIK_09140 0.60 -0.3
1,967,562 - OKGIIK_09140 0.60 -1.2
1,967,744 + OKGIIK_09140 0.81 +0.8
1,967,744 + OKGIIK_09140 0.81 +0.9
1,967,744 + OKGIIK_09140 0.81 -1.2
1,967,744 + OKGIIK_09140 0.81 +1.0
1,967,744 + OKGIIK_09140 0.81 -1.5
1,967,745 - OKGIIK_09140 0.81 +0.4
1,967,745 - OKGIIK_09140 0.81 +0.2
1,967,745 - OKGIIK_09140 0.81 -0.5
1,967,745 - OKGIIK_09140 0.81 -0.2
1,967,777 + OKGIIK_09140 0.85 +0.2
1,967,826 + +0.7
1,967,826 + -0.3
1,967,826 + -0.8
1,967,827 - -0.9
1,967,827 - -0.2
1,967,827 - -0.8
1,967,827 - -1.1
1,967,827 - -2.5
1,967,827 - -1.8
1,967,827 - -1.9
1,967,827 - +1.2
1,967,827 - +0.4
1,967,827 - -0.5
1,967,827 - -0.8
1,967,827 - -1.0

Or see this region's nucleotide sequence