Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08855

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08835 and OKGIIK_08840 are separated by 3 nucleotidesOKGIIK_08840 and OKGIIK_08845 overlap by 4 nucleotidesOKGIIK_08845 and OKGIIK_08850 overlap by 4 nucleotidesOKGIIK_08850 and OKGIIK_08855 overlap by 4 nucleotidesOKGIIK_08855 and OKGIIK_08860 overlap by 4 nucleotidesOKGIIK_08860 and OKGIIK_08865 overlap by 4 nucleotidesOKGIIK_08865 and OKGIIK_08870 overlap by 4 nucleotidesOKGIIK_08870 and OKGIIK_08875 overlap by 4 nucleotides OKGIIK_08835: OKGIIK_08835 - hypothetical protein, at 1,912,509 to 1,912,715 _08835 OKGIIK_08840: OKGIIK_08840 - hypothetical protein, at 1,912,719 to 1,912,967 _08840 OKGIIK_08845: OKGIIK_08845 - hypothetical protein, at 1,912,964 to 1,913,365 _08845 OKGIIK_08850: OKGIIK_08850 - hypothetical protein, at 1,913,362 to 1,913,688 _08850 OKGIIK_08855: OKGIIK_08855 - hypothetical protein, at 1,913,685 to 1,913,936 _08855 OKGIIK_08860: OKGIIK_08860 - hypothetical protein, at 1,913,933 to 1,914,229 _08860 OKGIIK_08865: OKGIIK_08865 - hypothetical protein, at 1,914,226 to 1,914,627 _08865 OKGIIK_08870: OKGIIK_08870 - hypothetical protein, at 1,914,624 to 1,914,887 _08870 OKGIIK_08875: OKGIIK_08875 - hypothetical protein, at 1,914,884 to 1,915,153 _08875 Position (kb) 1913 1914Strain fitness (log2 ratio) -2 -1 0 1 2at 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.722 kb on + strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.723 kb on - strandat 1912.764 kb on + strand, within OKGIIK_08840at 1913.037 kb on - strand, within OKGIIK_08845at 1913.037 kb on - strand, within OKGIIK_08845at 1913.037 kb on - strand, within OKGIIK_08845at 1913.144 kb on + strand, within OKGIIK_08845at 1913.145 kb on - strand, within OKGIIK_08845at 1913.186 kb on - strand, within OKGIIK_08845at 1913.219 kb on + strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.220 kb on - strand, within OKGIIK_08845at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.890 kb on - strand, within OKGIIK_08855at 1913.985 kb on + strand, within OKGIIK_08860at 1913.986 kb on - strand, within OKGIIK_08860at 1913.986 kb on - strand, within OKGIIK_08860at 1914.509 kb on - strand, within OKGIIK_08865at 1914.519 kb on - strand, within OKGIIK_08865at 1914.673 kb on - strand, within OKGIIK_08870at 1914.673 kb on - strand, within OKGIIK_08870at 1914.675 kb on + strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.823 kb on - strand, within OKGIIK_08870at 1914.835 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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1,912,722 + +1.0
1,912,722 + -0.9
1,912,722 + -0.6
1,912,722 + +0.8
1,912,722 + +0.1
1,912,722 + +0.2
1,912,722 + -1.1
1,912,722 + -0.5
1,912,722 + -0.4
1,912,723 - +0.8
1,912,723 - -0.6
1,912,723 - -0.3
1,912,723 - +1.9
1,912,723 - -0.1
1,912,723 - +2.5
1,912,723 - +0.0
1,912,723 - -0.1
1,912,723 - -0.8
1,912,723 - -1.3
1,912,723 - +0.2
1,912,723 - -0.4
1,912,723 - +1.0
1,912,723 - -1.3
1,912,723 - +0.1
1,912,723 - +1.4
1,912,723 - -0.4
1,912,764 + OKGIIK_08840 0.18 +0.9
1,913,037 - OKGIIK_08845 0.18 -1.5
1,913,037 - OKGIIK_08845 0.18 -0.4
1,913,037 - OKGIIK_08845 0.18 -1.5
1,913,144 + OKGIIK_08845 0.45 +0.4
1,913,145 - OKGIIK_08845 0.45 -2.6
1,913,186 - OKGIIK_08845 0.55 -2.4
1,913,219 + OKGIIK_08845 0.63 +1.6
1,913,220 - OKGIIK_08845 0.64 -1.7
1,913,220 - OKGIIK_08845 0.64 -1.1
1,913,220 - OKGIIK_08845 0.64 -0.6
1,913,220 - OKGIIK_08845 0.64 -1.1
1,913,890 - OKGIIK_08855 0.81 +1.2
1,913,890 - OKGIIK_08855 0.81 -0.8
1,913,890 - OKGIIK_08855 0.81 -0.3
1,913,890 - OKGIIK_08855 0.81 -1.6
1,913,985 + OKGIIK_08860 0.18 +1.2
1,913,986 - OKGIIK_08860 0.18 -0.1
1,913,986 - OKGIIK_08860 0.18 +0.9
1,914,509 - OKGIIK_08865 0.70 -0.4
1,914,519 - OKGIIK_08865 0.73 +1.4
1,914,673 - OKGIIK_08870 0.19 -0.1
1,914,673 - OKGIIK_08870 0.19 +0.6
1,914,675 + OKGIIK_08870 0.19 +1.3
1,914,676 - OKGIIK_08870 0.20 +0.3
1,914,676 - OKGIIK_08870 0.20 +0.1
1,914,823 - OKGIIK_08870 0.75 -1.9
1,914,835 - OKGIIK_08870 0.80 +0.7
1,914,841 - OKGIIK_08870 0.82 -0.1
1,914,841 - OKGIIK_08870 0.82 -1.0
1,914,841 - OKGIIK_08870 0.82 -0.1
1,914,841 - OKGIIK_08870 0.82 -1.2
1,914,841 - OKGIIK_08870 0.82 +1.0

Or see this region's nucleotide sequence