Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08735

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08725 and OKGIIK_08730 overlap by 4 nucleotidesOKGIIK_08730 and OKGIIK_08735 are separated by 2 nucleotidesOKGIIK_08735 and OKGIIK_08740 are separated by 31 nucleotidesOKGIIK_08740 and OKGIIK_08745 overlap by 32 nucleotidesOKGIIK_08745 and OKGIIK_08750 overlap by 4 nucleotides OKGIIK_08725: OKGIIK_08725 - PBSX family phage terminase large subunit, at 1,902,970 to 1,904,319 _08725 OKGIIK_08730: OKGIIK_08730 - hypothetical protein, at 1,904,316 to 1,904,738 _08730 OKGIIK_08735: OKGIIK_08735 - hypothetical protein, at 1,904,741 to 1,904,983 _08735 OKGIIK_08740: OKGIIK_08740 - hypothetical protein, at 1,905,015 to 1,905,380 _08740 OKGIIK_08745: OKGIIK_08745 - hypothetical protein, at 1,905,349 to 1,905,525 _08745 OKGIIK_08750: OKGIIK_08750 - HNH endonuclease, at 1,905,522 to 1,906,001 _08750 Position (kb) 1904 1905Strain fitness (log2 ratio) -2 -1 0 1 2at 1903.814 kb on + strand, within OKGIIK_08725at 1903.820 kb on + strand, within OKGIIK_08725at 1903.820 kb on + strand, within OKGIIK_08725at 1903.821 kb on - strand, within OKGIIK_08725at 1904.054 kb on + strand, within OKGIIK_08725at 1904.055 kb on - strand, within OKGIIK_08725at 1904.055 kb on - strand, within OKGIIK_08725at 1904.055 kb on - strand, within OKGIIK_08725at 1904.081 kb on + strand, within OKGIIK_08725at 1904.081 kb on + strand, within OKGIIK_08725at 1904.081 kb on + strand, within OKGIIK_08725at 1904.081 kb on + strand, within OKGIIK_08725at 1904.082 kb on - strand, within OKGIIK_08725at 1904.554 kb on + strand, within OKGIIK_08730at 1904.555 kb on - strand, within OKGIIK_08730at 1904.844 kb on + strand, within OKGIIK_08735at 1904.845 kb on - strand, within OKGIIK_08735at 1904.940 kb on + strand, within OKGIIK_08735at 1904.941 kb on - strand, within OKGIIK_08735at 1905.079 kb on + strand, within OKGIIK_08740at 1905.151 kb on + strand, within OKGIIK_08740at 1905.152 kb on - strand, within OKGIIK_08740at 1905.152 kb on - strand, within OKGIIK_08740at 1905.178 kb on + strand, within OKGIIK_08740at 1905.178 kb on + strand, within OKGIIK_08740at 1905.179 kb on - strand, within OKGIIK_08740at 1905.239 kb on + strand, within OKGIIK_08740at 1905.239 kb on + strand, within OKGIIK_08740at 1905.239 kb on + strand, within OKGIIK_08740at 1905.240 kb on - strand, within OKGIIK_08740at 1905.568 kb on + strandat 1905.568 kb on + strandat 1905.568 kb on + strandat 1905.686 kb on + strand, within OKGIIK_08750at 1905.687 kb on - strand, within OKGIIK_08750at 1905.687 kb on - strand, within OKGIIK_08750at 1905.687 kb on - strand, within OKGIIK_08750at 1905.841 kb on + strand, within OKGIIK_08750at 1905.841 kb on + strand, within OKGIIK_08750at 1905.841 kb on + strand, within OKGIIK_08750at 1905.841 kb on + strand, within OKGIIK_08750at 1905.841 kb on + strand, within OKGIIK_08750at 1905.841 kb on + strand, within OKGIIK_08750at 1905.842 kb on - strand, within OKGIIK_08750at 1905.842 kb on - strand, within OKGIIK_08750at 1905.842 kb on - strand, within OKGIIK_08750at 1905.842 kb on - strand, within OKGIIK_08750at 1905.842 kb on - strand, within OKGIIK_08750at 1905.845 kb on + strand, within OKGIIK_08750at 1905.846 kb on - strand, within OKGIIK_08750at 1905.897 kb on + strand, within OKGIIK_08750at 1905.897 kb on + strand, within OKGIIK_08750at 1905.898 kb on - strand, within OKGIIK_08750at 1905.898 kb on - strand, within OKGIIK_08750at 1905.942 kb on + strand, within OKGIIK_08750at 1905.942 kb on + strand, within OKGIIK_08750at 1905.942 kb on + strand, within OKGIIK_08750at 1905.943 kb on - strand, within OKGIIK_08750at 1905.945 kb on + strand, within OKGIIK_08750at 1905.945 kb on + strand, within OKGIIK_08750at 1905.945 kb on + strand, within OKGIIK_08750at 1905.945 kb on + strand, within OKGIIK_08750at 1905.946 kb on - strand, within OKGIIK_08750at 1905.946 kb on - strand, within OKGIIK_08750at 1905.946 kb on - strand, within OKGIIK_08750

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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1,903,814 + OKGIIK_08725 0.63 +2.0
1,903,820 + OKGIIK_08725 0.63 +0.2
1,903,820 + OKGIIK_08725 0.63 -0.3
1,903,821 - OKGIIK_08725 0.63 -1.2
1,904,054 + OKGIIK_08725 0.80 -1.2
1,904,055 - OKGIIK_08725 0.80 +0.2
1,904,055 - OKGIIK_08725 0.80 +1.0
1,904,055 - OKGIIK_08725 0.80 +0.5
1,904,081 + OKGIIK_08725 0.82 -0.5
1,904,081 + OKGIIK_08725 0.82 -1.2
1,904,081 + OKGIIK_08725 0.82 +0.4
1,904,081 + OKGIIK_08725 0.82 +1.5
1,904,082 - OKGIIK_08725 0.82 -0.8
1,904,554 + OKGIIK_08730 0.56 +0.2
1,904,555 - OKGIIK_08730 0.57 -0.7
1,904,844 + OKGIIK_08735 0.42 -0.4
1,904,845 - OKGIIK_08735 0.43 -1.0
1,904,940 + OKGIIK_08735 0.82 +0.6
1,904,941 - OKGIIK_08735 0.82 -2.3
1,905,079 + OKGIIK_08740 0.17 +1.2
1,905,151 + OKGIIK_08740 0.37 -2.6
1,905,152 - OKGIIK_08740 0.37 -0.9
1,905,152 - OKGIIK_08740 0.37 -0.5
1,905,178 + OKGIIK_08740 0.45 -0.7
1,905,178 + OKGIIK_08740 0.45 -2.1
1,905,179 - OKGIIK_08740 0.45 -1.0
1,905,239 + OKGIIK_08740 0.61 -0.2
1,905,239 + OKGIIK_08740 0.61 -1.4
1,905,239 + OKGIIK_08740 0.61 -0.6
1,905,240 - OKGIIK_08740 0.61 -0.1
1,905,568 + -1.4
1,905,568 + -1.4
1,905,568 + -0.1
1,905,686 + OKGIIK_08750 0.34 -1.1
1,905,687 - OKGIIK_08750 0.34 -1.0
1,905,687 - OKGIIK_08750 0.34 -0.9
1,905,687 - OKGIIK_08750 0.34 -1.4
1,905,841 + OKGIIK_08750 0.66 -0.4
1,905,841 + OKGIIK_08750 0.66 +0.0
1,905,841 + OKGIIK_08750 0.66 +1.1
1,905,841 + OKGIIK_08750 0.66 +0.9
1,905,841 + OKGIIK_08750 0.66 -2.1
1,905,841 + OKGIIK_08750 0.66 -1.6
1,905,842 - OKGIIK_08750 0.67 +1.5
1,905,842 - OKGIIK_08750 0.67 -1.5
1,905,842 - OKGIIK_08750 0.67 +1.5
1,905,842 - OKGIIK_08750 0.67 -0.0
1,905,842 - OKGIIK_08750 0.67 +1.2
1,905,845 + OKGIIK_08750 0.67 -0.2
1,905,846 - OKGIIK_08750 0.68 +1.7
1,905,897 + OKGIIK_08750 0.78 +0.0
1,905,897 + OKGIIK_08750 0.78 +0.5
1,905,898 - OKGIIK_08750 0.78 +0.2
1,905,898 - OKGIIK_08750 0.78 -0.8
1,905,942 + OKGIIK_08750 0.88 -0.6
1,905,942 + OKGIIK_08750 0.88 +2.1
1,905,942 + OKGIIK_08750 0.88 -0.1
1,905,943 - OKGIIK_08750 0.88 -0.4
1,905,945 + OKGIIK_08750 0.88 +0.5
1,905,945 + OKGIIK_08750 0.88 -1.2
1,905,945 + OKGIIK_08750 0.88 -1.2
1,905,945 + OKGIIK_08750 0.88 -1.1
1,905,946 - OKGIIK_08750 0.88 -2.3
1,905,946 - OKGIIK_08750 0.88 +1.3
1,905,946 - OKGIIK_08750 0.88 +0.5

Or see this region's nucleotide sequence