Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08135

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttruD and mgtE are separated by 159 nucleotidesmgtE and ispF overlap by 4 nucleotidesispF and ispD are separated by 10 nucleotides OKGIIK_08130: truD - tRNA pseudouridine(13) synthase TruD, at 1,787,515 to 1,788,531 truD OKGIIK_08135: mgtE - magnesium transporter, at 1,788,691 to 1,790,019 mgtE OKGIIK_08140: ispF - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,790,016 to 1,790,489 ispF OKGIIK_08145: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,790,500 to 1,791,198 ispD Position (kb) 1788 1789 1790 1791Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1787.938 kb on + strand, within truDat 1787.938 kb on + strand, within truDat 1787.938 kb on + strand, within truDat 1787.938 kb on + strand, within truDat 1787.939 kb on - strand, within truDat 1787.939 kb on - strand, within truDat 1787.939 kb on - strand, within truDat 1787.939 kb on - strand, within truDat 1787.939 kb on - strand, within truDat 1787.939 kb on - strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.062 kb on + strand, within truDat 1788.063 kb on - strand, within truDat 1788.063 kb on - strand, within truDat 1788.063 kb on - strand, within truDat 1788.063 kb on - strand, within truDat 1788.063 kb on - strand, within truDat 1788.317 kb on + strand, within truDat 1788.317 kb on + strand, within truDat 1788.318 kb on - strand, within truDat 1788.437 kb on + strandat 1788.437 kb on + strandat 1788.438 kb on - strandat 1788.438 kb on - strandat 1788.438 kb on - strandat 1788.516 kb on - strandat 1788.516 kb on - strandat 1788.516 kb on - strandat 1788.625 kb on + strandat 1788.625 kb on + strandat 1788.625 kb on + strandat 1788.625 kb on + strandat 1788.625 kb on + strandat 1788.625 kb on + strandat 1788.659 kb on + strandat 1788.659 kb on + strandat 1788.830 kb on + strand, within mgtEat 1788.830 kb on + strand, within mgtEat 1788.831 kb on - strand, within mgtEat 1788.831 kb on - strand, within mgtEat 1788.831 kb on - strand, within mgtEat 1788.831 kb on - strand, within mgtEat 1788.831 kb on - strand, within mgtEat 1788.831 kb on - strand, within mgtEat 1789.296 kb on - strand, within mgtEat 1789.322 kb on + strand, within mgtEat 1789.322 kb on + strand, within mgtEat 1789.322 kb on + strand, within mgtEat 1789.499 kb on + strand, within mgtEat 1789.500 kb on - strand, within mgtEat 1789.583 kb on + strand, within mgtEat 1789.584 kb on - strand, within mgtEat 1789.584 kb on - strand, within mgtE

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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1,787,938 + truD OKGIIK_08130 0.42 +2.2
1,787,938 + truD OKGIIK_08130 0.42 -0.1
1,787,938 + truD OKGIIK_08130 0.42 +0.9
1,787,938 + truD OKGIIK_08130 0.42 -0.1
1,787,939 - truD OKGIIK_08130 0.42 -1.1
1,787,939 - truD OKGIIK_08130 0.42 -0.8
1,787,939 - truD OKGIIK_08130 0.42 -0.6
1,787,939 - truD OKGIIK_08130 0.42 +0.9
1,787,939 - truD OKGIIK_08130 0.42 +1.0
1,787,939 - truD OKGIIK_08130 0.42 -1.1
1,788,062 + truD OKGIIK_08130 0.54 +0.2
1,788,062 + truD OKGIIK_08130 0.54 -0.9
1,788,062 + truD OKGIIK_08130 0.54 +0.2
1,788,062 + truD OKGIIK_08130 0.54 -1.1
1,788,062 + truD OKGIIK_08130 0.54 +0.6
1,788,062 + truD OKGIIK_08130 0.54 -1.8
1,788,062 + truD OKGIIK_08130 0.54 -1.8
1,788,062 + truD OKGIIK_08130 0.54 -0.3
1,788,062 + truD OKGIIK_08130 0.54 -0.6
1,788,062 + truD OKGIIK_08130 0.54 -0.8
1,788,062 + truD OKGIIK_08130 0.54 -0.4
1,788,063 - truD OKGIIK_08130 0.54 +1.5
1,788,063 - truD OKGIIK_08130 0.54 -1.1
1,788,063 - truD OKGIIK_08130 0.54 -0.3
1,788,063 - truD OKGIIK_08130 0.54 -0.4
1,788,063 - truD OKGIIK_08130 0.54 -0.6
1,788,317 + truD OKGIIK_08130 0.79 -1.6
1,788,317 + truD OKGIIK_08130 0.79 -0.6
1,788,318 - truD OKGIIK_08130 0.79 -0.7
1,788,437 + -0.2
1,788,437 + -2.6
1,788,438 - -0.2
1,788,438 - -0.4
1,788,438 - -0.1
1,788,516 - +0.4
1,788,516 - -0.9
1,788,516 - -0.4
1,788,625 + -0.6
1,788,625 + -0.8
1,788,625 + +2.9
1,788,625 + -1.5
1,788,625 + -1.7
1,788,625 + -1.1
1,788,659 + +2.0
1,788,659 + -1.4
1,788,830 + mgtE OKGIIK_08135 0.10 -0.6
1,788,830 + mgtE OKGIIK_08135 0.10 -0.6
1,788,831 - mgtE OKGIIK_08135 0.11 -1.7
1,788,831 - mgtE OKGIIK_08135 0.11 -0.7
1,788,831 - mgtE OKGIIK_08135 0.11 -0.8
1,788,831 - mgtE OKGIIK_08135 0.11 -0.5
1,788,831 - mgtE OKGIIK_08135 0.11 +2.6
1,788,831 - mgtE OKGIIK_08135 0.11 -0.4
1,789,296 - mgtE OKGIIK_08135 0.46 -2.1
1,789,322 + mgtE OKGIIK_08135 0.47 -0.1
1,789,322 + mgtE OKGIIK_08135 0.47 +0.2
1,789,322 + mgtE OKGIIK_08135 0.47 -1.2
1,789,499 + mgtE OKGIIK_08135 0.61 -0.1
1,789,500 - mgtE OKGIIK_08135 0.61 -0.4
1,789,583 + mgtE OKGIIK_08135 0.67 +0.6
1,789,584 - mgtE OKGIIK_08135 0.67 -0.9
1,789,584 - mgtE OKGIIK_08135 0.67 -0.9

Or see this region's nucleotide sequence