Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07125

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbamB and OKGIIK_07125 overlap by 4 nucleotidesOKGIIK_07125 and OKGIIK_07130 are separated by 157 nucleotides OKGIIK_07120: bamB - outer membrane protein assembly factor BamB, at 1,575,550 to 1,576,746 bamB OKGIIK_07125: OKGIIK_07125 - Ancillary SecYEG translocon subunit, at 1,576,743 to 1,577,393 _07125 OKGIIK_07130: OKGIIK_07130 - DUF4115 domain-containing protein, at 1,577,551 to 1,578,549 _07130 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -1 0 1 2at 1576.919 kb on - strand, within OKGIIK_07125at 1576.919 kb on - strand, within OKGIIK_07125at 1577.121 kb on + strand, within OKGIIK_07125at 1577.122 kb on - strand, within OKGIIK_07125at 1577.143 kb on + strand, within OKGIIK_07125at 1577.144 kb on - strand, within OKGIIK_07125at 1577.221 kb on + strand, within OKGIIK_07125at 1577.221 kb on + strand, within OKGIIK_07125at 1577.222 kb on - strand, within OKGIIK_07125at 1577.368 kb on + strandat 1577.368 kb on + strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.369 kb on - strandat 1577.377 kb on + strandat 1577.377 kb on + strandat 1577.378 kb on - strandat 1577.378 kb on - strandat 1577.512 kb on + strandat 1577.513 kb on - strandat 1577.656 kb on + strand, within OKGIIK_07130at 1577.656 kb on + strand, within OKGIIK_07130at 1577.656 kb on + strand, within OKGIIK_07130at 1577.656 kb on + strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130at 1577.657 kb on - strand, within OKGIIK_07130

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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1,576,919 - OKGIIK_07125 0.27 -1.5
1,576,919 - OKGIIK_07125 0.27 +0.2
1,577,121 + OKGIIK_07125 0.58 -0.1
1,577,122 - OKGIIK_07125 0.58 -0.5
1,577,143 + OKGIIK_07125 0.61 -1.0
1,577,144 - OKGIIK_07125 0.62 -0.3
1,577,221 + OKGIIK_07125 0.73 -0.3
1,577,221 + OKGIIK_07125 0.73 -0.5
1,577,222 - OKGIIK_07125 0.74 +1.9
1,577,368 + +0.5
1,577,368 + +0.7
1,577,369 - -0.6
1,577,369 - -0.7
1,577,369 - +0.3
1,577,369 - -1.0
1,577,369 - +0.4
1,577,369 - -1.5
1,577,377 + -0.3
1,577,377 + +1.3
1,577,378 - +0.3
1,577,378 - -0.7
1,577,512 + -1.4
1,577,513 - +1.6
1,577,656 + OKGIIK_07130 0.11 +0.2
1,577,656 + OKGIIK_07130 0.11 -1.0
1,577,656 + OKGIIK_07130 0.11 +0.9
1,577,656 + OKGIIK_07130 0.11 +1.0
1,577,657 - OKGIIK_07130 0.11 -1.3
1,577,657 - OKGIIK_07130 0.11 -0.3
1,577,657 - OKGIIK_07130 0.11 +2.3
1,577,657 - OKGIIK_07130 0.11 +1.0
1,577,657 - OKGIIK_07130 0.11 -0.2
1,577,657 - OKGIIK_07130 0.11 +2.5
1,577,657 - OKGIIK_07130 0.11 +0.3
1,577,657 - OKGIIK_07130 0.11 -0.3
1,577,657 - OKGIIK_07130 0.11 +0.1
1,577,657 - OKGIIK_07130 0.11 -0.2
1,577,657 - OKGIIK_07130 0.11 -0.5
1,577,657 - OKGIIK_07130 0.11 +0.0
1,577,657 - OKGIIK_07130 0.11 +0.3
1,577,657 - OKGIIK_07130 0.11 -0.7
1,577,657 - OKGIIK_07130 0.11 +0.6
1,577,657 - OKGIIK_07130 0.11 -0.3
1,577,657 - OKGIIK_07130 0.11 -1.3
1,577,657 - OKGIIK_07130 0.11 +0.7
1,577,657 - OKGIIK_07130 0.11 +0.7
1,577,657 - OKGIIK_07130 0.11 +0.7
1,577,657 - OKGIIK_07130 0.11 -0.4

Or see this region's nucleotide sequence