Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07105

Experiment: R2A_PIPES with Cadmium chloride 128 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfolD and OKGIIK_07105 are separated by 64 nucleotidesOKGIIK_07105 and moeB overlap by 4 nucleotides OKGIIK_07100: folD - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 1,571,412 to 1,572,281 folD OKGIIK_07105: OKGIIK_07105 - Ribosomal-protein-serine acetyltransferase, at 1,572,346 to 1,572,915 _07105 OKGIIK_07110: moeB - molybdopterin-synthase adenylyltransferase MoeB, at 1,572,912 to 1,574,081 moeB Position (kb) 1572 1573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.348 kb on - strandat 1571.349 kb on + strandat 1571.349 kb on + strandat 1571.349 kb on + strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1571.350 kb on - strandat 1572.298 kb on - strandat 1572.502 kb on + strand, within OKGIIK_07105at 1572.502 kb on + strand, within OKGIIK_07105at 1572.502 kb on + strand, within OKGIIK_07105at 1572.502 kb on + strand, within OKGIIK_07105at 1572.503 kb on - strand, within OKGIIK_07105at 1572.503 kb on - strand, within OKGIIK_07105at 1572.886 kb on + strandat 1572.887 kb on - strandat 1572.913 kb on + strandat 1572.913 kb on + strandat 1572.913 kb on + strandat 1572.961 kb on - strandat 1573.273 kb on + strand, within moeBat 1573.273 kb on + strand, within moeBat 1573.273 kb on + strand, within moeBat 1573.273 kb on + strand, within moeBat 1573.273 kb on + strand, within moeBat 1573.273 kb on + strand, within moeBat 1573.273 kb on + strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.274 kb on - strand, within moeBat 1573.318 kb on + strand, within moeBat 1573.319 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.580 kb on - strand, within moeBat 1573.690 kb on + strand, within moeB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
remove
1,571,348 - -0.4
1,571,348 - +1.3
1,571,348 - +1.7
1,571,348 - -1.6
1,571,348 - -0.5
1,571,348 - +0.5
1,571,348 - -0.5
1,571,348 - +0.8
1,571,348 - -0.9
1,571,349 + -1.7
1,571,349 + -1.5
1,571,349 + -1.5
1,571,350 - -1.6
1,571,350 - +0.3
1,571,350 - -0.2
1,571,350 - -1.6
1,571,350 - -1.8
1,571,350 - +0.0
1,571,350 - -0.3
1,571,350 - -1.5
1,571,350 - +0.2
1,572,298 - -0.3
1,572,502 + OKGIIK_07105 0.27 -2.8
1,572,502 + OKGIIK_07105 0.27 -0.1
1,572,502 + OKGIIK_07105 0.27 -2.1
1,572,502 + OKGIIK_07105 0.27 -1.2
1,572,503 - OKGIIK_07105 0.28 +0.3
1,572,503 - OKGIIK_07105 0.28 -0.5
1,572,886 + -0.5
1,572,887 - +0.7
1,572,913 + +0.9
1,572,913 + -0.7
1,572,913 + -0.9
1,572,961 - -0.3
1,573,273 + moeB OKGIIK_07110 0.31 +0.2
1,573,273 + moeB OKGIIK_07110 0.31 +0.3
1,573,273 + moeB OKGIIK_07110 0.31 +0.8
1,573,273 + moeB OKGIIK_07110 0.31 -0.9
1,573,273 + moeB OKGIIK_07110 0.31 +1.7
1,573,273 + moeB OKGIIK_07110 0.31 -0.9
1,573,273 + moeB OKGIIK_07110 0.31 -0.1
1,573,274 - moeB OKGIIK_07110 0.31 -0.7
1,573,274 - moeB OKGIIK_07110 0.31 +1.0
1,573,274 - moeB OKGIIK_07110 0.31 +1.3
1,573,274 - moeB OKGIIK_07110 0.31 +1.9
1,573,274 - moeB OKGIIK_07110 0.31 +0.7
1,573,274 - moeB OKGIIK_07110 0.31 +0.0
1,573,274 - moeB OKGIIK_07110 0.31 -1.3
1,573,274 - moeB OKGIIK_07110 0.31 -0.5
1,573,318 + moeB OKGIIK_07110 0.35 -0.9
1,573,319 - moeB OKGIIK_07110 0.35 -0.3
1,573,580 - moeB OKGIIK_07110 0.57 +0.3
1,573,580 - moeB OKGIIK_07110 0.57 -0.1
1,573,580 - moeB OKGIIK_07110 0.57 -0.5
1,573,580 - moeB OKGIIK_07110 0.57 -1.6
1,573,580 - moeB OKGIIK_07110 0.57 +0.3
1,573,580 - moeB OKGIIK_07110 0.57 -0.1
1,573,580 - moeB OKGIIK_07110 0.57 -0.5
1,573,580 - moeB OKGIIK_07110 0.57 -0.7
1,573,690 + moeB OKGIIK_07110 0.66 +1.3

Or see this region's nucleotide sequence