Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_06195 and OKGIIK_06200 are separated by 182 nucleotides OKGIIK_06200 and cadA are separated by 45 nucleotides
OKGIIK_06195: OKGIIK_06195 - Cytochrome C, at 1,360,567 to 1,361,676
_06195
OKGIIK_06200: OKGIIK_06200 - DUF411 domain-containing protein, at 1,361,859 to 1,362,230
_06200
OKGIIK_06205: cadA - cadmium-translocating P-type ATPase, at 1,362,276 to 1,364,624
cadA
Position (kb) 1361
1362
1363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1360.876 kb on + strand, within OKGIIK_06195 at 1361.054 kb on - strand, within OKGIIK_06195 at 1361.054 kb on - strand, within OKGIIK_06195 at 1361.054 kb on - strand, within OKGIIK_06195 at 1361.224 kb on - strand, within OKGIIK_06195 at 1361.432 kb on - strand, within OKGIIK_06195 at 1361.772 kb on + strand at 1361.772 kb on + strand at 1361.879 kb on + strand at 1361.912 kb on + strand, within OKGIIK_06200 at 1361.912 kb on + strand, within OKGIIK_06200 at 1361.912 kb on + strand, within OKGIIK_06200 at 1362.168 kb on + strand, within OKGIIK_06200 at 1362.168 kb on + strand, within OKGIIK_06200 at 1362.168 kb on + strand, within OKGIIK_06200 at 1362.168 kb on + strand, within OKGIIK_06200 at 1362.168 kb on + strand, within OKGIIK_06200 at 1362.168 kb on + strand, within OKGIIK_06200 at 1362.169 kb on - strand, within OKGIIK_06200 at 1362.169 kb on - strand, within OKGIIK_06200 at 1362.418 kb on + strand at 1362.418 kb on + strand at 1362.418 kb on + strand at 1362.419 kb on - strand at 1362.419 kb on - strand at 1362.419 kb on - strand at 1362.477 kb on + strand at 1362.477 kb on + strand at 1362.477 kb on + strand at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.531 kb on + strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.532 kb on - strand, within cadA at 1362.536 kb on - strand, within cadA at 1362.703 kb on + strand, within cadA at 1362.703 kb on + strand, within cadA at 1362.769 kb on + strand, within cadA at 1362.769 kb on + strand, within cadA at 1362.769 kb on + strand, within cadA at 1362.770 kb on - strand, within cadA at 1362.917 kb on - strand, within cadA at 1362.966 kb on + strand, within cadA at 1362.966 kb on + strand, within cadA at 1363.015 kb on + strand, within cadA at 1363.016 kb on - strand, within cadA at 1363.016 kb on - strand, within cadA at 1363.016 kb on - strand, within cadA at 1363.067 kb on - strand, within cadA at 1363.163 kb on - strand, within cadA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 1,360,876 + OKGIIK_06195 0.28 -1.0 1,361,054 - OKGIIK_06195 0.44 -2.0 1,361,054 - OKGIIK_06195 0.44 -0.9 1,361,054 - OKGIIK_06195 0.44 -1.6 1,361,224 - OKGIIK_06195 0.59 -0.3 1,361,432 - OKGIIK_06195 0.78 -0.5 1,361,772 + +1.6 1,361,772 + -1.5 1,361,879 + +0.6 1,361,912 + OKGIIK_06200 0.14 -1.7 1,361,912 + OKGIIK_06200 0.14 +0.3 1,361,912 + OKGIIK_06200 0.14 +1.0 1,362,168 + OKGIIK_06200 0.83 -0.5 1,362,168 + OKGIIK_06200 0.83 +0.5 1,362,168 + OKGIIK_06200 0.83 -0.2 1,362,168 + OKGIIK_06200 0.83 -0.0 1,362,168 + OKGIIK_06200 0.83 -1.2 1,362,168 + OKGIIK_06200 0.83 -1.5 1,362,169 - OKGIIK_06200 0.83 -1.0 1,362,169 - OKGIIK_06200 0.83 -0.4 1,362,418 + -1.0 1,362,418 + -0.9 1,362,418 + +1.8 1,362,419 - -0.6 1,362,419 - +2.0 1,362,419 - +0.6 1,362,477 + -1.2 1,362,477 + -1.3 1,362,477 + +1.9 1,362,531 + cadA OKGIIK_06205 0.11 +1.0 1,362,531 + cadA OKGIIK_06205 0.11 +1.2 1,362,531 + cadA OKGIIK_06205 0.11 -0.3 1,362,531 + cadA OKGIIK_06205 0.11 +0.4 1,362,531 + cadA OKGIIK_06205 0.11 +0.3 1,362,531 + cadA OKGIIK_06205 0.11 +0.7 1,362,531 + cadA OKGIIK_06205 0.11 -0.6 1,362,531 + cadA OKGIIK_06205 0.11 -1.3 1,362,531 + cadA OKGIIK_06205 0.11 -0.3 1,362,531 + cadA OKGIIK_06205 0.11 -0.5 1,362,531 + cadA OKGIIK_06205 0.11 -0.9 1,362,531 + cadA OKGIIK_06205 0.11 +0.7 1,362,531 + cadA OKGIIK_06205 0.11 -0.3 1,362,531 + cadA OKGIIK_06205 0.11 -0.0 1,362,531 + cadA OKGIIK_06205 0.11 -1.0 1,362,531 + cadA OKGIIK_06205 0.11 -0.7 1,362,531 + cadA OKGIIK_06205 0.11 -1.3 1,362,531 + cadA OKGIIK_06205 0.11 +0.7 1,362,531 + cadA OKGIIK_06205 0.11 +0.4 1,362,531 + cadA OKGIIK_06205 0.11 +0.3 1,362,531 + cadA OKGIIK_06205 0.11 +0.3 1,362,531 + cadA OKGIIK_06205 0.11 -0.6 1,362,531 + cadA OKGIIK_06205 0.11 +0.5 1,362,531 + cadA OKGIIK_06205 0.11 -0.3 1,362,531 + cadA OKGIIK_06205 0.11 +2.0 1,362,531 + cadA OKGIIK_06205 0.11 -0.0 1,362,531 + cadA OKGIIK_06205 0.11 +0.1 1,362,531 + cadA OKGIIK_06205 0.11 +0.6 1,362,531 + cadA OKGIIK_06205 0.11 -0.0 1,362,531 + cadA OKGIIK_06205 0.11 -0.9 1,362,531 + cadA OKGIIK_06205 0.11 -0.5 1,362,531 + cadA OKGIIK_06205 0.11 -0.5 1,362,532 - cadA OKGIIK_06205 0.11 -1.2 1,362,532 - cadA OKGIIK_06205 0.11 -0.2 1,362,532 - cadA OKGIIK_06205 0.11 -0.3 1,362,532 - cadA OKGIIK_06205 0.11 -0.7 1,362,532 - cadA OKGIIK_06205 0.11 -0.2 1,362,532 - cadA OKGIIK_06205 0.11 -0.1 1,362,532 - cadA OKGIIK_06205 0.11 -0.6 1,362,532 - cadA OKGIIK_06205 0.11 -1.7 1,362,532 - cadA OKGIIK_06205 0.11 -1.6 1,362,532 - cadA OKGIIK_06205 0.11 -0.0 1,362,532 - cadA OKGIIK_06205 0.11 -1.4 1,362,532 - cadA OKGIIK_06205 0.11 +0.5 1,362,532 - cadA OKGIIK_06205 0.11 -0.2 1,362,532 - cadA OKGIIK_06205 0.11 +0.3 1,362,532 - cadA OKGIIK_06205 0.11 -0.5 1,362,532 - cadA OKGIIK_06205 0.11 +0.3 1,362,532 - cadA OKGIIK_06205 0.11 +1.0 1,362,532 - cadA OKGIIK_06205 0.11 -0.3 1,362,532 - cadA OKGIIK_06205 0.11 -0.1 1,362,532 - cadA OKGIIK_06205 0.11 -1.0 1,362,532 - cadA OKGIIK_06205 0.11 -1.5 1,362,532 - cadA OKGIIK_06205 0.11 +1.1 1,362,532 - cadA OKGIIK_06205 0.11 +0.7 1,362,532 - cadA OKGIIK_06205 0.11 +1.6 1,362,532 - cadA OKGIIK_06205 0.11 +0.5 1,362,532 - cadA OKGIIK_06205 0.11 -0.0 1,362,532 - cadA OKGIIK_06205 0.11 -0.4 1,362,532 - cadA OKGIIK_06205 0.11 +1.1 1,362,532 - cadA OKGIIK_06205 0.11 -0.7 1,362,532 - cadA OKGIIK_06205 0.11 -0.3 1,362,532 - cadA OKGIIK_06205 0.11 -0.2 1,362,532 - cadA OKGIIK_06205 0.11 +1.3 1,362,532 - cadA OKGIIK_06205 0.11 -0.3 1,362,532 - cadA OKGIIK_06205 0.11 +0.9 1,362,536 - cadA OKGIIK_06205 0.11 -1.4 1,362,703 + cadA OKGIIK_06205 0.18 -1.4 1,362,703 + cadA OKGIIK_06205 0.18 -0.0 1,362,769 + cadA OKGIIK_06205 0.21 -0.0 1,362,769 + cadA OKGIIK_06205 0.21 -0.7 1,362,769 + cadA OKGIIK_06205 0.21 -0.0 1,362,770 - cadA OKGIIK_06205 0.21 -1.3 1,362,917 - cadA OKGIIK_06205 0.27 +2.3 1,362,966 + cadA OKGIIK_06205 0.29 -1.3 1,362,966 + cadA OKGIIK_06205 0.29 +0.2 1,363,015 + cadA OKGIIK_06205 0.31 -0.9 1,363,016 - cadA OKGIIK_06205 0.32 -1.0 1,363,016 - cadA OKGIIK_06205 0.32 +1.3 1,363,016 - cadA OKGIIK_06205 0.32 -0.5 1,363,067 - cadA OKGIIK_06205 0.34 -0.4 1,363,163 - cadA OKGIIK_06205 0.38 -0.0
Or see this region's nucleotide sequence