Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt merA and merD are separated by 16 nucleotides merD and merE overlap by 4 nucleotides merE and yjbI are separated by 87 nucleotides yjbI and lpd are separated by 11 nucleotides
OKGIIK_06135: merA - mercury(II) reductase, at 1,348,533 to 1,350,257
merA
OKGIIK_06140: merD - mercuric resistance transcriptional repressor protein MerD, at 1,350,274 to 1,350,639
merD
OKGIIK_06145: merE - broad-spectrum mercury transporter MerE, at 1,350,636 to 1,350,854
merE
OKGIIK_06150: yjbI - Truncated hemoglobin YjbI, at 1,350,942 to 1,351,319
yjbI
OKGIIK_06155: lpd - NAD(P)/FAD-dependent oxidoreductase, at 1,351,331 to 1,352,686
lpd
Position (kb) 1350
1351
1352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1350.030 kb on - strand, within merA at 1350.030 kb on - strand, within merA at 1350.283 kb on + strand at 1350.284 kb on - strand at 1350.284 kb on - strand at 1350.284 kb on - strand at 1350.327 kb on + strand, within merD at 1350.328 kb on - strand, within merD at 1350.340 kb on + strand, within merD at 1350.340 kb on + strand, within merD at 1350.341 kb on - strand, within merD at 1350.388 kb on + strand, within merD at 1350.510 kb on + strand, within merD at 1350.510 kb on + strand, within merD at 1350.536 kb on + strand, within merD at 1350.669 kb on + strand, within merE at 1350.740 kb on + strand, within merE at 1350.829 kb on + strand, within merE at 1350.850 kb on + strand at 1350.850 kb on + strand at 1350.850 kb on + strand at 1350.850 kb on + strand at 1350.851 kb on - strand at 1350.851 kb on - strand at 1350.851 kb on - strand at 1350.851 kb on - strand at 1350.929 kb on + strand at 1350.999 kb on + strand, within yjbI at 1351.000 kb on - strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.064 kb on + strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.065 kb on - strand, within yjbI at 1351.066 kb on + strand, within yjbI at 1351.066 kb on + strand, within yjbI at 1351.066 kb on + strand, within yjbI at 1351.066 kb on + strand, within yjbI at 1351.066 kb on + strand, within yjbI at 1351.066 kb on + strand, within yjbI at 1351.067 kb on - strand, within yjbI at 1351.067 kb on - strand, within yjbI at 1351.067 kb on - strand, within yjbI at 1351.083 kb on + strand, within yjbI at 1351.083 kb on + strand, within yjbI at 1351.084 kb on - strand, within yjbI at 1351.084 kb on - strand, within yjbI at 1351.084 kb on - strand, within yjbI at 1351.204 kb on + strand, within yjbI at 1351.204 kb on + strand, within yjbI at 1351.205 kb on - strand, within yjbI at 1351.317 kb on + strand at 1351.317 kb on + strand at 1351.317 kb on + strand at 1351.317 kb on + strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.318 kb on - strand at 1351.438 kb on + strand at 1351.438 kb on + strand at 1351.439 kb on - strand at 1351.448 kb on + strand at 1351.456 kb on + strand at 1351.456 kb on + strand at 1351.457 kb on - strand at 1351.457 kb on - strand at 1351.457 kb on - strand at 1351.467 kb on + strand, within lpd at 1351.468 kb on - strand, within lpd at 1351.917 kb on + strand, within lpd at 1351.918 kb on - strand, within lpd at 1351.918 kb on - strand, within lpd at 1351.918 kb on - strand, within lpd at 1351.920 kb on + strand, within lpd at 1351.920 kb on + strand, within lpd at 1351.920 kb on + strand, within lpd at 1351.921 kb on - strand, within lpd at 1351.921 kb on - strand, within lpd at 1352.066 kb on + strand, within lpd at 1352.066 kb on + strand, within lpd at 1352.066 kb on + strand, within lpd at 1352.066 kb on + strand, within lpd at 1352.067 kb on - strand, within lpd at 1352.183 kb on - strand, within lpd
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 1,350,030 - merA OKGIIK_06135 0.87 -2.4 1,350,030 - merA OKGIIK_06135 0.87 +0.5 1,350,283 + +0.6 1,350,284 - +0.4 1,350,284 - -1.4 1,350,284 - +1.9 1,350,327 + merD OKGIIK_06140 0.14 +0.3 1,350,328 - merD OKGIIK_06140 0.15 +0.3 1,350,340 + merD OKGIIK_06140 0.18 -0.5 1,350,340 + merD OKGIIK_06140 0.18 -1.0 1,350,341 - merD OKGIIK_06140 0.18 -1.2 1,350,388 + merD OKGIIK_06140 0.31 -0.0 1,350,510 + merD OKGIIK_06140 0.64 -0.0 1,350,510 + merD OKGIIK_06140 0.64 +0.1 1,350,536 + merD OKGIIK_06140 0.72 +0.3 1,350,669 + merE OKGIIK_06145 0.15 -0.7 1,350,740 + merE OKGIIK_06145 0.47 +1.0 1,350,829 + merE OKGIIK_06145 0.88 -1.7 1,350,850 + -0.1 1,350,850 + -1.6 1,350,850 + -1.6 1,350,850 + +0.3 1,350,851 - +0.2 1,350,851 - -0.8 1,350,851 - +0.3 1,350,851 - +2.6 1,350,929 + -0.7 1,350,999 + yjbI OKGIIK_06150 0.15 -1.1 1,351,000 - yjbI OKGIIK_06150 0.15 -1.1 1,351,064 + yjbI OKGIIK_06150 0.32 +0.5 1,351,064 + yjbI OKGIIK_06150 0.32 +0.7 1,351,064 + yjbI OKGIIK_06150 0.32 -0.7 1,351,064 + yjbI OKGIIK_06150 0.32 -0.9 1,351,064 + yjbI OKGIIK_06150 0.32 -1.0 1,351,064 + yjbI OKGIIK_06150 0.32 +0.3 1,351,064 + yjbI OKGIIK_06150 0.32 -1.1 1,351,064 + yjbI OKGIIK_06150 0.32 +1.7 1,351,064 + yjbI OKGIIK_06150 0.32 +1.0 1,351,064 + yjbI OKGIIK_06150 0.32 -0.3 1,351,064 + yjbI OKGIIK_06150 0.32 -0.1 1,351,064 + yjbI OKGIIK_06150 0.32 -1.1 1,351,064 + yjbI OKGIIK_06150 0.32 +0.3 1,351,064 + yjbI OKGIIK_06150 0.32 +0.2 1,351,064 + yjbI OKGIIK_06150 0.32 -2.0 1,351,064 + yjbI OKGIIK_06150 0.32 -0.3 1,351,064 + yjbI OKGIIK_06150 0.32 -1.4 1,351,064 + yjbI OKGIIK_06150 0.32 -1.0 1,351,064 + yjbI OKGIIK_06150 0.32 -1.0 1,351,064 + yjbI OKGIIK_06150 0.32 -0.5 1,351,065 - yjbI OKGIIK_06150 0.33 -1.6 1,351,065 - yjbI OKGIIK_06150 0.33 -0.0 1,351,065 - yjbI OKGIIK_06150 0.33 +1.3 1,351,065 - yjbI OKGIIK_06150 0.33 -2.4 1,351,065 - yjbI OKGIIK_06150 0.33 -0.5 1,351,065 - yjbI OKGIIK_06150 0.33 +0.9 1,351,065 - yjbI OKGIIK_06150 0.33 +0.8 1,351,065 - yjbI OKGIIK_06150 0.33 -0.5 1,351,065 - yjbI OKGIIK_06150 0.33 +0.7 1,351,065 - yjbI OKGIIK_06150 0.33 -0.9 1,351,066 + yjbI OKGIIK_06150 0.33 -1.1 1,351,066 + yjbI OKGIIK_06150 0.33 -1.7 1,351,066 + yjbI OKGIIK_06150 0.33 +0.5 1,351,066 + yjbI OKGIIK_06150 0.33 +1.6 1,351,066 + yjbI OKGIIK_06150 0.33 +0.4 1,351,066 + yjbI OKGIIK_06150 0.33 -0.3 1,351,067 - yjbI OKGIIK_06150 0.33 +1.3 1,351,067 - yjbI OKGIIK_06150 0.33 -1.5 1,351,067 - yjbI OKGIIK_06150 0.33 -0.5 1,351,083 + yjbI OKGIIK_06150 0.37 -1.1 1,351,083 + yjbI OKGIIK_06150 0.37 -1.0 1,351,084 - yjbI OKGIIK_06150 0.38 -0.3 1,351,084 - yjbI OKGIIK_06150 0.38 -0.3 1,351,084 - yjbI OKGIIK_06150 0.38 -0.5 1,351,204 + yjbI OKGIIK_06150 0.69 -1.0 1,351,204 + yjbI OKGIIK_06150 0.69 -0.9 1,351,205 - yjbI OKGIIK_06150 0.70 +0.3 1,351,317 + +0.4 1,351,317 + +0.9 1,351,317 + -1.0 1,351,317 + +1.5 1,351,318 - -1.0 1,351,318 - -0.7 1,351,318 - -0.4 1,351,318 - -0.9 1,351,318 - -0.0 1,351,318 - -0.2 1,351,318 - -0.9 1,351,318 - -0.5 1,351,438 + -1.9 1,351,438 + -0.0 1,351,439 - -2.4 1,351,448 + -0.0 1,351,456 + -0.5 1,351,456 + +2.0 1,351,457 - -0.7 1,351,457 - +0.1 1,351,457 - -3.0 1,351,467 + lpd OKGIIK_06155 0.10 -0.5 1,351,468 - lpd OKGIIK_06155 0.10 -2.0 1,351,917 + lpd OKGIIK_06155 0.43 -1.4 1,351,918 - lpd OKGIIK_06155 0.43 -1.3 1,351,918 - lpd OKGIIK_06155 0.43 +0.5 1,351,918 - lpd OKGIIK_06155 0.43 +1.1 1,351,920 + lpd OKGIIK_06155 0.43 -0.7 1,351,920 + lpd OKGIIK_06155 0.43 +1.2 1,351,920 + lpd OKGIIK_06155 0.43 -1.0 1,351,921 - lpd OKGIIK_06155 0.44 -0.5 1,351,921 - lpd OKGIIK_06155 0.44 +0.4 1,352,066 + lpd OKGIIK_06155 0.54 -1.7 1,352,066 + lpd OKGIIK_06155 0.54 +0.3 1,352,066 + lpd OKGIIK_06155 0.54 +0.3 1,352,066 + lpd OKGIIK_06155 0.54 +1.1 1,352,067 - lpd OKGIIK_06155 0.54 +1.1 1,352,183 - lpd OKGIIK_06155 0.63 -0.1
Or see this region's nucleotide sequence