Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06110

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_06100 and OKGIIK_06105 are separated by 11 nucleotidesOKGIIK_06105 and OKGIIK_06110 overlap by 26 nucleotidesOKGIIK_06110 and merT are separated by 85 nucleotidesmerT and merP are separated by 19 nucleotidesmerP and merC are separated by 19 nucleotides OKGIIK_06100: OKGIIK_06100 - DUF2282 domain-containing protein, at 1,345,169 to 1,345,453 _06100 OKGIIK_06105: OKGIIK_06105 - UPF0276 protein CV_3513, at 1,345,465 to 1,346,337 _06105 OKGIIK_06110: OKGIIK_06110 - DUF2063 domain-containing protein, at 1,346,312 to 1,347,061 _06110 OKGIIK_06115: merT - mercuric ion transporter MerT, at 1,347,147 to 1,347,509 merT OKGIIK_06120: merP - mercury resistance system periplasmic binding protein MerP, at 1,347,529 to 1,347,807 merP OKGIIK_06125: merC - organomercurial transporter MerC, at 1,347,827 to 1,348,234 merC Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1 2at 1345.859 kb on + strand, within OKGIIK_06105at 1345.859 kb on + strand, within OKGIIK_06105at 1345.859 kb on + strand, within OKGIIK_06105at 1345.860 kb on - strand, within OKGIIK_06105at 1345.927 kb on + strand, within OKGIIK_06105at 1345.927 kb on + strand, within OKGIIK_06105at 1345.927 kb on + strand, within OKGIIK_06105at 1345.928 kb on - strand, within OKGIIK_06105at 1345.928 kb on - strand, within OKGIIK_06105at 1345.928 kb on - strand, within OKGIIK_06105at 1345.928 kb on - strand, within OKGIIK_06105at 1345.982 kb on + strand, within OKGIIK_06105at 1345.982 kb on + strand, within OKGIIK_06105at 1345.983 kb on - strand, within OKGIIK_06105at 1346.026 kb on + strand, within OKGIIK_06105at 1346.026 kb on + strand, within OKGIIK_06105at 1346.027 kb on - strand, within OKGIIK_06105at 1346.065 kb on + strand, within OKGIIK_06105at 1346.065 kb on + strand, within OKGIIK_06105at 1346.066 kb on - strand, within OKGIIK_06105at 1346.066 kb on - strand, within OKGIIK_06105at 1346.066 kb on - strand, within OKGIIK_06105at 1346.119 kb on - strand, within OKGIIK_06105at 1346.119 kb on - strand, within OKGIIK_06105at 1346.147 kb on + strand, within OKGIIK_06105at 1346.197 kb on + strand, within OKGIIK_06105at 1346.198 kb on - strand, within OKGIIK_06105at 1346.219 kb on + strand, within OKGIIK_06105at 1346.642 kb on + strand, within OKGIIK_06110at 1346.642 kb on + strand, within OKGIIK_06110at 1346.642 kb on + strand, within OKGIIK_06110at 1346.642 kb on + strand, within OKGIIK_06110at 1346.643 kb on - strand, within OKGIIK_06110at 1346.643 kb on - strand, within OKGIIK_06110at 1346.643 kb on - strand, within OKGIIK_06110at 1346.785 kb on + strand, within OKGIIK_06110at 1346.785 kb on + strand, within OKGIIK_06110at 1346.786 kb on - strand, within OKGIIK_06110at 1346.786 kb on - strand, within OKGIIK_06110at 1346.972 kb on + strand, within OKGIIK_06110at 1346.973 kb on - strand, within OKGIIK_06110at 1347.090 kb on - strandat 1347.093 kb on + strandat 1347.093 kb on + strandat 1347.093 kb on + strandat 1347.094 kb on - strandat 1347.094 kb on - strandat 1347.118 kb on + strandat 1347.119 kb on - strandat 1347.156 kb on - strandat 1347.203 kb on + strand, within merTat 1347.203 kb on + strand, within merTat 1347.214 kb on + strand, within merTat 1347.214 kb on + strand, within merTat 1347.214 kb on + strand, within merTat 1347.315 kb on + strand, within merTat 1347.315 kb on + strand, within merTat 1347.315 kb on + strand, within merTat 1347.316 kb on - strand, within merTat 1347.320 kb on + strand, within merTat 1347.366 kb on + strand, within merTat 1347.366 kb on + strand, within merTat 1347.367 kb on - strand, within merTat 1347.367 kb on - strand, within merTat 1347.377 kb on + strand, within merTat 1347.429 kb on + strand, within merTat 1347.429 kb on + strand, within merTat 1347.429 kb on + strand, within merTat 1347.505 kb on - strandat 1347.505 kb on - strandat 1347.799 kb on - strandat 1347.975 kb on + strand, within merCat 1347.975 kb on + strand, within merCat 1347.975 kb on + strand, within merCat 1347.975 kb on + strand, within merCat 1347.975 kb on + strand, within merCat 1347.986 kb on + strand, within merCat 1347.986 kb on + strand, within merCat 1347.986 kb on + strand, within merCat 1347.987 kb on - strand, within merCat 1347.987 kb on - strand, within merCat 1347.987 kb on - strand, within merCat 1347.987 kb on - strand, within merCat 1347.987 kb on - strand, within merCat 1348.059 kb on + strand, within merC

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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1,345,859 + OKGIIK_06105 0.45 +0.3
1,345,859 + OKGIIK_06105 0.45 -0.0
1,345,859 + OKGIIK_06105 0.45 -0.6
1,345,860 - OKGIIK_06105 0.45 +1.3
1,345,927 + OKGIIK_06105 0.53 +0.3
1,345,927 + OKGIIK_06105 0.53 +0.5
1,345,927 + OKGIIK_06105 0.53 -0.3
1,345,928 - OKGIIK_06105 0.53 +1.6
1,345,928 - OKGIIK_06105 0.53 -1.6
1,345,928 - OKGIIK_06105 0.53 -0.4
1,345,928 - OKGIIK_06105 0.53 -0.3
1,345,982 + OKGIIK_06105 0.59 -1.5
1,345,982 + OKGIIK_06105 0.59 +0.5
1,345,983 - OKGIIK_06105 0.59 +0.4
1,346,026 + OKGIIK_06105 0.64 -1.2
1,346,026 + OKGIIK_06105 0.64 +1.7
1,346,027 - OKGIIK_06105 0.64 -0.3
1,346,065 + OKGIIK_06105 0.69 +0.5
1,346,065 + OKGIIK_06105 0.69 -1.6
1,346,066 - OKGIIK_06105 0.69 -1.0
1,346,066 - OKGIIK_06105 0.69 -0.8
1,346,066 - OKGIIK_06105 0.69 +2.3
1,346,119 - OKGIIK_06105 0.75 +0.3
1,346,119 - OKGIIK_06105 0.75 -0.3
1,346,147 + OKGIIK_06105 0.78 -1.6
1,346,197 + OKGIIK_06105 0.84 -2.0
1,346,198 - OKGIIK_06105 0.84 -0.5
1,346,219 + OKGIIK_06105 0.86 +0.3
1,346,642 + OKGIIK_06110 0.44 -0.8
1,346,642 + OKGIIK_06110 0.44 -1.4
1,346,642 + OKGIIK_06110 0.44 -1.6
1,346,642 + OKGIIK_06110 0.44 -0.7
1,346,643 - OKGIIK_06110 0.44 +0.4
1,346,643 - OKGIIK_06110 0.44 -1.3
1,346,643 - OKGIIK_06110 0.44 -0.5
1,346,785 + OKGIIK_06110 0.63 -0.3
1,346,785 + OKGIIK_06110 0.63 -0.3
1,346,786 - OKGIIK_06110 0.63 +0.3
1,346,786 - OKGIIK_06110 0.63 -1.2
1,346,972 + OKGIIK_06110 0.88 -2.7
1,346,973 - OKGIIK_06110 0.88 +1.0
1,347,090 - -0.5
1,347,093 + -0.6
1,347,093 + -0.0
1,347,093 + -0.7
1,347,094 - +0.3
1,347,094 - +0.2
1,347,118 + -0.0
1,347,119 - -0.3
1,347,156 - -1.0
1,347,203 + merT OKGIIK_06115 0.15 -1.1
1,347,203 + merT OKGIIK_06115 0.15 +0.7
1,347,214 + merT OKGIIK_06115 0.18 -0.9
1,347,214 + merT OKGIIK_06115 0.18 +0.6
1,347,214 + merT OKGIIK_06115 0.18 -0.5
1,347,315 + merT OKGIIK_06115 0.46 -0.5
1,347,315 + merT OKGIIK_06115 0.46 -2.1
1,347,315 + merT OKGIIK_06115 0.46 -0.5
1,347,316 - merT OKGIIK_06115 0.47 -0.5
1,347,320 + merT OKGIIK_06115 0.48 -0.0
1,347,366 + merT OKGIIK_06115 0.60 -0.3
1,347,366 + merT OKGIIK_06115 0.60 +1.0
1,347,367 - merT OKGIIK_06115 0.61 +0.4
1,347,367 - merT OKGIIK_06115 0.61 -0.9
1,347,377 + merT OKGIIK_06115 0.63 -2.0
1,347,429 + merT OKGIIK_06115 0.78 -0.3
1,347,429 + merT OKGIIK_06115 0.78 -0.6
1,347,429 + merT OKGIIK_06115 0.78 +0.5
1,347,505 - +0.7
1,347,505 - -1.6
1,347,799 - -0.5
1,347,975 + merC OKGIIK_06125 0.36 -0.7
1,347,975 + merC OKGIIK_06125 0.36 -0.5
1,347,975 + merC OKGIIK_06125 0.36 -0.7
1,347,975 + merC OKGIIK_06125 0.36 -0.0
1,347,975 + merC OKGIIK_06125 0.36 +1.1
1,347,986 + merC OKGIIK_06125 0.39 +0.3
1,347,986 + merC OKGIIK_06125 0.39 -0.0
1,347,986 + merC OKGIIK_06125 0.39 +0.6
1,347,987 - merC OKGIIK_06125 0.39 +0.1
1,347,987 - merC OKGIIK_06125 0.39 -0.1
1,347,987 - merC OKGIIK_06125 0.39 -1.8
1,347,987 - merC OKGIIK_06125 0.39 -0.7
1,347,987 - merC OKGIIK_06125 0.39 +0.3
1,348,059 + merC OKGIIK_06125 0.57 -0.5

Or see this region's nucleotide sequence