Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05680

Experiment: R2A_PIPES with Cadmium chloride 128 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_05670 and yeaD2 overlap by 4 nucleotidesyeaD2 and moxR overlap by 1 nucleotidesmoxR and OKGIIK_05685 are separated by 55 nucleotidesOKGIIK_05685 and OKGIIK_05690 overlap by 4 nucleotides OKGIIK_05670: OKGIIK_05670 - Transglutaminase, at 1,246,286 to 1,248,271 _05670 OKGIIK_05675: yeaD2 - DUF58 domain-containing protein, at 1,248,268 to 1,249,221 yeaD2 OKGIIK_05680: moxR - AAA family ATPase, at 1,249,221 to 1,250,162 moxR OKGIIK_05685: OKGIIK_05685 - 7-methyl-GTP pyrophosphatase, at 1,250,218 to 1,250,814 _05685 OKGIIK_05690: OKGIIK_05690 - Receptor protein-tyrosine kinase, at 1,250,811 to 1,251,266 _05690 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -2 -1 0 1 2at 1248.305 kb on + strandat 1248.305 kb on + strandat 1248.305 kb on + strandat 1248.305 kb on + strandat 1248.305 kb on + strandat 1248.305 kb on + strandat 1248.306 kb on - strandat 1248.306 kb on - strandat 1248.306 kb on - strandat 1248.306 kb on - strandat 1248.306 kb on - strandat 1248.306 kb on - strandat 1248.359 kb on + strandat 1248.359 kb on + strandat 1248.359 kb on + strandat 1248.359 kb on + strandat 1248.359 kb on + strandat 1248.360 kb on - strandat 1248.360 kb on - strandat 1248.488 kb on + strand, within yeaD2at 1248.560 kb on + strand, within yeaD2at 1248.561 kb on - strand, within yeaD2at 1249.003 kb on + strand, within yeaD2at 1249.004 kb on - strand, within yeaD2at 1249.037 kb on + strand, within yeaD2at 1249.037 kb on + strand, within yeaD2at 1249.037 kb on + strand, within yeaD2at 1249.038 kb on - strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.109 kb on + strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.110 kb on - strand, within yeaD2at 1249.468 kb on + strand, within moxRat 1249.468 kb on + strand, within moxRat 1249.468 kb on + strand, within moxRat 1249.468 kb on + strand, within moxRat 1249.468 kb on + strand, within moxRat 1249.468 kb on + strand, within moxRat 1249.619 kb on - strand, within moxRat 1249.888 kb on + strand, within moxRat 1249.888 kb on + strand, within moxRat 1249.888 kb on + strand, within moxRat 1249.888 kb on + strand, within moxRat 1249.889 kb on - strand, within moxRat 1249.889 kb on - strand, within moxRat 1249.889 kb on - strand, within moxRat 1249.889 kb on - strand, within moxRat 1250.208 kb on + strandat 1250.208 kb on + strandat 1250.208 kb on + strandat 1250.208 kb on + strandat 1250.208 kb on + strandat 1250.209 kb on - strandat 1250.209 kb on - strandat 1250.209 kb on - strandat 1250.209 kb on - strandat 1250.384 kb on + strand, within OKGIIK_05685at 1250.384 kb on + strand, within OKGIIK_05685at 1250.384 kb on + strand, within OKGIIK_05685at 1250.384 kb on + strand, within OKGIIK_05685at 1250.384 kb on + strand, within OKGIIK_05685at 1250.384 kb on + strand, within OKGIIK_05685at 1250.385 kb on - strand, within OKGIIK_05685at 1250.385 kb on - strand, within OKGIIK_05685at 1250.618 kb on + strand, within OKGIIK_05685at 1250.834 kb on + strandat 1250.834 kb on + strandat 1250.835 kb on - strandat 1250.835 kb on - strandat 1250.835 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
remove
1,248,305 + -1.6
1,248,305 + -1.3
1,248,305 + -1.0
1,248,305 + -0.4
1,248,305 + +1.0
1,248,305 + +0.3
1,248,306 - -0.8
1,248,306 - -0.6
1,248,306 - +0.2
1,248,306 - -0.8
1,248,306 - +0.4
1,248,306 - +1.0
1,248,359 + +1.0
1,248,359 + -1.5
1,248,359 + +0.3
1,248,359 + +2.1
1,248,359 + +1.0
1,248,360 - +0.0
1,248,360 - -0.4
1,248,488 + yeaD2 OKGIIK_05675 0.23 -1.4
1,248,560 + yeaD2 OKGIIK_05675 0.31 -0.5
1,248,561 - yeaD2 OKGIIK_05675 0.31 +1.2
1,249,003 + yeaD2 OKGIIK_05675 0.77 -2.0
1,249,004 - yeaD2 OKGIIK_05675 0.77 +0.4
1,249,037 + yeaD2 OKGIIK_05675 0.81 +0.8
1,249,037 + yeaD2 OKGIIK_05675 0.81 +0.6
1,249,037 + yeaD2 OKGIIK_05675 0.81 -1.7
1,249,038 - yeaD2 OKGIIK_05675 0.81 -0.5
1,249,109 + yeaD2 OKGIIK_05675 0.88 -0.6
1,249,109 + yeaD2 OKGIIK_05675 0.88 +0.0
1,249,109 + yeaD2 OKGIIK_05675 0.88 -0.2
1,249,109 + yeaD2 OKGIIK_05675 0.88 +1.0
1,249,109 + yeaD2 OKGIIK_05675 0.88 -1.0
1,249,109 + yeaD2 OKGIIK_05675 0.88 -1.4
1,249,109 + yeaD2 OKGIIK_05675 0.88 +1.6
1,249,109 + yeaD2 OKGIIK_05675 0.88 +1.1
1,249,109 + yeaD2 OKGIIK_05675 0.88 +0.7
1,249,109 + yeaD2 OKGIIK_05675 0.88 +0.5
1,249,109 + yeaD2 OKGIIK_05675 0.88 -0.8
1,249,109 + yeaD2 OKGIIK_05675 0.88 +1.3
1,249,110 - yeaD2 OKGIIK_05675 0.88 +2.3
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.1
1,249,110 - yeaD2 OKGIIK_05675 0.88 -2.4
1,249,110 - yeaD2 OKGIIK_05675 0.88 -2.1
1,249,110 - yeaD2 OKGIIK_05675 0.88 -1.4
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.2
1,249,110 - yeaD2 OKGIIK_05675 0.88 +1.5
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.2
1,249,110 - yeaD2 OKGIIK_05675 0.88 -0.1
1,249,110 - yeaD2 OKGIIK_05675 0.88 -1.0
1,249,110 - yeaD2 OKGIIK_05675 0.88 -1.0
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.5
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.4
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.0
1,249,110 - yeaD2 OKGIIK_05675 0.88 -0.7
1,249,110 - yeaD2 OKGIIK_05675 0.88 -0.3
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.3
1,249,110 - yeaD2 OKGIIK_05675 0.88 +0.5
1,249,468 + moxR OKGIIK_05680 0.26 +1.8
1,249,468 + moxR OKGIIK_05680 0.26 -0.8
1,249,468 + moxR OKGIIK_05680 0.26 +1.3
1,249,468 + moxR OKGIIK_05680 0.26 +0.3
1,249,468 + moxR OKGIIK_05680 0.26 +1.5
1,249,468 + moxR OKGIIK_05680 0.26 +2.1
1,249,619 - moxR OKGIIK_05680 0.42 -0.7
1,249,888 + moxR OKGIIK_05680 0.71 -1.4
1,249,888 + moxR OKGIIK_05680 0.71 -0.9
1,249,888 + moxR OKGIIK_05680 0.71 -0.7
1,249,888 + moxR OKGIIK_05680 0.71 -0.0
1,249,889 - moxR OKGIIK_05680 0.71 +0.7
1,249,889 - moxR OKGIIK_05680 0.71 -0.7
1,249,889 - moxR OKGIIK_05680 0.71 +1.4
1,249,889 - moxR OKGIIK_05680 0.71 +1.3
1,250,208 + +0.2
1,250,208 + -0.7
1,250,208 + -0.0
1,250,208 + -1.3
1,250,208 + -1.0
1,250,209 - -0.0
1,250,209 - +0.7
1,250,209 - -0.7
1,250,209 - -0.0
1,250,384 + OKGIIK_05685 0.28 +0.5
1,250,384 + OKGIIK_05685 0.28 -0.5
1,250,384 + OKGIIK_05685 0.28 -0.1
1,250,384 + OKGIIK_05685 0.28 +0.2
1,250,384 + OKGIIK_05685 0.28 -1.1
1,250,384 + OKGIIK_05685 0.28 -0.4
1,250,385 - OKGIIK_05685 0.28 -1.5
1,250,385 - OKGIIK_05685 0.28 -0.7
1,250,618 + OKGIIK_05685 0.67 +1.2
1,250,834 + +0.3
1,250,834 + -0.5
1,250,835 - +1.1
1,250,835 - +1.0
1,250,835 - +0.6

Or see this region's nucleotide sequence