Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04735 and pxpB overlap by 4 nucleotides pxpB and OKGIIK_04745 are separated by 7 nucleotides OKGIIK_04745 and dLH overlap by 4 nucleotides dLH and rimO are separated by 105 nucleotides
OKGIIK_04735: OKGIIK_04735 - AHS2 domain-containing protein, at 1,031,817 to 1,032,791
_04735
OKGIIK_04740: pxpB - 5-oxoprolinase subunit PxpB, at 1,032,788 to 1,033,483
pxpB
OKGIIK_04745: OKGIIK_04745 - Diadenosine tetraphosphate hydrolase, at 1,033,491 to 1,033,916
_04745
OKGIIK_04750: dLH - carboxymethylenebutenolidase, at 1,033,913 to 1,034,584
dLH
OKGIIK_04755: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,034,690 to 1,036,027
rimO
Position (kb) 1033
1034 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1032.951 kb on + strand, within pxpB at 1032.951 kb on + strand, within pxpB at 1032.951 kb on + strand, within pxpB at 1032.951 kb on + strand, within pxpB at 1032.951 kb on + strand, within pxpB at 1032.951 kb on + strand, within pxpB at 1032.952 kb on - strand, within pxpB at 1032.952 kb on - strand, within pxpB at 1033.096 kb on - strand, within pxpB at 1033.177 kb on - strand, within pxpB at 1033.177 kb on - strand, within pxpB at 1033.177 kb on - strand, within pxpB at 1033.177 kb on - strand, within pxpB at 1033.188 kb on + strand, within pxpB at 1033.188 kb on + strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.189 kb on - strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.335 kb on + strand, within pxpB at 1033.336 kb on - strand, within pxpB at 1033.336 kb on - strand, within pxpB at 1033.336 kb on - strand, within pxpB at 1033.558 kb on + strand, within OKGIIK_04745 at 1033.559 kb on - strand, within OKGIIK_04745 at 1033.559 kb on - strand, within OKGIIK_04745 at 1033.559 kb on - strand, within OKGIIK_04745 at 1033.559 kb on - strand, within OKGIIK_04745 at 1033.989 kb on + strand, within dLH at 1033.990 kb on - strand, within dLH at 1033.990 kb on - strand, within dLH at 1033.990 kb on - strand, within dLH at 1034.031 kb on + strand, within dLH at 1034.031 kb on + strand, within dLH at 1034.031 kb on + strand, within dLH at 1034.031 kb on + strand, within dLH at 1034.172 kb on + strand, within dLH at 1034.172 kb on + strand, within dLH at 1034.172 kb on + strand, within dLH at 1034.172 kb on + strand, within dLH at 1034.173 kb on - strand, within dLH at 1034.173 kb on - strand, within dLH at 1034.173 kb on - strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.175 kb on + strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.176 kb on - strand, within dLH at 1034.238 kb on + strand, within dLH at 1034.238 kb on + strand, within dLH at 1034.239 kb on - strand, within dLH at 1034.364 kb on + strand, within dLH at 1034.364 kb on + strand, within dLH at 1034.364 kb on + strand, within dLH at 1034.364 kb on + strand, within dLH at 1034.364 kb on + strand, within dLH at 1034.364 kb on + strand, within dLH at 1034.365 kb on - strand, within dLH at 1034.365 kb on - strand, within dLH at 1034.365 kb on - strand, within dLH at 1034.365 kb on - strand, within dLH at 1034.365 kb on - strand, within dLH at 1034.421 kb on + strand, within dLH at 1034.421 kb on + strand, within dLH at 1034.421 kb on + strand, within dLH at 1034.421 kb on + strand, within dLH at 1034.421 kb on + strand, within dLH at 1034.421 kb on + strand, within dLH at 1034.422 kb on - strand, within dLH at 1034.422 kb on - strand, within dLH at 1034.422 kb on - strand, within dLH at 1034.422 kb on - strand, within dLH at 1034.422 kb on - strand, within dLH at 1034.617 kb on + strand at 1034.618 kb on - strand at 1034.648 kb on + strand at 1034.648 kb on + strand at 1034.648 kb on + strand at 1034.649 kb on - strand at 1034.649 kb on - strand at 1034.650 kb on + strand at 1034.650 kb on + strand at 1034.650 kb on + strand at 1034.650 kb on + strand at 1034.651 kb on - strand at 1034.651 kb on - strand at 1034.651 kb on - strand at 1034.651 kb on - strand at 1034.651 kb on - strand at 1034.651 kb on - strand at 1034.651 kb on - strand at 1034.789 kb on + strand at 1034.789 kb on + strand at 1034.789 kb on + strand at 1034.789 kb on + strand at 1034.790 kb on - strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.807 kb on + strand at 1034.808 kb on - strand at 1034.808 kb on - strand at 1034.808 kb on - strand at 1034.808 kb on - strand at 1034.808 kb on - strand at 1034.808 kb on - strand at 1034.808 kb on - strand at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.836 kb on + strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO at 1034.837 kb on - strand, within rimO
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 1,032,951 + pxpB OKGIIK_04740 0.23 -0.2 1,032,951 + pxpB OKGIIK_04740 0.23 +0.4 1,032,951 + pxpB OKGIIK_04740 0.23 -2.3 1,032,951 + pxpB OKGIIK_04740 0.23 -0.9 1,032,951 + pxpB OKGIIK_04740 0.23 -0.7 1,032,951 + pxpB OKGIIK_04740 0.23 +0.3 1,032,952 - pxpB OKGIIK_04740 0.24 +1.6 1,032,952 - pxpB OKGIIK_04740 0.24 +0.3 1,033,096 - pxpB OKGIIK_04740 0.44 +0.3 1,033,177 - pxpB OKGIIK_04740 0.56 +0.4 1,033,177 - pxpB OKGIIK_04740 0.56 +0.7 1,033,177 - pxpB OKGIIK_04740 0.56 +1.1 1,033,177 - pxpB OKGIIK_04740 0.56 -0.3 1,033,188 + pxpB OKGIIK_04740 0.57 -0.0 1,033,188 + pxpB OKGIIK_04740 0.57 -0.4 1,033,189 - pxpB OKGIIK_04740 0.58 -1.0 1,033,189 - pxpB OKGIIK_04740 0.58 -1.0 1,033,189 - pxpB OKGIIK_04740 0.58 +0.6 1,033,189 - pxpB OKGIIK_04740 0.58 +2.1 1,033,189 - pxpB OKGIIK_04740 0.58 -0.4 1,033,189 - pxpB OKGIIK_04740 0.58 -1.1 1,033,189 - pxpB OKGIIK_04740 0.58 -0.9 1,033,189 - pxpB OKGIIK_04740 0.58 -0.3 1,033,189 - pxpB OKGIIK_04740 0.58 -2.4 1,033,189 - pxpB OKGIIK_04740 0.58 +1.1 1,033,335 + pxpB OKGIIK_04740 0.79 -0.4 1,033,335 + pxpB OKGIIK_04740 0.79 +0.4 1,033,335 + pxpB OKGIIK_04740 0.79 -0.5 1,033,335 + pxpB OKGIIK_04740 0.79 +0.7 1,033,335 + pxpB OKGIIK_04740 0.79 -0.5 1,033,335 + pxpB OKGIIK_04740 0.79 +0.3 1,033,335 + pxpB OKGIIK_04740 0.79 +0.3 1,033,335 + pxpB OKGIIK_04740 0.79 +0.4 1,033,335 + pxpB OKGIIK_04740 0.79 -1.9 1,033,336 - pxpB OKGIIK_04740 0.79 +1.1 1,033,336 - pxpB OKGIIK_04740 0.79 +0.9 1,033,336 - pxpB OKGIIK_04740 0.79 +0.8 1,033,558 + OKGIIK_04745 0.16 -0.8 1,033,559 - OKGIIK_04745 0.16 +0.3 1,033,559 - OKGIIK_04745 0.16 +1.0 1,033,559 - OKGIIK_04745 0.16 -1.2 1,033,559 - OKGIIK_04745 0.16 -0.0 1,033,989 + dLH OKGIIK_04750 0.11 +0.3 1,033,990 - dLH OKGIIK_04750 0.11 +2.4 1,033,990 - dLH OKGIIK_04750 0.11 -0.9 1,033,990 - dLH OKGIIK_04750 0.11 -2.7 1,034,031 + dLH OKGIIK_04750 0.18 -0.9 1,034,031 + dLH OKGIIK_04750 0.18 +1.5 1,034,031 + dLH OKGIIK_04750 0.18 -0.3 1,034,031 + dLH OKGIIK_04750 0.18 +0.2 1,034,172 + dLH OKGIIK_04750 0.39 -1.9 1,034,172 + dLH OKGIIK_04750 0.39 +1.7 1,034,172 + dLH OKGIIK_04750 0.39 -0.7 1,034,172 + dLH OKGIIK_04750 0.39 +2.9 1,034,173 - dLH OKGIIK_04750 0.39 -0.2 1,034,173 - dLH OKGIIK_04750 0.39 +0.2 1,034,173 - dLH OKGIIK_04750 0.39 -0.7 1,034,175 + dLH OKGIIK_04750 0.39 -0.7 1,034,175 + dLH OKGIIK_04750 0.39 -1.0 1,034,175 + dLH OKGIIK_04750 0.39 +1.3 1,034,175 + dLH OKGIIK_04750 0.39 -1.2 1,034,175 + dLH OKGIIK_04750 0.39 -0.2 1,034,175 + dLH OKGIIK_04750 0.39 -0.6 1,034,175 + dLH OKGIIK_04750 0.39 -0.5 1,034,175 + dLH OKGIIK_04750 0.39 -0.0 1,034,175 + dLH OKGIIK_04750 0.39 +1.7 1,034,175 + dLH OKGIIK_04750 0.39 +0.1 1,034,175 + dLH OKGIIK_04750 0.39 -1.5 1,034,175 + dLH OKGIIK_04750 0.39 -0.3 1,034,175 + dLH OKGIIK_04750 0.39 +0.3 1,034,175 + dLH OKGIIK_04750 0.39 +0.2 1,034,175 + dLH OKGIIK_04750 0.39 -0.7 1,034,176 - dLH OKGIIK_04750 0.39 -1.0 1,034,176 - dLH OKGIIK_04750 0.39 -1.3 1,034,176 - dLH OKGIIK_04750 0.39 -0.0 1,034,176 - dLH OKGIIK_04750 0.39 -0.7 1,034,176 - dLH OKGIIK_04750 0.39 -1.3 1,034,176 - dLH OKGIIK_04750 0.39 -0.8 1,034,176 - dLH OKGIIK_04750 0.39 -0.2 1,034,238 + dLH OKGIIK_04750 0.48 +0.6 1,034,238 + dLH OKGIIK_04750 0.48 +0.0 1,034,239 - dLH OKGIIK_04750 0.49 +0.3 1,034,364 + dLH OKGIIK_04750 0.67 -0.9 1,034,364 + dLH OKGIIK_04750 0.67 +0.2 1,034,364 + dLH OKGIIK_04750 0.67 +1.3 1,034,364 + dLH OKGIIK_04750 0.67 -0.0 1,034,364 + dLH OKGIIK_04750 0.67 +0.5 1,034,364 + dLH OKGIIK_04750 0.67 -1.2 1,034,365 - dLH OKGIIK_04750 0.67 -0.0 1,034,365 - dLH OKGIIK_04750 0.67 -1.5 1,034,365 - dLH OKGIIK_04750 0.67 +0.3 1,034,365 - dLH OKGIIK_04750 0.67 -1.4 1,034,365 - dLH OKGIIK_04750 0.67 +0.3 1,034,421 + dLH OKGIIK_04750 0.76 -0.5 1,034,421 + dLH OKGIIK_04750 0.76 +2.5 1,034,421 + dLH OKGIIK_04750 0.76 +0.1 1,034,421 + dLH OKGIIK_04750 0.76 +0.0 1,034,421 + dLH OKGIIK_04750 0.76 -0.1 1,034,421 + dLH OKGIIK_04750 0.76 -1.1 1,034,422 - dLH OKGIIK_04750 0.76 -0.0 1,034,422 - dLH OKGIIK_04750 0.76 +0.7 1,034,422 - dLH OKGIIK_04750 0.76 -0.7 1,034,422 - dLH OKGIIK_04750 0.76 -0.4 1,034,422 - dLH OKGIIK_04750 0.76 +1.7 1,034,617 + -1.2 1,034,618 - -0.3 1,034,648 + +0.3 1,034,648 + -0.6 1,034,648 + +0.5 1,034,649 - +2.6 1,034,649 - -1.5 1,034,650 + -0.7 1,034,650 + -0.9 1,034,650 + +0.1 1,034,650 + +1.1 1,034,651 - -0.0 1,034,651 - +0.5 1,034,651 - -0.3 1,034,651 - +0.4 1,034,651 - -0.4 1,034,651 - -0.3 1,034,651 - -0.5 1,034,789 + -0.7 1,034,789 + -0.7 1,034,789 + +0.5 1,034,789 + +0.2 1,034,790 - +1.0 1,034,807 + -2.5 1,034,807 + -0.0 1,034,807 + +0.3 1,034,807 + +1.2 1,034,807 + -0.0 1,034,807 + +0.9 1,034,807 + -1.9 1,034,807 + -0.0 1,034,807 + -0.8 1,034,807 + +1.9 1,034,808 - +0.3 1,034,808 - +0.2 1,034,808 - -0.8 1,034,808 - +0.9 1,034,808 - -0.4 1,034,808 - +0.7 1,034,808 - -0.3 1,034,836 + rimO OKGIIK_04755 0.11 -0.3 1,034,836 + rimO OKGIIK_04755 0.11 +0.4 1,034,836 + rimO OKGIIK_04755 0.11 -1.1 1,034,836 + rimO OKGIIK_04755 0.11 +0.1 1,034,836 + rimO OKGIIK_04755 0.11 +2.8 1,034,836 + rimO OKGIIK_04755 0.11 -0.2 1,034,836 + rimO OKGIIK_04755 0.11 -1.3 1,034,836 + rimO OKGIIK_04755 0.11 -0.3 1,034,837 - rimO OKGIIK_04755 0.11 -1.5 1,034,837 - rimO OKGIIK_04755 0.11 -0.3 1,034,837 - rimO OKGIIK_04755 0.11 -0.7 1,034,837 - rimO OKGIIK_04755 0.11 -0.0 1,034,837 - rimO OKGIIK_04755 0.11 -0.9 1,034,837 - rimO OKGIIK_04755 0.11 -1.0 1,034,837 - rimO OKGIIK_04755 0.11 -1.1 1,034,837 - rimO OKGIIK_04755 0.11 +1.8 1,034,837 - rimO OKGIIK_04755 0.11 +0.7 1,034,837 - rimO OKGIIK_04755 0.11 +0.4 1,034,837 - rimO OKGIIK_04755 0.11 -0.7 1,034,837 - rimO OKGIIK_04755 0.11 +0.3 1,034,837 - rimO OKGIIK_04755 0.11 -1.7
Or see this region's nucleotide sequence