Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03675 and yfdV are separated by 125 nucleotides yfdV and OKGIIK_03685 are separated by 74 nucleotides OKGIIK_03685 and OKGIIK_03690 are separated by 36 nucleotides
OKGIIK_03675: OKGIIK_03675 - Aminoglycoside phosphotransferase, at 810,050 to 811,186
_03675
OKGIIK_03680: yfdV - transporter, at 811,312 to 812,205
yfdV
OKGIIK_03685: OKGIIK_03685 - Histidine kinase, at 812,280 to 812,867
_03685
OKGIIK_03690: OKGIIK_03690 - RNA-binding protein, at 812,904 to 813,302
_03690
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 810.494 kb on + strand, within OKGIIK_03675 at 810.495 kb on - strand, within OKGIIK_03675 at 810.588 kb on + strand, within OKGIIK_03675 at 810.588 kb on + strand, within OKGIIK_03675 at 810.589 kb on - strand, within OKGIIK_03675 at 810.589 kb on - strand, within OKGIIK_03675 at 810.763 kb on + strand, within OKGIIK_03675 at 810.764 kb on - strand, within OKGIIK_03675 at 810.802 kb on - strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.837 kb on + strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 810.838 kb on - strand, within OKGIIK_03675 at 811.221 kb on + strand at 811.222 kb on - strand at 811.230 kb on + strand at 811.230 kb on + strand at 811.230 kb on + strand at 811.274 kb on - strand at 811.274 kb on - strand at 811.274 kb on - strand at 811.274 kb on - strand at 811.431 kb on - strand, within yfdV at 811.431 kb on - strand, within yfdV at 811.602 kb on + strand, within yfdV at 811.602 kb on + strand, within yfdV at 811.602 kb on + strand, within yfdV at 811.603 kb on - strand, within yfdV at 811.603 kb on - strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.609 kb on + strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.610 kb on - strand, within yfdV at 811.732 kb on + strand, within yfdV at 811.732 kb on + strand, within yfdV at 811.733 kb on - strand, within yfdV at 811.733 kb on - strand, within yfdV at 811.733 kb on - strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.039 kb on + strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.040 kb on - strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.107 kb on + strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.108 kb on - strand, within yfdV at 812.204 kb on - strand at 812.242 kb on + strand at 812.242 kb on + strand at 812.242 kb on + strand at 812.243 kb on - strand at 812.243 kb on - strand at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.634 kb on + strand, within OKGIIK_03685 at 812.893 kb on + strand at 812.893 kb on + strand at 812.894 kb on - strand at 813.165 kb on + strand, within OKGIIK_03690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 810,494 + OKGIIK_03675 0.39 -1.5 810,495 - OKGIIK_03675 0.39 -1.7 810,588 + OKGIIK_03675 0.47 +0.7 810,588 + OKGIIK_03675 0.47 +1.2 810,589 - OKGIIK_03675 0.47 -0.1 810,589 - OKGIIK_03675 0.47 +0.3 810,763 + OKGIIK_03675 0.63 +0.2 810,764 - OKGIIK_03675 0.63 -1.8 810,802 - OKGIIK_03675 0.66 +0.5 810,837 + OKGIIK_03675 0.69 +0.6 810,837 + OKGIIK_03675 0.69 -2.0 810,837 + OKGIIK_03675 0.69 +1.4 810,837 + OKGIIK_03675 0.69 -0.1 810,837 + OKGIIK_03675 0.69 +0.2 810,837 + OKGIIK_03675 0.69 -0.0 810,837 + OKGIIK_03675 0.69 -0.9 810,837 + OKGIIK_03675 0.69 +0.9 810,837 + OKGIIK_03675 0.69 +1.0 810,837 + OKGIIK_03675 0.69 -0.3 810,837 + OKGIIK_03675 0.69 -1.7 810,837 + OKGIIK_03675 0.69 -0.3 810,837 + OKGIIK_03675 0.69 +0.2 810,838 - OKGIIK_03675 0.69 +1.2 810,838 - OKGIIK_03675 0.69 +0.6 810,838 - OKGIIK_03675 0.69 -0.4 810,838 - OKGIIK_03675 0.69 +0.2 810,838 - OKGIIK_03675 0.69 +0.2 810,838 - OKGIIK_03675 0.69 +0.2 810,838 - OKGIIK_03675 0.69 -0.7 810,838 - OKGIIK_03675 0.69 -2.8 811,221 + +0.8 811,222 - +1.2 811,230 + +0.2 811,230 + +1.1 811,230 + -1.8 811,274 - -0.4 811,274 - -0.7 811,274 - -0.1 811,274 - +2.2 811,431 - yfdV OKGIIK_03680 0.13 -1.4 811,431 - yfdV OKGIIK_03680 0.13 +1.4 811,602 + yfdV OKGIIK_03680 0.32 -0.1 811,602 + yfdV OKGIIK_03680 0.32 +1.0 811,602 + yfdV OKGIIK_03680 0.32 +1.4 811,603 - yfdV OKGIIK_03680 0.33 +1.2 811,603 - yfdV OKGIIK_03680 0.33 -0.9 811,609 + yfdV OKGIIK_03680 0.33 -1.3 811,609 + yfdV OKGIIK_03680 0.33 +0.2 811,609 + yfdV OKGIIK_03680 0.33 +2.2 811,609 + yfdV OKGIIK_03680 0.33 +0.4 811,609 + yfdV OKGIIK_03680 0.33 +1.2 811,609 + yfdV OKGIIK_03680 0.33 -1.0 811,609 + yfdV OKGIIK_03680 0.33 -1.4 811,609 + yfdV OKGIIK_03680 0.33 +0.6 811,609 + yfdV OKGIIK_03680 0.33 -0.3 811,609 + yfdV OKGIIK_03680 0.33 +0.4 811,609 + yfdV OKGIIK_03680 0.33 -1.3 811,609 + yfdV OKGIIK_03680 0.33 +0.7 811,609 + yfdV OKGIIK_03680 0.33 +1.9 811,610 - yfdV OKGIIK_03680 0.33 +1.5 811,610 - yfdV OKGIIK_03680 0.33 -0.6 811,610 - yfdV OKGIIK_03680 0.33 -0.3 811,610 - yfdV OKGIIK_03680 0.33 +0.3 811,610 - yfdV OKGIIK_03680 0.33 -0.5 811,610 - yfdV OKGIIK_03680 0.33 -0.6 811,610 - yfdV OKGIIK_03680 0.33 +0.0 811,610 - yfdV OKGIIK_03680 0.33 +0.9 811,610 - yfdV OKGIIK_03680 0.33 +1.2 811,610 - yfdV OKGIIK_03680 0.33 +1.5 811,610 - yfdV OKGIIK_03680 0.33 +0.2 811,610 - yfdV OKGIIK_03680 0.33 -1.1 811,732 + yfdV OKGIIK_03680 0.47 -0.4 811,732 + yfdV OKGIIK_03680 0.47 -3.0 811,733 - yfdV OKGIIK_03680 0.47 -0.4 811,733 - yfdV OKGIIK_03680 0.47 +0.2 811,733 - yfdV OKGIIK_03680 0.47 -0.5 812,039 + yfdV OKGIIK_03680 0.81 +1.5 812,039 + yfdV OKGIIK_03680 0.81 -0.6 812,039 + yfdV OKGIIK_03680 0.81 -0.5 812,040 - yfdV OKGIIK_03680 0.81 -0.6 812,040 - yfdV OKGIIK_03680 0.81 +0.9 812,040 - yfdV OKGIIK_03680 0.81 +0.6 812,040 - yfdV OKGIIK_03680 0.81 -0.7 812,040 - yfdV OKGIIK_03680 0.81 -0.7 812,040 - yfdV OKGIIK_03680 0.81 -1.5 812,107 + yfdV OKGIIK_03680 0.89 -1.1 812,107 + yfdV OKGIIK_03680 0.89 -0.4 812,107 + yfdV OKGIIK_03680 0.89 +1.1 812,107 + yfdV OKGIIK_03680 0.89 +0.1 812,107 + yfdV OKGIIK_03680 0.89 -2.1 812,108 - yfdV OKGIIK_03680 0.89 +1.2 812,108 - yfdV OKGIIK_03680 0.89 +0.7 812,108 - yfdV OKGIIK_03680 0.89 -1.6 812,108 - yfdV OKGIIK_03680 0.89 -0.2 812,108 - yfdV OKGIIK_03680 0.89 +0.3 812,108 - yfdV OKGIIK_03680 0.89 -0.8 812,204 - +0.1 812,242 + -0.6 812,242 + -0.6 812,242 + -1.6 812,243 - -1.0 812,243 - +1.4 812,634 + OKGIIK_03685 0.60 +0.7 812,634 + OKGIIK_03685 0.60 +0.2 812,634 + OKGIIK_03685 0.60 -1.3 812,893 + -0.2 812,893 + +1.3 812,894 - -1.0 813,165 + OKGIIK_03690 0.65 +0.4
Or see this region's nucleotide sequence