Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03325 and citB are separated by 105 nucleotides citB and OKGIIK_03335 are separated by 233 nucleotides
OKGIIK_03325: OKGIIK_03325 - two-component sensor histidine kinase, at 745,634 to 746,857
_03325
OKGIIK_03330: citB - DNA-binding response regulator, at 746,963 to 747,604
citB
OKGIIK_03335: OKGIIK_03335 - Polyketide cyclase, at 747,838 to 749,190
_03335
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 746.051 kb on + strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.052 kb on - strand, within OKGIIK_03325 at 746.052 kb on - strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.570 kb on - strand, within OKGIIK_03325 at 746.616 kb on - strand, within OKGIIK_03325 at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 747.263 kb on + strand, within citB at 747.464 kb on + strand, within citB at 747.465 kb on - strand, within citB at 747.508 kb on + strand, within citB at 747.508 kb on + strand, within citB at 747.509 kb on - strand, within citB at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.807 kb on - strand at 747.807 kb on - strand at 747.807 kb on - strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.814 kb on - strand at 747.970 kb on + strand at 747.970 kb on + strand at 747.971 kb on - strand at 747.971 kb on - strand at 747.988 kb on + strand, within OKGIIK_03335 at 747.988 kb on + strand, within OKGIIK_03335 at 747.988 kb on + strand, within OKGIIK_03335 at 747.988 kb on + strand, within OKGIIK_03335 at 747.988 kb on + strand, within OKGIIK_03335 at 748.006 kb on + strand, within OKGIIK_03335 at 748.006 kb on + strand, within OKGIIK_03335 at 748.007 kb on - strand, within OKGIIK_03335 at 748.007 kb on - strand, within OKGIIK_03335 at 748.064 kb on - strand, within OKGIIK_03335 at 748.064 kb on - strand, within OKGIIK_03335 at 748.291 kb on + strand, within OKGIIK_03335 at 748.291 kb on + strand, within OKGIIK_03335 at 748.291 kb on + strand, within OKGIIK_03335 at 748.292 kb on - strand, within OKGIIK_03335 at 748.292 kb on - strand, within OKGIIK_03335 at 748.292 kb on - strand, within OKGIIK_03335 at 748.292 kb on - strand, within OKGIIK_03335 at 748.292 kb on - strand, within OKGIIK_03335 at 748.304 kb on - strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.339 kb on + strand, within OKGIIK_03335 at 748.340 kb on - strand, within OKGIIK_03335 at 748.340 kb on - strand, within OKGIIK_03335 at 748.340 kb on - strand, within OKGIIK_03335 at 748.340 kb on - strand, within OKGIIK_03335 at 748.340 kb on - strand, within OKGIIK_03335 at 748.340 kb on - strand, within OKGIIK_03335 at 748.424 kb on - strand, within OKGIIK_03335 at 748.424 kb on - strand, within OKGIIK_03335 at 748.424 kb on - strand, within OKGIIK_03335 at 748.424 kb on - strand, within OKGIIK_03335 at 748.441 kb on + strand, within OKGIIK_03335 at 748.441 kb on + strand, within OKGIIK_03335 at 748.441 kb on + strand, within OKGIIK_03335 at 748.441 kb on + strand, within OKGIIK_03335 at 748.441 kb on + strand, within OKGIIK_03335 at 748.441 kb on + strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335 at 748.442 kb on - strand, within OKGIIK_03335
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 746,051 + OKGIIK_03325 0.34 +0.5 746,051 + OKGIIK_03325 0.34 -0.6 746,051 + OKGIIK_03325 0.34 -0.2 746,052 - OKGIIK_03325 0.34 -1.1 746,052 - OKGIIK_03325 0.34 -0.0 746,093 + OKGIIK_03325 0.38 -2.4 746,093 + OKGIIK_03325 0.38 +1.3 746,093 + OKGIIK_03325 0.38 -0.2 746,093 + OKGIIK_03325 0.38 +0.9 746,093 + OKGIIK_03325 0.38 +1.8 746,093 + OKGIIK_03325 0.38 +1.2 746,093 + OKGIIK_03325 0.38 -0.4 746,094 - OKGIIK_03325 0.38 -0.2 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 -0.8 746,094 - OKGIIK_03325 0.38 -0.3 746,094 - OKGIIK_03325 0.38 -0.4 746,094 - OKGIIK_03325 0.38 -0.4 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 -0.8 746,094 - OKGIIK_03325 0.38 -0.2 746,570 - OKGIIK_03325 0.76 +0.5 746,616 - OKGIIK_03325 0.80 -0.3 746,855 + -0.2 746,855 + +0.9 746,855 + -1.5 746,855 + -0.2 746,855 + +0.1 746,855 + -1.3 746,856 - +1.9 746,856 - -0.2 746,856 - -0.4 746,856 - +1.4 746,856 - +0.2 746,856 - +0.3 746,936 + -0.4 746,936 + -0.4 746,936 + -0.1 746,936 + +0.8 746,936 + +0.3 746,936 + -0.3 746,936 + +0.2 746,936 + +1.2 746,936 + +0.1 746,936 + +0.8 746,936 + -0.4 746,936 + +0.5 746,936 + -0.5 746,936 + -0.5 746,936 + -0.2 746,936 + -0.8 746,936 + -0.8 746,936 + +0.8 746,936 + +0.6 746,936 + +0.1 746,937 - -2.5 746,937 - +0.3 746,937 - +0.9 746,937 - +0.9 746,937 - +0.9 746,937 - +0.9 746,937 - -0.7 746,937 - -0.2 746,937 - +1.7 746,937 - +2.3 746,937 - +0.8 746,937 - +0.2 746,937 - +1.0 746,937 - -0.1 747,263 + citB OKGIIK_03330 0.47 -0.8 747,464 + citB OKGIIK_03330 0.78 -0.8 747,465 - citB OKGIIK_03330 0.78 -1.3 747,508 + citB OKGIIK_03330 0.85 +2.2 747,508 + citB OKGIIK_03330 0.85 -0.2 747,509 - citB OKGIIK_03330 0.85 -1.5 747,710 + +0.7 747,710 + -0.2 747,710 + +0.2 747,710 + -1.3 747,710 + +0.6 747,710 + -0.5 747,710 + -2.3 747,710 + -2.5 747,710 + -2.1 747,710 + -0.0 747,710 + -0.2 747,710 + -0.4 747,710 + -0.3 747,710 + -1.2 747,710 + -0.7 747,710 + -0.7 747,710 + -0.2 747,710 + +0.8 747,710 + -2.4 747,710 + -0.7 747,710 + -0.7 747,710 + +2.0 747,710 + -0.5 747,710 + -1.0 747,710 + -0.6 747,710 + +2.4 747,710 + +1.3 747,710 + -0.4 747,710 + +0.9 747,710 + -1.0 747,710 + +0.3 747,710 + +0.3 747,710 + +0.7 747,710 + -1.2 747,711 - +0.8 747,711 - -1.8 747,711 - -0.9 747,711 - -0.8 747,711 - +1.2 747,711 - -0.8 747,711 - +0.9 747,711 - -0.8 747,711 - +1.3 747,806 + +1.2 747,806 + -0.1 747,806 + +0.1 747,806 + -1.2 747,806 + -0.5 747,806 + -0.3 747,806 + +0.2 747,806 + -1.0 747,806 + +0.2 747,806 + -0.9 747,807 - -0.2 747,807 - -0.7 747,807 - -1.7 747,813 + -0.2 747,813 + -1.2 747,813 + -0.5 747,813 + -0.6 747,814 - -2.9 747,970 + +0.8 747,970 + -1.2 747,971 - -0.4 747,971 - -2.5 747,988 + OKGIIK_03335 0.11 -1.3 747,988 + OKGIIK_03335 0.11 -0.2 747,988 + OKGIIK_03335 0.11 -2.4 747,988 + OKGIIK_03335 0.11 -1.1 747,988 + OKGIIK_03335 0.11 +0.2 748,006 + OKGIIK_03335 0.12 -1.0 748,006 + OKGIIK_03335 0.12 -0.7 748,007 - OKGIIK_03335 0.12 -0.7 748,007 - OKGIIK_03335 0.12 -1.7 748,064 - OKGIIK_03335 0.17 +2.2 748,064 - OKGIIK_03335 0.17 -0.2 748,291 + OKGIIK_03335 0.33 +0.2 748,291 + OKGIIK_03335 0.33 -0.4 748,291 + OKGIIK_03335 0.33 -0.4 748,292 - OKGIIK_03335 0.34 -0.8 748,292 - OKGIIK_03335 0.34 -1.5 748,292 - OKGIIK_03335 0.34 +0.2 748,292 - OKGIIK_03335 0.34 +0.2 748,292 - OKGIIK_03335 0.34 -1.6 748,304 - OKGIIK_03335 0.34 -1.0 748,339 + OKGIIK_03335 0.37 -0.2 748,339 + OKGIIK_03335 0.37 -1.8 748,339 + OKGIIK_03335 0.37 +0.2 748,339 + OKGIIK_03335 0.37 -0.7 748,339 + OKGIIK_03335 0.37 -2.4 748,339 + OKGIIK_03335 0.37 +0.2 748,339 + OKGIIK_03335 0.37 +0.3 748,340 - OKGIIK_03335 0.37 -1.9 748,340 - OKGIIK_03335 0.37 -0.4 748,340 - OKGIIK_03335 0.37 -0.0 748,340 - OKGIIK_03335 0.37 -0.4 748,340 - OKGIIK_03335 0.37 -0.7 748,340 - OKGIIK_03335 0.37 -1.4 748,424 - OKGIIK_03335 0.43 -0.8 748,424 - OKGIIK_03335 0.43 +0.1 748,424 - OKGIIK_03335 0.43 -0.7 748,424 - OKGIIK_03335 0.43 -0.7 748,441 + OKGIIK_03335 0.45 +0.3 748,441 + OKGIIK_03335 0.45 +0.2 748,441 + OKGIIK_03335 0.45 -1.3 748,441 + OKGIIK_03335 0.45 -1.8 748,441 + OKGIIK_03335 0.45 -0.3 748,441 + OKGIIK_03335 0.45 +0.2 748,442 - OKGIIK_03335 0.45 -1.8 748,442 - OKGIIK_03335 0.45 -0.4 748,442 - OKGIIK_03335 0.45 -1.4 748,442 - OKGIIK_03335 0.45 -0.4 748,442 - OKGIIK_03335 0.45 -0.4 748,442 - OKGIIK_03335 0.45 -2.9 748,442 - OKGIIK_03335 0.45 -1.0 748,442 - OKGIIK_03335 0.45 -0.4 748,442 - OKGIIK_03335 0.45 -0.2 748,442 - OKGIIK_03335 0.45 +0.6 748,442 - OKGIIK_03335 0.45 -1.2 748,442 - OKGIIK_03335 0.45 -1.0
Or see this region's nucleotide sequence