Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01585

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01580 and yceI are separated by 9 nucleotidesyceI and OKGIIK_01590 overlap by 1 nucleotidesOKGIIK_01590 and OKGIIK_01595 overlap by 4 nucleotides OKGIIK_01580: OKGIIK_01580 - GTP-binding protein HSR1, at 358,746 to 360,110 _01580 OKGIIK_01585: yceI - polyisoprenoid-binding protein, at 360,120 to 360,668 yceI OKGIIK_01590: OKGIIK_01590 - cytochrome B, at 360,668 to 361,246 _01590 OKGIIK_01595: OKGIIK_01595 - Polyisoprenoid-binding protein, at 361,243 to 361,818 _01595 Position (kb) 360 361Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.121 kb on + strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.122 kb on - strand, within OKGIIK_01580at 359.212 kb on + strand, within OKGIIK_01580at 359.212 kb on + strand, within OKGIIK_01580at 359.213 kb on - strand, within OKGIIK_01580at 359.213 kb on - strand, within OKGIIK_01580at 359.213 kb on - strand, within OKGIIK_01580at 359.213 kb on - strand, within OKGIIK_01580at 359.223 kb on - strand, within OKGIIK_01580at 359.293 kb on + strand, within OKGIIK_01580at 359.293 kb on + strand, within OKGIIK_01580at 359.294 kb on - strand, within OKGIIK_01580at 359.294 kb on - strand, within OKGIIK_01580at 359.542 kb on + strand, within OKGIIK_01580at 359.542 kb on + strand, within OKGIIK_01580at 359.791 kb on + strand, within OKGIIK_01580at 360.122 kb on - strandat 360.188 kb on - strand, within yceIat 360.505 kb on + strand, within yceIat 360.505 kb on + strand, within yceIat 360.506 kb on - strand, within yceIat 360.506 kb on - strand, within yceIat 360.506 kb on - strand, within yceIat 360.506 kb on - strand, within yceIat 360.506 kb on - strand, within yceIat 360.506 kb on - strand, within yceIat 360.576 kb on + strand, within yceIat 360.576 kb on + strand, within yceIat 360.576 kb on + strand, within yceIat 360.576 kb on + strand, within yceIat 360.576 kb on + strand, within yceIat 360.577 kb on - strand, within yceIat 360.577 kb on - strand, within yceIat 360.577 kb on - strand, within yceIat 360.577 kb on - strand, within yceIat 360.604 kb on + strand, within yceIat 360.604 kb on + strand, within yceIat 360.604 kb on + strand, within yceIat 360.604 kb on + strand, within yceIat 360.605 kb on - strand, within yceIat 360.605 kb on - strand, within yceIat 360.605 kb on - strand, within yceIat 360.605 kb on - strand, within yceIat 360.605 kb on - strand, within yceIat 360.605 kb on - strand, within yceIat 360.605 kb on - strand, within yceIat 360.814 kb on - strand, within OKGIIK_01590at 360.814 kb on - strand, within OKGIIK_01590at 360.814 kb on - strand, within OKGIIK_01590at 360.814 kb on - strand, within OKGIIK_01590at 360.814 kb on - strand, within OKGIIK_01590at 360.814 kb on - strand, within OKGIIK_01590at 360.814 kb on - strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.960 kb on + strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 360.961 kb on - strand, within OKGIIK_01590at 361.409 kb on + strand, within OKGIIK_01595at 361.544 kb on + strand, within OKGIIK_01595at 361.545 kb on - strand, within OKGIIK_01595at 361.545 kb on - strand, within OKGIIK_01595

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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359,121 + OKGIIK_01580 0.27 -0.0
359,121 + OKGIIK_01580 0.27 +0.2
359,121 + OKGIIK_01580 0.27 -0.5
359,121 + OKGIIK_01580 0.27 +0.5
359,121 + OKGIIK_01580 0.27 -0.9
359,121 + OKGIIK_01580 0.27 -0.6
359,121 + OKGIIK_01580 0.27 +0.7
359,121 + OKGIIK_01580 0.27 -0.9
359,121 + OKGIIK_01580 0.27 +0.2
359,121 + OKGIIK_01580 0.27 -0.9
359,121 + OKGIIK_01580 0.27 -1.7
359,122 - OKGIIK_01580 0.28 -1.0
359,122 - OKGIIK_01580 0.28 -1.7
359,122 - OKGIIK_01580 0.28 -0.7
359,122 - OKGIIK_01580 0.28 +2.6
359,122 - OKGIIK_01580 0.28 -3.1
359,122 - OKGIIK_01580 0.28 +0.5
359,122 - OKGIIK_01580 0.28 -1.6
359,122 - OKGIIK_01580 0.28 -0.7
359,122 - OKGIIK_01580 0.28 +0.7
359,122 - OKGIIK_01580 0.28 -0.7
359,122 - OKGIIK_01580 0.28 -1.8
359,212 + OKGIIK_01580 0.34 -1.6
359,212 + OKGIIK_01580 0.34 +1.4
359,213 - OKGIIK_01580 0.34 +0.5
359,213 - OKGIIK_01580 0.34 -0.3
359,213 - OKGIIK_01580 0.34 +1.1
359,213 - OKGIIK_01580 0.34 -0.3
359,223 - OKGIIK_01580 0.35 +0.7
359,293 + OKGIIK_01580 0.40 +1.3
359,293 + OKGIIK_01580 0.40 +1.0
359,294 - OKGIIK_01580 0.40 -0.2
359,294 - OKGIIK_01580 0.40 -0.7
359,542 + OKGIIK_01580 0.58 -0.2
359,542 + OKGIIK_01580 0.58 +0.5
359,791 + OKGIIK_01580 0.77 +1.4
360,122 - -0.1
360,188 - yceI OKGIIK_01585 0.12 +0.5
360,505 + yceI OKGIIK_01585 0.70 +0.7
360,505 + yceI OKGIIK_01585 0.70 +0.7
360,506 - yceI OKGIIK_01585 0.70 +0.8
360,506 - yceI OKGIIK_01585 0.70 -0.5
360,506 - yceI OKGIIK_01585 0.70 -0.1
360,506 - yceI OKGIIK_01585 0.70 -0.9
360,506 - yceI OKGIIK_01585 0.70 -0.4
360,506 - yceI OKGIIK_01585 0.70 +0.4
360,576 + yceI OKGIIK_01585 0.83 -0.7
360,576 + yceI OKGIIK_01585 0.83 +0.7
360,576 + yceI OKGIIK_01585 0.83 -0.5
360,576 + yceI OKGIIK_01585 0.83 +0.8
360,576 + yceI OKGIIK_01585 0.83 +1.1
360,577 - yceI OKGIIK_01585 0.83 +0.3
360,577 - yceI OKGIIK_01585 0.83 +1.7
360,577 - yceI OKGIIK_01585 0.83 +0.9
360,577 - yceI OKGIIK_01585 0.83 +0.8
360,604 + yceI OKGIIK_01585 0.88 +0.1
360,604 + yceI OKGIIK_01585 0.88 +0.7
360,604 + yceI OKGIIK_01585 0.88 -0.1
360,604 + yceI OKGIIK_01585 0.88 -0.4
360,605 - yceI OKGIIK_01585 0.88 -1.2
360,605 - yceI OKGIIK_01585 0.88 +1.1
360,605 - yceI OKGIIK_01585 0.88 +1.5
360,605 - yceI OKGIIK_01585 0.88 -0.2
360,605 - yceI OKGIIK_01585 0.88 -0.7
360,605 - yceI OKGIIK_01585 0.88 -2.1
360,605 - yceI OKGIIK_01585 0.88 +0.1
360,814 - OKGIIK_01590 0.25 +0.5
360,814 - OKGIIK_01590 0.25 -0.8
360,814 - OKGIIK_01590 0.25 -1.1
360,814 - OKGIIK_01590 0.25 -1.4
360,814 - OKGIIK_01590 0.25 -1.4
360,814 - OKGIIK_01590 0.25 -0.5
360,814 - OKGIIK_01590 0.25 -0.8
360,960 + OKGIIK_01590 0.50 -1.2
360,960 + OKGIIK_01590 0.50 -0.5
360,960 + OKGIIK_01590 0.50 +0.0
360,960 + OKGIIK_01590 0.50 -0.8
360,960 + OKGIIK_01590 0.50 +1.1
360,960 + OKGIIK_01590 0.50 +1.3
360,960 + OKGIIK_01590 0.50 +0.1
360,960 + OKGIIK_01590 0.50 -2.2
360,960 + OKGIIK_01590 0.50 -0.4
360,960 + OKGIIK_01590 0.50 -0.4
360,961 - OKGIIK_01590 0.51 -1.2
360,961 - OKGIIK_01590 0.51 -1.4
360,961 - OKGIIK_01590 0.51 +0.3
360,961 - OKGIIK_01590 0.51 +1.0
360,961 - OKGIIK_01590 0.51 -0.2
360,961 - OKGIIK_01590 0.51 +0.4
360,961 - OKGIIK_01590 0.51 -0.2
360,961 - OKGIIK_01590 0.51 -1.1
360,961 - OKGIIK_01590 0.51 -0.5
360,961 - OKGIIK_01590 0.51 -0.7
360,961 - OKGIIK_01590 0.51 -0.0
360,961 - OKGIIK_01590 0.51 -1.1
360,961 - OKGIIK_01590 0.51 +0.4
360,961 - OKGIIK_01590 0.51 +0.5
361,409 + OKGIIK_01595 0.29 +0.5
361,544 + OKGIIK_01595 0.52 +0.2
361,545 - OKGIIK_01595 0.52 +1.9
361,545 - OKGIIK_01595 0.52 +0.1

Or see this region's nucleotide sequence