Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01560

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01555 and OKGIIK_01560 are separated by 77 nucleotidesOKGIIK_01560 and sdaA are separated by 111 nucleotides OKGIIK_01555: OKGIIK_01555 - Site-specific DNA-methyltransferase (adenine-specific), at 353,517 to 355,526 _01555 OKGIIK_01560: OKGIIK_01560 - HTH cro/C1-type domain-containing protein, at 355,604 to 356,050 _01560 OKGIIK_01565: sdaA - L-serine ammonia-lyase, at 356,162 to 357,544 sdaA Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.626 kb on + strand, within OKGIIK_01555at 354.755 kb on - strand, within OKGIIK_01555at 354.776 kb on - strand, within OKGIIK_01555at 354.776 kb on - strand, within OKGIIK_01555at 354.787 kb on + strand, within OKGIIK_01555at 354.788 kb on - strand, within OKGIIK_01555at 354.788 kb on - strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.823 kb on + strand, within OKGIIK_01555at 354.835 kb on + strand, within OKGIIK_01555at 354.836 kb on - strand, within OKGIIK_01555at 354.836 kb on - strand, within OKGIIK_01555at 354.836 kb on - strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.904 kb on + strand, within OKGIIK_01555at 354.904 kb on + strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.970 kb on + strand, within OKGIIK_01555at 354.970 kb on + strand, within OKGIIK_01555at 354.971 kb on - strand, within OKGIIK_01555at 354.971 kb on - strand, within OKGIIK_01555at 354.971 kb on - strand, within OKGIIK_01555at 355.023 kb on + strand, within OKGIIK_01555at 355.023 kb on + strand, within OKGIIK_01555at 355.024 kb on - strand, within OKGIIK_01555at 355.024 kb on - strand, within OKGIIK_01555at 355.052 kb on + strand, within OKGIIK_01555at 355.052 kb on + strand, within OKGIIK_01555at 355.053 kb on - strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.067 kb on - strand, within OKGIIK_01555at 355.067 kb on - strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.100 kb on - strand, within OKGIIK_01555at 355.140 kb on + strand, within OKGIIK_01555at 355.140 kb on + strand, within OKGIIK_01555at 355.169 kb on - strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.285 kb on + strand, within OKGIIK_01555at 355.285 kb on + strand, within OKGIIK_01555at 355.286 kb on - strand, within OKGIIK_01555at 355.531 kb on + strandat 355.895 kb on + strand, within OKGIIK_01560at 355.895 kb on + strand, within OKGIIK_01560at 355.896 kb on - strand, within OKGIIK_01560at 355.922 kb on + strand, within OKGIIK_01560at 356.071 kb on + strandat 356.071 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.212 kb on - strandat 356.550 kb on + strand, within sdaAat 356.550 kb on + strand, within sdaAat 356.550 kb on + strand, within sdaAat 356.551 kb on - strand, within sdaAat 356.551 kb on - strand, within sdaAat 356.551 kb on - strand, within sdaAat 356.551 kb on - strand, within sdaAat 356.628 kb on + strand, within sdaAat 356.629 kb on - strand, within sdaAat 356.629 kb on - strand, within sdaAat 356.629 kb on - strand, within sdaAat 356.631 kb on + strand, within sdaAat 356.631 kb on + strand, within sdaAat 356.632 kb on - strand, within sdaAat 356.632 kb on - strand, within sdaAat 356.632 kb on - strand, within sdaAat 356.632 kb on - strand, within sdaAat 356.727 kb on + strand, within sdaAat 356.727 kb on + strand, within sdaAat 356.727 kb on + strand, within sdaAat 356.728 kb on - strand, within sdaAat 357.024 kb on + strand, within sdaAat 357.024 kb on + strand, within sdaAat 357.025 kb on - strand, within sdaAat 357.025 kb on - strand, within sdaA

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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354,613 + OKGIIK_01555 0.55 -0.9
354,613 + OKGIIK_01555 0.55 -1.8
354,613 + OKGIIK_01555 0.55 -1.1
354,613 + OKGIIK_01555 0.55 -0.9
354,613 + OKGIIK_01555 0.55 +0.4
354,613 + OKGIIK_01555 0.55 +0.0
354,613 + OKGIIK_01555 0.55 -0.7
354,613 + OKGIIK_01555 0.55 -2.0
354,613 + OKGIIK_01555 0.55 +0.4
354,613 + OKGIIK_01555 0.55 -0.8
354,614 - OKGIIK_01555 0.55 +0.1
354,614 - OKGIIK_01555 0.55 +1.2
354,614 - OKGIIK_01555 0.55 -0.8
354,614 - OKGIIK_01555 0.55 -0.5
354,614 - OKGIIK_01555 0.55 +1.8
354,614 - OKGIIK_01555 0.55 -0.9
354,614 - OKGIIK_01555 0.55 -0.1
354,614 - OKGIIK_01555 0.55 -1.5
354,614 - OKGIIK_01555 0.55 +0.9
354,614 - OKGIIK_01555 0.55 +1.0
354,614 - OKGIIK_01555 0.55 -0.7
354,626 + OKGIIK_01555 0.55 -1.2
354,755 - OKGIIK_01555 0.62 +0.1
354,776 - OKGIIK_01555 0.63 -1.6
354,776 - OKGIIK_01555 0.63 -1.6
354,787 + OKGIIK_01555 0.63 +0.3
354,788 - OKGIIK_01555 0.63 +1.1
354,788 - OKGIIK_01555 0.63 +2.4
354,796 + OKGIIK_01555 0.64 -0.2
354,796 + OKGIIK_01555 0.64 -0.7
354,796 + OKGIIK_01555 0.64 -0.8
354,796 + OKGIIK_01555 0.64 -0.2
354,797 - OKGIIK_01555 0.64 -0.7
354,797 - OKGIIK_01555 0.64 +0.3
354,797 - OKGIIK_01555 0.64 +0.3
354,797 - OKGIIK_01555 0.64 -1.1
354,797 - OKGIIK_01555 0.64 -1.2
354,797 - OKGIIK_01555 0.64 +0.8
354,823 + OKGIIK_01555 0.65 +0.6
354,835 + OKGIIK_01555 0.66 -0.5
354,836 - OKGIIK_01555 0.66 -0.4
354,836 - OKGIIK_01555 0.66 -1.2
354,836 - OKGIIK_01555 0.66 +0.1
354,847 + OKGIIK_01555 0.66 +1.1
354,847 + OKGIIK_01555 0.66 -0.3
354,847 + OKGIIK_01555 0.66 +0.1
354,847 + OKGIIK_01555 0.66 +0.1
354,847 + OKGIIK_01555 0.66 -0.2
354,847 + OKGIIK_01555 0.66 -2.1
354,848 - OKGIIK_01555 0.66 +0.6
354,848 - OKGIIK_01555 0.66 -1.4
354,848 - OKGIIK_01555 0.66 +0.7
354,848 - OKGIIK_01555 0.66 +0.9
354,848 - OKGIIK_01555 0.66 +0.3
354,904 + OKGIIK_01555 0.69 -0.1
354,904 + OKGIIK_01555 0.69 -0.2
354,905 - OKGIIK_01555 0.69 -1.2
354,905 - OKGIIK_01555 0.69 +1.1
354,905 - OKGIIK_01555 0.69 -2.9
354,905 - OKGIIK_01555 0.69 +0.0
354,970 + OKGIIK_01555 0.72 -0.4
354,970 + OKGIIK_01555 0.72 -1.5
354,971 - OKGIIK_01555 0.72 +1.6
354,971 - OKGIIK_01555 0.72 +0.8
354,971 - OKGIIK_01555 0.72 -0.1
355,023 + OKGIIK_01555 0.75 -0.9
355,023 + OKGIIK_01555 0.75 +0.1
355,024 - OKGIIK_01555 0.75 +1.0
355,024 - OKGIIK_01555 0.75 +0.9
355,052 + OKGIIK_01555 0.76 +0.1
355,052 + OKGIIK_01555 0.76 +1.1
355,053 - OKGIIK_01555 0.76 -0.5
355,066 + OKGIIK_01555 0.77 -1.4
355,066 + OKGIIK_01555 0.77 -1.3
355,066 + OKGIIK_01555 0.77 -1.4
355,066 + OKGIIK_01555 0.77 +0.1
355,067 - OKGIIK_01555 0.77 +0.7
355,067 - OKGIIK_01555 0.77 -2.8
355,091 + OKGIIK_01555 0.78 +0.3
355,091 + OKGIIK_01555 0.78 +0.0
355,091 + OKGIIK_01555 0.78 -1.5
355,091 + OKGIIK_01555 0.78 +1.7
355,091 + OKGIIK_01555 0.78 +1.4
355,091 + OKGIIK_01555 0.78 -1.4
355,091 + OKGIIK_01555 0.78 +0.5
355,091 + OKGIIK_01555 0.78 -0.7
355,092 - OKGIIK_01555 0.78 -0.7
355,092 - OKGIIK_01555 0.78 +0.9
355,092 - OKGIIK_01555 0.78 -0.2
355,092 - OKGIIK_01555 0.78 -0.5
355,100 - OKGIIK_01555 0.79 +0.7
355,140 + OKGIIK_01555 0.81 +0.0
355,140 + OKGIIK_01555 0.81 +2.6
355,169 - OKGIIK_01555 0.82 +0.5
355,201 + OKGIIK_01555 0.84 -0.2
355,201 + OKGIIK_01555 0.84 -1.3
355,201 + OKGIIK_01555 0.84 -0.2
355,201 + OKGIIK_01555 0.84 +0.2
355,201 + OKGIIK_01555 0.84 -0.4
355,201 + OKGIIK_01555 0.84 +0.5
355,201 + OKGIIK_01555 0.84 -0.5
355,201 + OKGIIK_01555 0.84 -2.8
355,202 - OKGIIK_01555 0.84 +0.4
355,202 - OKGIIK_01555 0.84 -1.6
355,202 - OKGIIK_01555 0.84 +0.1
355,202 - OKGIIK_01555 0.84 -1.7
355,202 - OKGIIK_01555 0.84 +0.5
355,202 - OKGIIK_01555 0.84 -1.6
355,285 + OKGIIK_01555 0.88 +0.5
355,285 + OKGIIK_01555 0.88 -0.7
355,286 - OKGIIK_01555 0.88 +0.1
355,531 + -0.1
355,895 + OKGIIK_01560 0.65 -2.3
355,895 + OKGIIK_01560 0.65 +0.5
355,896 - OKGIIK_01560 0.65 -1.5
355,922 + OKGIIK_01560 0.71 -1.4
356,071 + -0.2
356,071 + +0.5
356,211 + -1.0
356,211 + -0.9
356,211 + -0.5
356,211 + +0.2
356,211 + -0.2
356,212 - -1.1
356,550 + sdaA OKGIIK_01565 0.28 -1.4
356,550 + sdaA OKGIIK_01565 0.28 +2.1
356,550 + sdaA OKGIIK_01565 0.28 +0.6
356,551 - sdaA OKGIIK_01565 0.28 -1.4
356,551 - sdaA OKGIIK_01565 0.28 +0.1
356,551 - sdaA OKGIIK_01565 0.28 -0.9
356,551 - sdaA OKGIIK_01565 0.28 -1.7
356,628 + sdaA OKGIIK_01565 0.34 -0.4
356,629 - sdaA OKGIIK_01565 0.34 -1.0
356,629 - sdaA OKGIIK_01565 0.34 -1.5
356,629 - sdaA OKGIIK_01565 0.34 -0.7
356,631 + sdaA OKGIIK_01565 0.34 -0.3
356,631 + sdaA OKGIIK_01565 0.34 -0.9
356,632 - sdaA OKGIIK_01565 0.34 +0.8
356,632 - sdaA OKGIIK_01565 0.34 +0.1
356,632 - sdaA OKGIIK_01565 0.34 -0.4
356,632 - sdaA OKGIIK_01565 0.34 +0.3
356,727 + sdaA OKGIIK_01565 0.41 -0.5
356,727 + sdaA OKGIIK_01565 0.41 +1.1
356,727 + sdaA OKGIIK_01565 0.41 +0.5
356,728 - sdaA OKGIIK_01565 0.41 -0.1
357,024 + sdaA OKGIIK_01565 0.62 +1.5
357,024 + sdaA OKGIIK_01565 0.62 +1.1
357,025 - sdaA OKGIIK_01565 0.62 -0.4
357,025 - sdaA OKGIIK_01565 0.62 -0.4

Or see this region's nucleotide sequence