Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01555 and OKGIIK_01560 are separated by 77 nucleotides OKGIIK_01560 and sdaA are separated by 111 nucleotides
OKGIIK_01555: OKGIIK_01555 - Site-specific DNA-methyltransferase (adenine-specific), at 353,517 to 355,526
_01555
OKGIIK_01560: OKGIIK_01560 - HTH cro/C1-type domain-containing protein, at 355,604 to 356,050
_01560
OKGIIK_01565: sdaA - L-serine ammonia-lyase, at 356,162 to 357,544
sdaA
Position (kb)
355
356
357 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.613 kb on + strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.614 kb on - strand, within OKGIIK_01555 at 354.626 kb on + strand, within OKGIIK_01555 at 354.755 kb on - strand, within OKGIIK_01555 at 354.776 kb on - strand, within OKGIIK_01555 at 354.776 kb on - strand, within OKGIIK_01555 at 354.787 kb on + strand, within OKGIIK_01555 at 354.788 kb on - strand, within OKGIIK_01555 at 354.788 kb on - strand, within OKGIIK_01555 at 354.796 kb on + strand, within OKGIIK_01555 at 354.796 kb on + strand, within OKGIIK_01555 at 354.796 kb on + strand, within OKGIIK_01555 at 354.796 kb on + strand, within OKGIIK_01555 at 354.797 kb on - strand, within OKGIIK_01555 at 354.797 kb on - strand, within OKGIIK_01555 at 354.797 kb on - strand, within OKGIIK_01555 at 354.797 kb on - strand, within OKGIIK_01555 at 354.797 kb on - strand, within OKGIIK_01555 at 354.797 kb on - strand, within OKGIIK_01555 at 354.823 kb on + strand, within OKGIIK_01555 at 354.835 kb on + strand, within OKGIIK_01555 at 354.836 kb on - strand, within OKGIIK_01555 at 354.836 kb on - strand, within OKGIIK_01555 at 354.836 kb on - strand, within OKGIIK_01555 at 354.847 kb on + strand, within OKGIIK_01555 at 354.847 kb on + strand, within OKGIIK_01555 at 354.847 kb on + strand, within OKGIIK_01555 at 354.847 kb on + strand, within OKGIIK_01555 at 354.847 kb on + strand, within OKGIIK_01555 at 354.847 kb on + strand, within OKGIIK_01555 at 354.848 kb on - strand, within OKGIIK_01555 at 354.848 kb on - strand, within OKGIIK_01555 at 354.848 kb on - strand, within OKGIIK_01555 at 354.848 kb on - strand, within OKGIIK_01555 at 354.848 kb on - strand, within OKGIIK_01555 at 354.904 kb on + strand, within OKGIIK_01555 at 354.904 kb on + strand, within OKGIIK_01555 at 354.905 kb on - strand, within OKGIIK_01555 at 354.905 kb on - strand, within OKGIIK_01555 at 354.905 kb on - strand, within OKGIIK_01555 at 354.905 kb on - strand, within OKGIIK_01555 at 354.970 kb on + strand, within OKGIIK_01555 at 354.970 kb on + strand, within OKGIIK_01555 at 354.971 kb on - strand, within OKGIIK_01555 at 354.971 kb on - strand, within OKGIIK_01555 at 354.971 kb on - strand, within OKGIIK_01555 at 355.023 kb on + strand, within OKGIIK_01555 at 355.023 kb on + strand, within OKGIIK_01555 at 355.024 kb on - strand, within OKGIIK_01555 at 355.024 kb on - strand, within OKGIIK_01555 at 355.052 kb on + strand, within OKGIIK_01555 at 355.052 kb on + strand, within OKGIIK_01555 at 355.053 kb on - strand, within OKGIIK_01555 at 355.066 kb on + strand, within OKGIIK_01555 at 355.066 kb on + strand, within OKGIIK_01555 at 355.066 kb on + strand, within OKGIIK_01555 at 355.066 kb on + strand, within OKGIIK_01555 at 355.067 kb on - strand, within OKGIIK_01555 at 355.067 kb on - strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.091 kb on + strand, within OKGIIK_01555 at 355.092 kb on - strand, within OKGIIK_01555 at 355.092 kb on - strand, within OKGIIK_01555 at 355.092 kb on - strand, within OKGIIK_01555 at 355.092 kb on - strand, within OKGIIK_01555 at 355.100 kb on - strand, within OKGIIK_01555 at 355.140 kb on + strand, within OKGIIK_01555 at 355.140 kb on + strand, within OKGIIK_01555 at 355.169 kb on - strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.201 kb on + strand, within OKGIIK_01555 at 355.202 kb on - strand, within OKGIIK_01555 at 355.202 kb on - strand, within OKGIIK_01555 at 355.202 kb on - strand, within OKGIIK_01555 at 355.202 kb on - strand, within OKGIIK_01555 at 355.202 kb on - strand, within OKGIIK_01555 at 355.202 kb on - strand, within OKGIIK_01555 at 355.285 kb on + strand, within OKGIIK_01555 at 355.285 kb on + strand, within OKGIIK_01555 at 355.286 kb on - strand, within OKGIIK_01555 at 355.531 kb on + strand at 355.895 kb on + strand, within OKGIIK_01560 at 355.895 kb on + strand, within OKGIIK_01560 at 355.896 kb on - strand, within OKGIIK_01560 at 355.922 kb on + strand, within OKGIIK_01560 at 356.071 kb on + strand at 356.071 kb on + strand at 356.211 kb on + strand at 356.211 kb on + strand at 356.211 kb on + strand at 356.211 kb on + strand at 356.211 kb on + strand at 356.212 kb on - strand at 356.550 kb on + strand, within sdaA at 356.550 kb on + strand, within sdaA at 356.550 kb on + strand, within sdaA at 356.551 kb on - strand, within sdaA at 356.551 kb on - strand, within sdaA at 356.551 kb on - strand, within sdaA at 356.551 kb on - strand, within sdaA at 356.628 kb on + strand, within sdaA at 356.629 kb on - strand, within sdaA at 356.629 kb on - strand, within sdaA at 356.629 kb on - strand, within sdaA at 356.631 kb on + strand, within sdaA at 356.631 kb on + strand, within sdaA at 356.632 kb on - strand, within sdaA at 356.632 kb on - strand, within sdaA at 356.632 kb on - strand, within sdaA at 356.632 kb on - strand, within sdaA at 356.727 kb on + strand, within sdaA at 356.727 kb on + strand, within sdaA at 356.727 kb on + strand, within sdaA at 356.728 kb on - strand, within sdaA at 357.024 kb on + strand, within sdaA at 357.024 kb on + strand, within sdaA at 357.025 kb on - strand, within sdaA at 357.025 kb on - strand, within sdaA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 354,613 + OKGIIK_01555 0.55 -0.9 354,613 + OKGIIK_01555 0.55 -1.8 354,613 + OKGIIK_01555 0.55 -1.1 354,613 + OKGIIK_01555 0.55 -0.9 354,613 + OKGIIK_01555 0.55 +0.4 354,613 + OKGIIK_01555 0.55 +0.0 354,613 + OKGIIK_01555 0.55 -0.7 354,613 + OKGIIK_01555 0.55 -2.0 354,613 + OKGIIK_01555 0.55 +0.4 354,613 + OKGIIK_01555 0.55 -0.8 354,614 - OKGIIK_01555 0.55 +0.1 354,614 - OKGIIK_01555 0.55 +1.2 354,614 - OKGIIK_01555 0.55 -0.8 354,614 - OKGIIK_01555 0.55 -0.5 354,614 - OKGIIK_01555 0.55 +1.8 354,614 - OKGIIK_01555 0.55 -0.9 354,614 - OKGIIK_01555 0.55 -0.1 354,614 - OKGIIK_01555 0.55 -1.5 354,614 - OKGIIK_01555 0.55 +0.9 354,614 - OKGIIK_01555 0.55 +1.0 354,614 - OKGIIK_01555 0.55 -0.7 354,626 + OKGIIK_01555 0.55 -1.2 354,755 - OKGIIK_01555 0.62 +0.1 354,776 - OKGIIK_01555 0.63 -1.6 354,776 - OKGIIK_01555 0.63 -1.6 354,787 + OKGIIK_01555 0.63 +0.3 354,788 - OKGIIK_01555 0.63 +1.1 354,788 - OKGIIK_01555 0.63 +2.4 354,796 + OKGIIK_01555 0.64 -0.2 354,796 + OKGIIK_01555 0.64 -0.7 354,796 + OKGIIK_01555 0.64 -0.8 354,796 + OKGIIK_01555 0.64 -0.2 354,797 - OKGIIK_01555 0.64 -0.7 354,797 - OKGIIK_01555 0.64 +0.3 354,797 - OKGIIK_01555 0.64 +0.3 354,797 - OKGIIK_01555 0.64 -1.1 354,797 - OKGIIK_01555 0.64 -1.2 354,797 - OKGIIK_01555 0.64 +0.8 354,823 + OKGIIK_01555 0.65 +0.6 354,835 + OKGIIK_01555 0.66 -0.5 354,836 - OKGIIK_01555 0.66 -0.4 354,836 - OKGIIK_01555 0.66 -1.2 354,836 - OKGIIK_01555 0.66 +0.1 354,847 + OKGIIK_01555 0.66 +1.1 354,847 + OKGIIK_01555 0.66 -0.3 354,847 + OKGIIK_01555 0.66 +0.1 354,847 + OKGIIK_01555 0.66 +0.1 354,847 + OKGIIK_01555 0.66 -0.2 354,847 + OKGIIK_01555 0.66 -2.1 354,848 - OKGIIK_01555 0.66 +0.6 354,848 - OKGIIK_01555 0.66 -1.4 354,848 - OKGIIK_01555 0.66 +0.7 354,848 - OKGIIK_01555 0.66 +0.9 354,848 - OKGIIK_01555 0.66 +0.3 354,904 + OKGIIK_01555 0.69 -0.1 354,904 + OKGIIK_01555 0.69 -0.2 354,905 - OKGIIK_01555 0.69 -1.2 354,905 - OKGIIK_01555 0.69 +1.1 354,905 - OKGIIK_01555 0.69 -2.9 354,905 - OKGIIK_01555 0.69 +0.0 354,970 + OKGIIK_01555 0.72 -0.4 354,970 + OKGIIK_01555 0.72 -1.5 354,971 - OKGIIK_01555 0.72 +1.6 354,971 - OKGIIK_01555 0.72 +0.8 354,971 - OKGIIK_01555 0.72 -0.1 355,023 + OKGIIK_01555 0.75 -0.9 355,023 + OKGIIK_01555 0.75 +0.1 355,024 - OKGIIK_01555 0.75 +1.0 355,024 - OKGIIK_01555 0.75 +0.9 355,052 + OKGIIK_01555 0.76 +0.1 355,052 + OKGIIK_01555 0.76 +1.1 355,053 - OKGIIK_01555 0.76 -0.5 355,066 + OKGIIK_01555 0.77 -1.4 355,066 + OKGIIK_01555 0.77 -1.3 355,066 + OKGIIK_01555 0.77 -1.4 355,066 + OKGIIK_01555 0.77 +0.1 355,067 - OKGIIK_01555 0.77 +0.7 355,067 - OKGIIK_01555 0.77 -2.8 355,091 + OKGIIK_01555 0.78 +0.3 355,091 + OKGIIK_01555 0.78 +0.0 355,091 + OKGIIK_01555 0.78 -1.5 355,091 + OKGIIK_01555 0.78 +1.7 355,091 + OKGIIK_01555 0.78 +1.4 355,091 + OKGIIK_01555 0.78 -1.4 355,091 + OKGIIK_01555 0.78 +0.5 355,091 + OKGIIK_01555 0.78 -0.7 355,092 - OKGIIK_01555 0.78 -0.7 355,092 - OKGIIK_01555 0.78 +0.9 355,092 - OKGIIK_01555 0.78 -0.2 355,092 - OKGIIK_01555 0.78 -0.5 355,100 - OKGIIK_01555 0.79 +0.7 355,140 + OKGIIK_01555 0.81 +0.0 355,140 + OKGIIK_01555 0.81 +2.6 355,169 - OKGIIK_01555 0.82 +0.5 355,201 + OKGIIK_01555 0.84 -0.2 355,201 + OKGIIK_01555 0.84 -1.3 355,201 + OKGIIK_01555 0.84 -0.2 355,201 + OKGIIK_01555 0.84 +0.2 355,201 + OKGIIK_01555 0.84 -0.4 355,201 + OKGIIK_01555 0.84 +0.5 355,201 + OKGIIK_01555 0.84 -0.5 355,201 + OKGIIK_01555 0.84 -2.8 355,202 - OKGIIK_01555 0.84 +0.4 355,202 - OKGIIK_01555 0.84 -1.6 355,202 - OKGIIK_01555 0.84 +0.1 355,202 - OKGIIK_01555 0.84 -1.7 355,202 - OKGIIK_01555 0.84 +0.5 355,202 - OKGIIK_01555 0.84 -1.6 355,285 + OKGIIK_01555 0.88 +0.5 355,285 + OKGIIK_01555 0.88 -0.7 355,286 - OKGIIK_01555 0.88 +0.1 355,531 + -0.1 355,895 + OKGIIK_01560 0.65 -2.3 355,895 + OKGIIK_01560 0.65 +0.5 355,896 - OKGIIK_01560 0.65 -1.5 355,922 + OKGIIK_01560 0.71 -1.4 356,071 + -0.2 356,071 + +0.5 356,211 + -1.0 356,211 + -0.9 356,211 + -0.5 356,211 + +0.2 356,211 + -0.2 356,212 - -1.1 356,550 + sdaA OKGIIK_01565 0.28 -1.4 356,550 + sdaA OKGIIK_01565 0.28 +2.1 356,550 + sdaA OKGIIK_01565 0.28 +0.6 356,551 - sdaA OKGIIK_01565 0.28 -1.4 356,551 - sdaA OKGIIK_01565 0.28 +0.1 356,551 - sdaA OKGIIK_01565 0.28 -0.9 356,551 - sdaA OKGIIK_01565 0.28 -1.7 356,628 + sdaA OKGIIK_01565 0.34 -0.4 356,629 - sdaA OKGIIK_01565 0.34 -1.0 356,629 - sdaA OKGIIK_01565 0.34 -1.5 356,629 - sdaA OKGIIK_01565 0.34 -0.7 356,631 + sdaA OKGIIK_01565 0.34 -0.3 356,631 + sdaA OKGIIK_01565 0.34 -0.9 356,632 - sdaA OKGIIK_01565 0.34 +0.8 356,632 - sdaA OKGIIK_01565 0.34 +0.1 356,632 - sdaA OKGIIK_01565 0.34 -0.4 356,632 - sdaA OKGIIK_01565 0.34 +0.3 356,727 + sdaA OKGIIK_01565 0.41 -0.5 356,727 + sdaA OKGIIK_01565 0.41 +1.1 356,727 + sdaA OKGIIK_01565 0.41 +0.5 356,728 - sdaA OKGIIK_01565 0.41 -0.1 357,024 + sdaA OKGIIK_01565 0.62 +1.5 357,024 + sdaA OKGIIK_01565 0.62 +1.1 357,025 - sdaA OKGIIK_01565 0.62 -0.4 357,025 - sdaA OKGIIK_01565 0.62 -0.4
Or see this region's nucleotide sequence