Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01190 and OKGIIK_01195 are separated by 284 nucleotides OKGIIK_01195 and OKGIIK_01200 overlap by 4 nucleotides
OKGIIK_01190: OKGIIK_01190 - Transport permease protein, at 256,746 to 257,540
_01190
OKGIIK_01195: OKGIIK_01195 - ABC transporter, ATP-binding protein, at 257,825 to 258,763
_01195
OKGIIK_01200: OKGIIK_01200 - FkbM family methyltransferase, at 258,760 to 260,784
_01200
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.888 kb on - strand, within OKGIIK_01190 at 256.888 kb on - strand, within OKGIIK_01190 at 256.951 kb on - strand, within OKGIIK_01190 at 256.951 kb on - strand, within OKGIIK_01190 at 257.085 kb on - strand, within OKGIIK_01190 at 257.248 kb on + strand, within OKGIIK_01190 at 257.328 kb on + strand, within OKGIIK_01190 at 257.589 kb on - strand at 257.802 kb on + strand at 257.802 kb on + strand at 257.951 kb on + strand, within OKGIIK_01195 at 257.975 kb on + strand, within OKGIIK_01195 at 258.075 kb on - strand, within OKGIIK_01195 at 258.235 kb on + strand, within OKGIIK_01195 at 258.244 kb on - strand, within OKGIIK_01195 at 258.245 kb on + strand, within OKGIIK_01195 at 258.246 kb on - strand, within OKGIIK_01195 at 258.246 kb on - strand, within OKGIIK_01195 at 258.275 kb on - strand, within OKGIIK_01195 at 258.278 kb on - strand, within OKGIIK_01195 at 258.543 kb on + strand, within OKGIIK_01195 at 258.606 kb on - strand, within OKGIIK_01195 at 258.652 kb on + strand, within OKGIIK_01195 at 258.657 kb on - strand, within OKGIIK_01195 at 258.657 kb on - strand, within OKGIIK_01195 at 258.712 kb on - strand at 258.769 kb on - strand at 258.769 kb on - strand at 258.776 kb on - strand at 258.839 kb on - strand at 258.839 kb on - strand at 259.000 kb on - strand, within OKGIIK_01200 at 259.248 kb on - strand, within OKGIIK_01200 at 259.273 kb on - strand, within OKGIIK_01200 at 259.273 kb on - strand, within OKGIIK_01200 at 259.289 kb on - strand, within OKGIIK_01200 at 259.289 kb on - strand, within OKGIIK_01200 at 259.289 kb on - strand, within OKGIIK_01200 at 259.289 kb on - strand, within OKGIIK_01200 at 259.289 kb on - strand, within OKGIIK_01200 at 259.291 kb on - strand, within OKGIIK_01200 at 259.291 kb on - strand, within OKGIIK_01200 at 259.291 kb on - strand, within OKGIIK_01200 at 259.337 kb on - strand, within OKGIIK_01200 at 259.337 kb on - strand, within OKGIIK_01200 at 259.356 kb on - strand, within OKGIIK_01200 at 259.361 kb on - strand, within OKGIIK_01200 at 259.365 kb on - strand, within OKGIIK_01200 at 259.542 kb on - strand, within OKGIIK_01200 at 259.542 kb on - strand, within OKGIIK_01200 at 259.559 kb on - strand, within OKGIIK_01200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 256,888 - OKGIIK_01190 0.18 -1.1 256,888 - OKGIIK_01190 0.18 +0.1 256,951 - OKGIIK_01190 0.26 -0.3 256,951 - OKGIIK_01190 0.26 +0.1 257,085 - OKGIIK_01190 0.43 -1.1 257,248 + OKGIIK_01190 0.63 +0.6 257,328 + OKGIIK_01190 0.73 -1.1 257,589 - -0.8 257,802 + +1.3 257,802 + -0.3 257,951 + OKGIIK_01195 0.13 -1.6 257,975 + OKGIIK_01195 0.16 +0.7 258,075 - OKGIIK_01195 0.27 -1.1 258,235 + OKGIIK_01195 0.44 -1.5 258,244 - OKGIIK_01195 0.45 +0.3 258,245 + OKGIIK_01195 0.45 +0.1 258,246 - OKGIIK_01195 0.45 -0.3 258,246 - OKGIIK_01195 0.45 -1.1 258,275 - OKGIIK_01195 0.48 -0.6 258,278 - OKGIIK_01195 0.48 +0.1 258,543 + OKGIIK_01195 0.76 -0.3 258,606 - OKGIIK_01195 0.83 +0.3 258,652 + OKGIIK_01195 0.88 -0.3 258,657 - OKGIIK_01195 0.89 -0.5 258,657 - OKGIIK_01195 0.89 -2.2 258,712 - -1.4 258,769 - -1.5 258,769 - -1.3 258,776 - -0.5 258,839 - +0.3 258,839 - -1.3 259,000 - OKGIIK_01200 0.12 -0.7 259,248 - OKGIIK_01200 0.24 -0.5 259,273 - OKGIIK_01200 0.25 +0.1 259,273 - OKGIIK_01200 0.25 -1.2 259,289 - OKGIIK_01200 0.26 +0.1 259,289 - OKGIIK_01200 0.26 +2.1 259,289 - OKGIIK_01200 0.26 -2.0 259,289 - OKGIIK_01200 0.26 -0.6 259,289 - OKGIIK_01200 0.26 -1.8 259,291 - OKGIIK_01200 0.26 -1.3 259,291 - OKGIIK_01200 0.26 -1.4 259,291 - OKGIIK_01200 0.26 -0.5 259,337 - OKGIIK_01200 0.28 -0.8 259,337 - OKGIIK_01200 0.28 -0.7 259,356 - OKGIIK_01200 0.29 +0.1 259,361 - OKGIIK_01200 0.30 -0.1 259,365 - OKGIIK_01200 0.30 -0.6 259,542 - OKGIIK_01200 0.39 -0.4 259,542 - OKGIIK_01200 0.39 -1.7 259,559 - OKGIIK_01200 0.39 +0.4
Or see this region's nucleotide sequence