Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01185

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetC and OKGIIK_01185 are separated by 49 nucleotidesOKGIIK_01185 and OKGIIK_01190 are separated by 13 nucleotides OKGIIK_01180: metC - cystathionine beta-lyase, at 254,110 to 255,279 metC OKGIIK_01185: OKGIIK_01185 - Glycosyl transferase, at 255,329 to 256,732 _01185 OKGIIK_01190: OKGIIK_01190 - Transport permease protein, at 256,746 to 257,540 _01190 Position (kb) 255 256 257Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 254.428 kb on + strand, within metCat 254.428 kb on + strand, within metCat 254.428 kb on + strand, within metCat 254.428 kb on + strand, within metCat 254.428 kb on + strand, within metCat 254.429 kb on - strand, within metCat 254.429 kb on - strand, within metCat 254.440 kb on + strand, within metCat 254.440 kb on + strand, within metCat 254.440 kb on + strand, within metCat 254.440 kb on + strand, within metCat 254.440 kb on + strand, within metCat 254.441 kb on - strand, within metCat 254.441 kb on - strand, within metCat 254.441 kb on - strand, within metCat 254.441 kb on - strand, within metCat 254.441 kb on - strand, within metCat 254.441 kb on - strand, within metCat 254.441 kb on - strand, within metCat 254.508 kb on + strand, within metCat 254.508 kb on + strand, within metCat 254.508 kb on + strand, within metCat 254.509 kb on - strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.725 kb on + strand, within metCat 254.726 kb on - strand, within metCat 254.726 kb on - strand, within metCat 254.726 kb on - strand, within metCat 254.726 kb on - strand, within metCat 254.726 kb on - strand, within metCat 254.959 kb on + strand, within metCat 255.270 kb on - strandat 255.270 kb on - strandat 255.270 kb on - strandat 255.273 kb on + strandat 255.273 kb on + strandat 255.273 kb on + strandat 255.273 kb on + strandat 255.273 kb on + strandat 255.273 kb on + strandat 255.273 kb on + strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.274 kb on - strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.294 kb on + strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.295 kb on - strandat 255.337 kb on + strandat 255.337 kb on + strandat 255.337 kb on + strandat 255.337 kb on + strandat 255.338 kb on - strandat 255.338 kb on - strandat 255.338 kb on - strandat 255.338 kb on - strandat 255.338 kb on - strandat 255.422 kb on + strandat 255.422 kb on + strandat 255.423 kb on - strandat 255.423 kb on - strandat 255.423 kb on - strandat 255.423 kb on - strandat 255.456 kb on + strandat 255.456 kb on + strandat 255.456 kb on + strandat 255.456 kb on + strandat 255.457 kb on - strandat 255.526 kb on + strand, within OKGIIK_01185at 255.526 kb on + strand, within OKGIIK_01185at 255.526 kb on + strand, within OKGIIK_01185at 255.526 kb on + strand, within OKGIIK_01185at 255.526 kb on + strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.527 kb on - strand, within OKGIIK_01185at 255.558 kb on + strand, within OKGIIK_01185at 255.558 kb on + strand, within OKGIIK_01185at 255.558 kb on + strand, within OKGIIK_01185at 255.558 kb on + strand, within OKGIIK_01185at 255.559 kb on - strand, within OKGIIK_01185at 255.559 kb on - strand, within OKGIIK_01185at 255.559 kb on - strand, within OKGIIK_01185at 255.559 kb on - strand, within OKGIIK_01185at 255.559 kb on - strand, within OKGIIK_01185at 255.562 kb on + strand, within OKGIIK_01185at 255.562 kb on + strand, within OKGIIK_01185at 255.563 kb on - strand, within OKGIIK_01185at 255.563 kb on - strand, within OKGIIK_01185at 255.563 kb on - strand, within OKGIIK_01185at 255.572 kb on + strand, within OKGIIK_01185at 255.572 kb on + strand, within OKGIIK_01185at 255.573 kb on - strand, within OKGIIK_01185at 255.573 kb on - strand, within OKGIIK_01185at 255.573 kb on - strand, within OKGIIK_01185at 255.606 kb on - strand, within OKGIIK_01185at 255.609 kb on + strand, within OKGIIK_01185at 255.610 kb on - strand, within OKGIIK_01185at 255.610 kb on - strand, within OKGIIK_01185at 255.610 kb on - strand, within OKGIIK_01185at 255.647 kb on + strand, within OKGIIK_01185at 255.689 kb on + strand, within OKGIIK_01185at 255.689 kb on + strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.690 kb on - strand, within OKGIIK_01185at 255.731 kb on - strand, within OKGIIK_01185at 255.731 kb on - strand, within OKGIIK_01185at 255.745 kb on + strand, within OKGIIK_01185at 255.764 kb on + strand, within OKGIIK_01185at 255.765 kb on - strand, within OKGIIK_01185at 255.778 kb on - strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.848 kb on + strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.849 kb on - strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 255.967 kb on + strand, within OKGIIK_01185at 256.079 kb on - strand, within OKGIIK_01185at 256.227 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.322 kb on + strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.323 kb on - strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.449 kb on + strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.450 kb on - strand, within OKGIIK_01185at 256.457 kb on + strand, within OKGIIK_01185at 256.457 kb on + strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.458 kb on - strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.487 kb on + strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.488 kb on - strand, within OKGIIK_01185at 256.570 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.579 kb on + strand, within OKGIIK_01185at 256.677 kb on + strandat 256.678 kb on - strandat 256.726 kb on + strandat 256.726 kb on + strandat 256.726 kb on + strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.730 kb on + strandat 256.731 kb on - strandat 256.888 kb on - strand, within OKGIIK_01190at 256.888 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 256.951 kb on - strand, within OKGIIK_01190at 257.085 kb on - strand, within OKGIIK_01190at 257.248 kb on + strand, within OKGIIK_01190at 257.328 kb on + strand, within OKGIIK_01190at 257.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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254,428 + metC OKGIIK_01180 0.27 -0.5
254,428 + metC OKGIIK_01180 0.27 -0.3
254,428 + metC OKGIIK_01180 0.27 -0.7
254,428 + metC OKGIIK_01180 0.27 +0.0
254,428 + metC OKGIIK_01180 0.27 -2.6
254,429 - metC OKGIIK_01180 0.27 -1.4
254,429 - metC OKGIIK_01180 0.27 -0.4
254,440 + metC OKGIIK_01180 0.28 -0.9
254,440 + metC OKGIIK_01180 0.28 +0.4
254,440 + metC OKGIIK_01180 0.28 -2.3
254,440 + metC OKGIIK_01180 0.28 -1.9
254,440 + metC OKGIIK_01180 0.28 +0.0
254,441 - metC OKGIIK_01180 0.28 -0.4
254,441 - metC OKGIIK_01180 0.28 +0.1
254,441 - metC OKGIIK_01180 0.28 +0.4
254,441 - metC OKGIIK_01180 0.28 -0.1
254,441 - metC OKGIIK_01180 0.28 -1.4
254,441 - metC OKGIIK_01180 0.28 -2.5
254,441 - metC OKGIIK_01180 0.28 -2.9
254,508 + metC OKGIIK_01180 0.34 -1.3
254,508 + metC OKGIIK_01180 0.34 -1.5
254,508 + metC OKGIIK_01180 0.34 +0.5
254,509 - metC OKGIIK_01180 0.34 -1.4
254,725 + metC OKGIIK_01180 0.53 -0.3
254,725 + metC OKGIIK_01180 0.53 -1.4
254,725 + metC OKGIIK_01180 0.53 -2.0
254,725 + metC OKGIIK_01180 0.53 +0.3
254,725 + metC OKGIIK_01180 0.53 -0.5
254,725 + metC OKGIIK_01180 0.53 +0.5
254,725 + metC OKGIIK_01180 0.53 -0.3
254,725 + metC OKGIIK_01180 0.53 -1.6
254,726 - metC OKGIIK_01180 0.53 -0.1
254,726 - metC OKGIIK_01180 0.53 -1.4
254,726 - metC OKGIIK_01180 0.53 -0.9
254,726 - metC OKGIIK_01180 0.53 -1.4
254,726 - metC OKGIIK_01180 0.53 +0.6
254,959 + metC OKGIIK_01180 0.73 +0.1
255,270 - +0.5
255,270 - -0.5
255,270 - +0.1
255,273 + +0.5
255,273 + -1.0
255,273 + -1.5
255,273 + -0.5
255,273 + -0.8
255,273 + +0.6
255,273 + +1.5
255,274 - +0.7
255,274 - -1.7
255,274 - +0.7
255,274 - -2.6
255,274 - -0.3
255,274 - +1.1
255,274 - -0.4
255,274 - -1.3
255,274 - -2.3
255,294 + +0.7
255,294 + -1.1
255,294 + +0.4
255,294 + +1.3
255,294 + -1.5
255,294 + +0.7
255,294 + +1.7
255,294 + +0.1
255,294 + -0.7
255,295 - +0.3
255,295 - -1.4
255,295 - -0.5
255,295 - +0.3
255,295 - -1.6
255,295 - +0.3
255,295 - +0.5
255,295 - +0.7
255,295 - -0.3
255,295 - +0.1
255,295 - +1.2
255,295 - +2.6
255,337 + -1.1
255,337 + +1.6
255,337 + +1.1
255,337 + +0.6
255,338 - -1.3
255,338 - +0.8
255,338 - -0.3
255,338 - +2.3
255,338 - -0.9
255,422 + -0.5
255,422 + -0.1
255,423 - -0.5
255,423 - -0.7
255,423 - +0.1
255,423 - +0.1
255,456 + -0.7
255,456 + -1.4
255,456 + -0.3
255,456 + -0.3
255,457 - -1.2
255,526 + OKGIIK_01185 0.14 -0.3
255,526 + OKGIIK_01185 0.14 -0.3
255,526 + OKGIIK_01185 0.14 -0.5
255,526 + OKGIIK_01185 0.14 +0.1
255,526 + OKGIIK_01185 0.14 -0.5
255,527 - OKGIIK_01185 0.14 -1.5
255,527 - OKGIIK_01185 0.14 -1.5
255,527 - OKGIIK_01185 0.14 -1.5
255,527 - OKGIIK_01185 0.14 -1.3
255,527 - OKGIIK_01185 0.14 -0.6
255,527 - OKGIIK_01185 0.14 -0.5
255,527 - OKGIIK_01185 0.14 +1.2
255,527 - OKGIIK_01185 0.14 -0.3
255,558 + OKGIIK_01185 0.16 -1.3
255,558 + OKGIIK_01185 0.16 -0.1
255,558 + OKGIIK_01185 0.16 -1.0
255,558 + OKGIIK_01185 0.16 -2.5
255,559 - OKGIIK_01185 0.16 +0.1
255,559 - OKGIIK_01185 0.16 +0.6
255,559 - OKGIIK_01185 0.16 +0.1
255,559 - OKGIIK_01185 0.16 +1.1
255,559 - OKGIIK_01185 0.16 -1.8
255,562 + OKGIIK_01185 0.17 -0.6
255,562 + OKGIIK_01185 0.17 -1.1
255,563 - OKGIIK_01185 0.17 -0.4
255,563 - OKGIIK_01185 0.17 +1.1
255,563 - OKGIIK_01185 0.17 -0.3
255,572 + OKGIIK_01185 0.17 -0.9
255,572 + OKGIIK_01185 0.17 +0.1
255,573 - OKGIIK_01185 0.17 -1.3
255,573 - OKGIIK_01185 0.17 +0.1
255,573 - OKGIIK_01185 0.17 -3.9
255,606 - OKGIIK_01185 0.20 -2.0
255,609 + OKGIIK_01185 0.20 -0.4
255,610 - OKGIIK_01185 0.20 -1.3
255,610 - OKGIIK_01185 0.20 +1.5
255,610 - OKGIIK_01185 0.20 -1.5
255,647 + OKGIIK_01185 0.23 -2.1
255,689 + OKGIIK_01185 0.26 -0.5
255,689 + OKGIIK_01185 0.26 +0.5
255,690 - OKGIIK_01185 0.26 +0.2
255,690 - OKGIIK_01185 0.26 -0.7
255,690 - OKGIIK_01185 0.26 -0.1
255,690 - OKGIIK_01185 0.26 -1.6
255,690 - OKGIIK_01185 0.26 -0.8
255,690 - OKGIIK_01185 0.26 +0.5
255,690 - OKGIIK_01185 0.26 -2.1
255,690 - OKGIIK_01185 0.26 -0.9
255,731 - OKGIIK_01185 0.29 -0.5
255,731 - OKGIIK_01185 0.29 +0.1
255,745 + OKGIIK_01185 0.30 -0.7
255,764 + OKGIIK_01185 0.31 +0.7
255,765 - OKGIIK_01185 0.31 +0.1
255,778 - OKGIIK_01185 0.32 -0.1
255,848 + OKGIIK_01185 0.37 -1.9
255,848 + OKGIIK_01185 0.37 +0.1
255,849 - OKGIIK_01185 0.37 -0.3
255,849 - OKGIIK_01185 0.37 -0.3
255,849 - OKGIIK_01185 0.37 -0.3
255,849 - OKGIIK_01185 0.37 +0.6
255,967 + OKGIIK_01185 0.45 -0.5
255,967 + OKGIIK_01185 0.45 -1.5
255,967 + OKGIIK_01185 0.45 +0.8
255,967 + OKGIIK_01185 0.45 -3.5
255,967 + OKGIIK_01185 0.45 -0.3
255,967 + OKGIIK_01185 0.45 -1.3
256,079 - OKGIIK_01185 0.53 -0.7
256,227 + OKGIIK_01185 0.64 +1.2
256,322 + OKGIIK_01185 0.71 -1.6
256,322 + OKGIIK_01185 0.71 -0.3
256,323 - OKGIIK_01185 0.71 -1.3
256,323 - OKGIIK_01185 0.71 -1.7
256,449 + OKGIIK_01185 0.80 -0.1
256,449 + OKGIIK_01185 0.80 +1.1
256,449 + OKGIIK_01185 0.80 -1.9
256,449 + OKGIIK_01185 0.80 +0.3
256,450 - OKGIIK_01185 0.80 -1.3
256,450 - OKGIIK_01185 0.80 -1.8
256,450 - OKGIIK_01185 0.80 -0.3
256,457 + OKGIIK_01185 0.80 -0.3
256,457 + OKGIIK_01185 0.80 -0.9
256,458 - OKGIIK_01185 0.80 -0.1
256,458 - OKGIIK_01185 0.80 -0.4
256,458 - OKGIIK_01185 0.80 -0.5
256,487 + OKGIIK_01185 0.82 +0.1
256,487 + OKGIIK_01185 0.82 -0.5
256,487 + OKGIIK_01185 0.82 -0.9
256,487 + OKGIIK_01185 0.82 -0.4
256,487 + OKGIIK_01185 0.82 +0.7
256,487 + OKGIIK_01185 0.82 +0.1
256,488 - OKGIIK_01185 0.83 +0.9
256,488 - OKGIIK_01185 0.83 +0.9
256,570 + OKGIIK_01185 0.88 -1.1
256,579 + OKGIIK_01185 0.89 +0.3
256,579 + OKGIIK_01185 0.89 +1.8
256,677 + +1.6
256,678 - -0.3
256,726 + +2.1
256,726 + -1.8
256,726 + +0.8
256,730 + -0.9
256,730 + -0.5
256,730 + -0.9
256,731 - -0.3
256,888 - OKGIIK_01190 0.18 -1.1
256,888 - OKGIIK_01190 0.18 +0.1
256,951 - OKGIIK_01190 0.26 -0.3
256,951 - OKGIIK_01190 0.26 +0.1
257,085 - OKGIIK_01190 0.43 -1.1
257,248 + OKGIIK_01190 0.63 +0.6
257,328 + OKGIIK_01190 0.73 -1.1
257,589 - -0.8

Or see this region's nucleotide sequence