Experiment: R2A_PIPES with Cadmium chloride 128 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00675 and OKGIIK_00680 are separated by 136 nucleotides OKGIIK_00680 and OKGIIK_00685 are separated by 483 nucleotides OKGIIK_00685 and rocF are separated by 17 nucleotides rocF and OKGIIK_00695 are separated by 52 nucleotides
OKGIIK_00675: OKGIIK_00675 - hypothetical protein, at 150,055 to 150,306
_00675
OKGIIK_00680: OKGIIK_00680 - hypothetical protein, at 150,443 to 150,718
_00680
OKGIIK_00685: OKGIIK_00685 - hypothetical protein, at 151,202 to 151,897
_00685
OKGIIK_00690: rocF - arginase, at 151,915 to 152,829
rocF
OKGIIK_00695: OKGIIK_00695 - UPF0339 protein in ptx operon 5'region, at 152,882 to 153,211
_00695
Position (kb) 151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.230 kb on - strand, within OKGIIK_00675 at 150.230 kb on - strand, within OKGIIK_00675 at 150.256 kb on + strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.257 kb on - strand, within OKGIIK_00675 at 150.304 kb on + strand at 150.305 kb on - strand at 150.308 kb on + strand at 150.308 kb on + strand at 150.308 kb on + strand at 150.309 kb on - strand at 150.309 kb on - strand at 150.309 kb on - strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.350 kb on + strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.351 kb on - strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.366 kb on + strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.367 kb on - strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.408 kb on + strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.409 kb on - strand at 150.551 kb on + strand, within OKGIIK_00680 at 150.551 kb on + strand, within OKGIIK_00680 at 150.551 kb on + strand, within OKGIIK_00680 at 150.551 kb on + strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.552 kb on - strand, within OKGIIK_00680 at 150.681 kb on - strand, within OKGIIK_00680 at 150.681 kb on - strand, within OKGIIK_00680 at 150.839 kb on + strand at 150.839 kb on + strand at 150.840 kb on - strand at 150.855 kb on + strand at 150.855 kb on + strand at 150.855 kb on + strand at 150.855 kb on + strand at 150.856 kb on - strand at 150.856 kb on - strand at 150.901 kb on + strand at 150.901 kb on + strand at 150.901 kb on + strand at 150.901 kb on + strand at 150.902 kb on - strand at 150.902 kb on - strand at 150.902 kb on - strand at 150.902 kb on - strand at 150.918 kb on + strand at 150.918 kb on + strand at 150.918 kb on + strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 150.919 kb on - strand at 151.004 kb on + strand at 151.004 kb on + strand at 151.004 kb on + strand at 151.005 kb on - strand at 151.005 kb on - strand at 151.005 kb on - strand at 151.005 kb on - strand at 151.094 kb on + strand at 151.095 kb on - strand at 151.612 kb on + strand, within OKGIIK_00685 at 151.613 kb on - strand, within OKGIIK_00685 at 151.613 kb on - strand, within OKGIIK_00685 at 151.613 kb on - strand, within OKGIIK_00685 at 151.613 kb on - strand, within OKGIIK_00685 at 151.774 kb on - strand, within OKGIIK_00685 at 151.902 kb on + strand at 151.902 kb on + strand at 151.902 kb on + strand at 151.903 kb on - strand at 151.903 kb on - strand at 151.903 kb on - strand at 151.914 kb on + strand at 151.914 kb on + strand at 151.914 kb on + strand at 151.914 kb on + strand at 151.914 kb on + strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 151.915 kb on - strand at 152.139 kb on + strand, within rocF at 152.139 kb on + strand, within rocF at 152.140 kb on - strand, within rocF at 152.149 kb on + strand, within rocF at 152.149 kb on + strand, within rocF at 152.149 kb on + strand, within rocF at 152.150 kb on - strand, within rocF at 152.150 kb on - strand, within rocF at 152.437 kb on + strand, within rocF at 152.437 kb on + strand, within rocF at 152.437 kb on + strand, within rocF at 152.437 kb on + strand, within rocF at 152.438 kb on - strand, within rocF at 152.438 kb on - strand, within rocF at 152.438 kb on - strand, within rocF at 152.438 kb on - strand, within rocF at 152.480 kb on + strand, within rocF at 152.517 kb on + strand, within rocF at 152.666 kb on - strand, within rocF at 152.666 kb on - strand, within rocF at 152.841 kb on + strand at 152.842 kb on - strand at 152.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM remove 150,230 - OKGIIK_00675 0.69 +0.5 150,230 - OKGIIK_00675 0.69 -0.4 150,256 + OKGIIK_00675 0.80 -0.8 150,257 - OKGIIK_00675 0.80 -0.0 150,257 - OKGIIK_00675 0.80 +1.4 150,257 - OKGIIK_00675 0.80 +1.7 150,257 - OKGIIK_00675 0.80 -0.1 150,257 - OKGIIK_00675 0.80 -1.5 150,257 - OKGIIK_00675 0.80 -1.0 150,304 + -0.6 150,305 - -1.0 150,308 + -0.7 150,308 + -0.3 150,308 + -0.6 150,309 - +1.2 150,309 - -1.6 150,309 - -0.6 150,350 + -0.6 150,350 + -1.3 150,350 + +0.1 150,350 + +1.0 150,350 + -0.1 150,350 + +0.0 150,350 + +0.4 150,350 + -1.1 150,350 + +0.8 150,350 + +2.2 150,351 - -0.9 150,351 - -1.2 150,351 - -0.6 150,351 - -1.2 150,351 - +1.0 150,351 - +0.1 150,351 - +1.3 150,351 - -0.9 150,351 - -1.9 150,351 - +0.4 150,351 - -1.5 150,366 + +0.4 150,366 + -1.3 150,366 + -1.1 150,366 + +0.4 150,366 + -0.8 150,366 + -0.8 150,366 + -1.3 150,366 + -0.3 150,366 + -2.0 150,366 + -0.6 150,366 + +1.3 150,366 + -1.7 150,366 + -1.6 150,366 + -0.6 150,367 - -0.7 150,367 - -2.4 150,367 - -0.3 150,367 - -0.8 150,367 - -0.6 150,367 - +0.8 150,367 - +0.3 150,367 - -0.8 150,367 - +0.4 150,367 - -0.3 150,367 - +0.6 150,408 + +0.4 150,408 + +0.1 150,408 + +0.6 150,408 + -1.0 150,408 + -1.3 150,408 + +1.4 150,408 + +0.4 150,409 - -0.6 150,409 - -1.0 150,409 - +0.0 150,409 - +0.1 150,409 - +0.3 150,551 + OKGIIK_00680 0.39 -0.3 150,551 + OKGIIK_00680 0.39 -1.3 150,551 + OKGIIK_00680 0.39 -1.2 150,551 + OKGIIK_00680 0.39 -1.5 150,552 - OKGIIK_00680 0.39 +0.7 150,552 - OKGIIK_00680 0.39 +1.2 150,552 - OKGIIK_00680 0.39 +0.5 150,552 - OKGIIK_00680 0.39 +0.4 150,681 - OKGIIK_00680 0.86 -0.9 150,681 - OKGIIK_00680 0.86 -0.3 150,839 + +0.9 150,839 + +1.0 150,840 - -0.4 150,855 + +0.0 150,855 + -1.3 150,855 + -1.5 150,855 + -0.8 150,856 - +1.0 150,856 - +1.5 150,901 + +0.4 150,901 + -1.5 150,901 + +0.8 150,901 + +0.6 150,902 - -1.6 150,902 - -0.6 150,902 - +0.6 150,902 - +0.8 150,918 + -1.3 150,918 + -0.3 150,918 + -0.4 150,919 - +0.5 150,919 - +0.0 150,919 - -0.8 150,919 - -0.2 150,919 - -0.1 150,919 - -1.3 150,919 - -0.3 150,919 - +0.5 150,919 - -0.1 150,919 - +0.9 151,004 + +0.0 151,004 + +1.3 151,004 + +0.0 151,005 - +0.0 151,005 - -0.8 151,005 - +1.7 151,005 - -0.2 151,094 + +1.3 151,095 - +0.6 151,612 + OKGIIK_00685 0.59 -1.5 151,613 - OKGIIK_00685 0.59 -0.6 151,613 - OKGIIK_00685 0.59 -0.7 151,613 - OKGIIK_00685 0.59 -1.3 151,613 - OKGIIK_00685 0.59 +0.0 151,774 - OKGIIK_00685 0.82 -0.3 151,902 + +1.2 151,902 + +1.0 151,902 + +0.7 151,903 - -1.6 151,903 - -0.3 151,903 - +0.3 151,914 + -0.2 151,914 + +0.4 151,914 + -1.2 151,914 + +1.5 151,914 + -1.1 151,915 - -0.9 151,915 - -0.2 151,915 - -0.5 151,915 - +0.3 151,915 - -0.3 151,915 - +0.6 151,915 - -1.7 151,915 - +0.4 151,915 - +1.6 151,915 - +0.2 152,139 + rocF OKGIIK_00690 0.24 -1.5 152,139 + rocF OKGIIK_00690 0.24 -0.3 152,140 - rocF OKGIIK_00690 0.25 -0.6 152,149 + rocF OKGIIK_00690 0.26 -0.4 152,149 + rocF OKGIIK_00690 0.26 -1.3 152,149 + rocF OKGIIK_00690 0.26 +1.0 152,150 - rocF OKGIIK_00690 0.26 +1.7 152,150 - rocF OKGIIK_00690 0.26 +0.8 152,437 + rocF OKGIIK_00690 0.57 -0.4 152,437 + rocF OKGIIK_00690 0.57 -1.0 152,437 + rocF OKGIIK_00690 0.57 +1.0 152,437 + rocF OKGIIK_00690 0.57 +0.5 152,438 - rocF OKGIIK_00690 0.57 +1.2 152,438 - rocF OKGIIK_00690 0.57 +0.8 152,438 - rocF OKGIIK_00690 0.57 -1.5 152,438 - rocF OKGIIK_00690 0.57 -0.2 152,480 + rocF OKGIIK_00690 0.62 -0.4 152,517 + rocF OKGIIK_00690 0.66 -0.1 152,666 - rocF OKGIIK_00690 0.82 -0.9 152,666 - rocF OKGIIK_00690 0.82 +0.1 152,841 + -1.8 152,842 - +0.0 152,842 - -1.2
Or see this region's nucleotide sequence