Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00590

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00585 and vgrG overlap by 4 nucleotidesvgrG and OKGIIK_00595 are separated by 340 nucleotidesOKGIIK_00595 and OKGIIK_00600 are separated by 10 nucleotides OKGIIK_00585: OKGIIK_00585 - hypothetical protein, at 129,937 to 131,073 _00585 OKGIIK_00590: vgrG - baseplate assembly protein, at 131,070 to 131,576 vgrG OKGIIK_00595: OKGIIK_00595 - hypothetical protein, at 131,917 to 132,240 _00595 OKGIIK_00600: OKGIIK_00600 - GPW-gp25 domain-containing protein, at 132,251 to 132,610 _00600 Position (kb) 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 130.321 kb on + strand, within OKGIIK_00585at 130.369 kb on + strand, within OKGIIK_00585at 130.369 kb on + strand, within OKGIIK_00585at 130.369 kb on + strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.501 kb on + strand, within OKGIIK_00585at 130.502 kb on - strand, within OKGIIK_00585at 130.502 kb on - strand, within OKGIIK_00585at 130.502 kb on - strand, within OKGIIK_00585at 130.510 kb on + strand, within OKGIIK_00585at 130.510 kb on + strand, within OKGIIK_00585at 130.510 kb on + strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.550 kb on - strand, within OKGIIK_00585at 130.550 kb on - strand, within OKGIIK_00585at 130.550 kb on - strand, within OKGIIK_00585at 130.642 kb on + strand, within OKGIIK_00585at 130.643 kb on - strand, within OKGIIK_00585at 130.643 kb on - strand, within OKGIIK_00585at 130.643 kb on - strand, within OKGIIK_00585at 130.675 kb on + strand, within OKGIIK_00585at 130.675 kb on + strand, within OKGIIK_00585at 130.675 kb on + strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.676 kb on - strand, within OKGIIK_00585at 130.804 kb on + strand, within OKGIIK_00585at 130.804 kb on + strand, within OKGIIK_00585at 130.804 kb on + strand, within OKGIIK_00585at 130.969 kb on + strandat 130.969 kb on + strandat 130.969 kb on + strandat 130.970 kb on - strandat 130.970 kb on - strandat 130.970 kb on - strandat 130.970 kb on - strandat 130.970 kb on - strandat 130.970 kb on - strandat 131.008 kb on + strandat 131.008 kb on + strandat 131.009 kb on - strandat 131.009 kb on - strandat 131.009 kb on - strandat 131.009 kb on - strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.079 kb on + strandat 131.080 kb on - strandat 131.080 kb on - strandat 131.080 kb on - strandat 131.080 kb on - strandat 131.080 kb on - strandat 131.082 kb on + strandat 131.082 kb on + strandat 131.082 kb on + strandat 131.082 kb on + strandat 131.083 kb on - strandat 131.083 kb on - strandat 131.083 kb on - strandat 131.091 kb on + strandat 131.091 kb on + strandat 131.092 kb on - strandat 131.229 kb on + strand, within vgrGat 131.229 kb on + strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.230 kb on - strand, within vgrGat 131.289 kb on + strand, within vgrGat 131.717 kb on + strandat 131.719 kb on + strandat 131.720 kb on - strandat 131.720 kb on - strandat 131.903 kb on + strandat 131.903 kb on + strandat 131.904 kb on - strandat 131.904 kb on - strandat 132.528 kb on + strand, within OKGIIK_00600at 132.552 kb on - strand, within OKGIIK_00600at 132.552 kb on - strand, within OKGIIK_00600

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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130,321 + OKGIIK_00585 0.34 +0.5
130,369 + OKGIIK_00585 0.38 -0.3
130,369 + OKGIIK_00585 0.38 -1.6
130,369 + OKGIIK_00585 0.38 -0.8
130,370 - OKGIIK_00585 0.38 -0.3
130,370 - OKGIIK_00585 0.38 +0.0
130,370 - OKGIIK_00585 0.38 +0.0
130,370 - OKGIIK_00585 0.38 -3.3
130,471 + OKGIIK_00585 0.47 +0.1
130,471 + OKGIIK_00585 0.47 -0.9
130,471 + OKGIIK_00585 0.47 +1.0
130,471 + OKGIIK_00585 0.47 -0.7
130,471 + OKGIIK_00585 0.47 -0.3
130,471 + OKGIIK_00585 0.47 +1.3
130,471 + OKGIIK_00585 0.47 -0.6
130,472 - OKGIIK_00585 0.47 -0.6
130,472 - OKGIIK_00585 0.47 +0.0
130,472 - OKGIIK_00585 0.47 -0.2
130,472 - OKGIIK_00585 0.47 -0.7
130,472 - OKGIIK_00585 0.47 +0.0
130,472 - OKGIIK_00585 0.47 +0.0
130,472 - OKGIIK_00585 0.47 -2.5
130,472 - OKGIIK_00585 0.47 +0.2
130,472 - OKGIIK_00585 0.47 +1.0
130,472 - OKGIIK_00585 0.47 +0.4
130,472 - OKGIIK_00585 0.47 -0.7
130,501 + OKGIIK_00585 0.50 +1.0
130,502 - OKGIIK_00585 0.50 -0.6
130,502 - OKGIIK_00585 0.50 -0.2
130,502 - OKGIIK_00585 0.50 +0.4
130,510 + OKGIIK_00585 0.50 -1.8
130,510 + OKGIIK_00585 0.50 +1.0
130,510 + OKGIIK_00585 0.50 -0.6
130,511 - OKGIIK_00585 0.50 -2.2
130,511 - OKGIIK_00585 0.50 -0.3
130,511 - OKGIIK_00585 0.50 +0.5
130,511 - OKGIIK_00585 0.50 +1.3
130,550 - OKGIIK_00585 0.54 +0.6
130,550 - OKGIIK_00585 0.54 +0.9
130,550 - OKGIIK_00585 0.54 +0.3
130,642 + OKGIIK_00585 0.62 +0.1
130,643 - OKGIIK_00585 0.62 -2.0
130,643 - OKGIIK_00585 0.62 -1.2
130,643 - OKGIIK_00585 0.62 -0.3
130,675 + OKGIIK_00585 0.65 -0.6
130,675 + OKGIIK_00585 0.65 -0.8
130,675 + OKGIIK_00585 0.65 -0.2
130,676 - OKGIIK_00585 0.65 -0.6
130,676 - OKGIIK_00585 0.65 +0.1
130,676 - OKGIIK_00585 0.65 -1.9
130,676 - OKGIIK_00585 0.65 +1.6
130,676 - OKGIIK_00585 0.65 +0.3
130,676 - OKGIIK_00585 0.65 -0.3
130,676 - OKGIIK_00585 0.65 -0.3
130,804 + OKGIIK_00585 0.76 -0.3
130,804 + OKGIIK_00585 0.76 -0.3
130,804 + OKGIIK_00585 0.76 -0.2
130,969 + +0.0
130,969 + -0.1
130,969 + -0.1
130,970 - +0.3
130,970 - -1.0
130,970 - -1.2
130,970 - -0.3
130,970 - -2.1
130,970 - +1.4
131,008 + +0.7
131,008 + -1.1
131,009 - -1.1
131,009 - -2.0
131,009 - -1.0
131,009 - -0.6
131,079 + -0.8
131,079 + -0.3
131,079 + -1.9
131,079 + -1.5
131,079 + +0.4
131,079 + -0.3
131,079 + +0.3
131,079 + -1.6
131,079 + +0.6
131,079 + +1.0
131,080 - -1.5
131,080 - -0.7
131,080 - -1.5
131,080 - -1.6
131,080 - -1.0
131,082 + -2.2
131,082 + -1.1
131,082 + +1.0
131,082 + -1.4
131,083 - -0.7
131,083 - -2.2
131,083 - +0.1
131,091 + -0.3
131,091 + +2.0
131,092 - -0.5
131,229 + vgrG OKGIIK_00590 0.31 +0.3
131,229 + vgrG OKGIIK_00590 0.31 -0.3
131,230 - vgrG OKGIIK_00590 0.32 -0.8
131,230 - vgrG OKGIIK_00590 0.32 -0.6
131,230 - vgrG OKGIIK_00590 0.32 +0.6
131,230 - vgrG OKGIIK_00590 0.32 -1.7
131,230 - vgrG OKGIIK_00590 0.32 -1.3
131,230 - vgrG OKGIIK_00590 0.32 -1.3
131,230 - vgrG OKGIIK_00590 0.32 -0.3
131,289 + vgrG OKGIIK_00590 0.43 -1.0
131,717 + +0.4
131,719 + -0.4
131,720 - -0.4
131,720 - +0.5
131,903 + +0.2
131,903 + +0.8
131,904 - -0.8
131,904 - -2.5
132,528 + OKGIIK_00600 0.77 -0.8
132,552 - OKGIIK_00600 0.84 -0.8
132,552 - OKGIIK_00600 0.84 +0.3

Or see this region's nucleotide sequence