Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00575

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00565 and OKGIIK_00570 are separated by 17 nucleotidesOKGIIK_00570 and OKGIIK_00575 overlap by 4 nucleotidesOKGIIK_00575 and OKGIIK_00580 overlap by 1 nucleotidesOKGIIK_00580 and OKGIIK_00585 overlap by 8 nucleotides OKGIIK_00565: OKGIIK_00565 - hypothetical protein, at 127,395 to 128,198 _00565 OKGIIK_00570: OKGIIK_00570 - Peptidoglycan-binding protein, at 128,216 to 128,971 _00570 OKGIIK_00575: OKGIIK_00575 - Contractile injection system tube protein, at 128,968 to 129,624 _00575 OKGIIK_00580: OKGIIK_00580 - hypothetical protein, at 129,624 to 129,944 _00580 OKGIIK_00585: OKGIIK_00585 - hypothetical protein, at 129,937 to 131,073 _00585 Position (kb) 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1at 128.076 kb on + strand, within OKGIIK_00565at 128.076 kb on + strand, within OKGIIK_00565at 128.076 kb on + strand, within OKGIIK_00565at 128.076 kb on + strand, within OKGIIK_00565at 128.076 kb on + strand, within OKGIIK_00565at 128.076 kb on + strand, within OKGIIK_00565at 128.076 kb on + strand, within OKGIIK_00565at 128.077 kb on - strand, within OKGIIK_00565at 128.077 kb on - strand, within OKGIIK_00565at 128.077 kb on - strand, within OKGIIK_00565at 128.077 kb on - strand, within OKGIIK_00565at 128.221 kb on + strandat 128.221 kb on + strandat 128.221 kb on + strandat 128.222 kb on - strandat 128.222 kb on - strandat 128.222 kb on - strandat 128.222 kb on - strandat 128.222 kb on - strandat 128.222 kb on - strandat 128.222 kb on - strandat 128.468 kb on + strand, within OKGIIK_00570at 128.468 kb on + strand, within OKGIIK_00570at 128.469 kb on - strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.594 kb on + strand, within OKGIIK_00570at 128.595 kb on - strand, within OKGIIK_00570at 128.595 kb on - strand, within OKGIIK_00570at 128.595 kb on - strand, within OKGIIK_00570at 128.595 kb on - strand, within OKGIIK_00570at 128.595 kb on - strand, within OKGIIK_00570at 128.657 kb on + strand, within OKGIIK_00570at 128.657 kb on + strand, within OKGIIK_00570at 128.657 kb on + strand, within OKGIIK_00570at 128.658 kb on - strand, within OKGIIK_00570at 128.658 kb on - strand, within OKGIIK_00570at 128.658 kb on - strand, within OKGIIK_00570at 128.658 kb on - strand, within OKGIIK_00570at 128.658 kb on - strand, within OKGIIK_00570at 128.703 kb on - strand, within OKGIIK_00570at 128.703 kb on - strand, within OKGIIK_00570at 128.703 kb on - strand, within OKGIIK_00570at 128.774 kb on + strand, within OKGIIK_00570at 128.774 kb on + strand, within OKGIIK_00570at 128.876 kb on + strand, within OKGIIK_00570at 128.876 kb on + strand, within OKGIIK_00570at 128.876 kb on + strand, within OKGIIK_00570at 128.876 kb on + strand, within OKGIIK_00570at 128.876 kb on + strand, within OKGIIK_00570at 128.877 kb on - strand, within OKGIIK_00570at 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.921 kb on + strandat 128.922 kb on - strandat 128.922 kb on - strandat 128.922 kb on - strandat 128.922 kb on - strandat 128.922 kb on - strandat 129.064 kb on + strand, within OKGIIK_00575at 129.064 kb on + strand, within OKGIIK_00575at 129.064 kb on + strand, within OKGIIK_00575at 129.064 kb on + strand, within OKGIIK_00575at 129.064 kb on + strand, within OKGIIK_00575at 129.065 kb on - strand, within OKGIIK_00575at 129.065 kb on - strand, within OKGIIK_00575at 129.065 kb on - strand, within OKGIIK_00575at 129.065 kb on - strand, within OKGIIK_00575at 129.065 kb on - strand, within OKGIIK_00575at 129.065 kb on - strand, within OKGIIK_00575at 129.098 kb on + strand, within OKGIIK_00575at 129.099 kb on - strand, within OKGIIK_00575at 129.099 kb on - strand, within OKGIIK_00575at 129.284 kb on - strand, within OKGIIK_00575at 129.548 kb on - strand, within OKGIIK_00575at 129.548 kb on - strand, within OKGIIK_00575at 129.548 kb on - strand, within OKGIIK_00575at 129.548 kb on - strand, within OKGIIK_00575at 129.709 kb on - strand, within OKGIIK_00580at 129.709 kb on - strand, within OKGIIK_00580at 129.709 kb on - strand, within OKGIIK_00580at 129.709 kb on - strand, within OKGIIK_00580at 129.923 kb on - strandat 130.321 kb on + strand, within OKGIIK_00585at 130.369 kb on + strand, within OKGIIK_00585at 130.369 kb on + strand, within OKGIIK_00585at 130.369 kb on + strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.370 kb on - strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.471 kb on + strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.472 kb on - strand, within OKGIIK_00585at 130.501 kb on + strand, within OKGIIK_00585at 130.502 kb on - strand, within OKGIIK_00585at 130.502 kb on - strand, within OKGIIK_00585at 130.502 kb on - strand, within OKGIIK_00585at 130.510 kb on + strand, within OKGIIK_00585at 130.510 kb on + strand, within OKGIIK_00585at 130.510 kb on + strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.511 kb on - strand, within OKGIIK_00585at 130.550 kb on - strand, within OKGIIK_00585at 130.550 kb on - strand, within OKGIIK_00585at 130.550 kb on - strand, within OKGIIK_00585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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128,076 + OKGIIK_00565 0.85 +1.5
128,076 + OKGIIK_00565 0.85 +0.2
128,076 + OKGIIK_00565 0.85 -1.9
128,076 + OKGIIK_00565 0.85 -0.8
128,076 + OKGIIK_00565 0.85 +0.2
128,076 + OKGIIK_00565 0.85 -0.8
128,076 + OKGIIK_00565 0.85 +0.7
128,077 - OKGIIK_00565 0.85 -1.7
128,077 - OKGIIK_00565 0.85 -1.6
128,077 - OKGIIK_00565 0.85 -0.3
128,077 - OKGIIK_00565 0.85 -0.9
128,221 + +0.4
128,221 + +0.8
128,221 + +0.0
128,222 - +0.6
128,222 - +0.4
128,222 - -1.6
128,222 - -2.3
128,222 - -0.6
128,222 - +0.6
128,222 - -0.3
128,468 + OKGIIK_00570 0.33 -1.0
128,468 + OKGIIK_00570 0.33 -0.1
128,469 - OKGIIK_00570 0.33 -2.2
128,594 + OKGIIK_00570 0.50 -1.0
128,594 + OKGIIK_00570 0.50 -0.3
128,594 + OKGIIK_00570 0.50 +0.0
128,594 + OKGIIK_00570 0.50 +0.6
128,594 + OKGIIK_00570 0.50 -0.3
128,594 + OKGIIK_00570 0.50 +0.5
128,594 + OKGIIK_00570 0.50 -0.1
128,594 + OKGIIK_00570 0.50 -1.0
128,595 - OKGIIK_00570 0.50 -1.5
128,595 - OKGIIK_00570 0.50 +0.7
128,595 - OKGIIK_00570 0.50 +0.0
128,595 - OKGIIK_00570 0.50 +0.5
128,595 - OKGIIK_00570 0.50 -0.9
128,657 + OKGIIK_00570 0.58 +0.8
128,657 + OKGIIK_00570 0.58 -2.4
128,657 + OKGIIK_00570 0.58 +0.0
128,658 - OKGIIK_00570 0.58 +1.5
128,658 - OKGIIK_00570 0.58 -0.5
128,658 - OKGIIK_00570 0.58 +0.0
128,658 - OKGIIK_00570 0.58 -0.6
128,658 - OKGIIK_00570 0.58 -0.1
128,703 - OKGIIK_00570 0.64 +0.0
128,703 - OKGIIK_00570 0.64 -1.5
128,703 - OKGIIK_00570 0.64 -1.5
128,774 + OKGIIK_00570 0.74 -0.3
128,774 + OKGIIK_00570 0.74 +0.3
128,876 + OKGIIK_00570 0.87 -0.5
128,876 + OKGIIK_00570 0.87 -0.3
128,876 + OKGIIK_00570 0.87 -1.5
128,876 + OKGIIK_00570 0.87 -2.1
128,876 + OKGIIK_00570 0.87 +1.3
128,877 - OKGIIK_00570 0.87 -0.3
128,921 + -0.5
128,921 + +0.0
128,921 + +0.5
128,921 + +0.6
128,921 + -1.2
128,921 + -0.3
128,921 + +0.0
128,921 + -0.2
128,921 + -0.7
128,921 + -0.8
128,922 - +0.7
128,922 - -0.8
128,922 - -0.3
128,922 - -1.1
128,922 - -1.2
129,064 + OKGIIK_00575 0.15 -1.2
129,064 + OKGIIK_00575 0.15 +0.9
129,064 + OKGIIK_00575 0.15 +0.1
129,064 + OKGIIK_00575 0.15 -0.6
129,064 + OKGIIK_00575 0.15 -0.3
129,065 - OKGIIK_00575 0.15 +0.0
129,065 - OKGIIK_00575 0.15 -0.3
129,065 - OKGIIK_00575 0.15 -1.3
129,065 - OKGIIK_00575 0.15 -0.8
129,065 - OKGIIK_00575 0.15 -0.3
129,065 - OKGIIK_00575 0.15 -0.8
129,098 + OKGIIK_00575 0.20 +0.0
129,099 - OKGIIK_00575 0.20 +0.0
129,099 - OKGIIK_00575 0.20 +0.0
129,284 - OKGIIK_00575 0.48 -2.4
129,548 - OKGIIK_00575 0.88 +0.1
129,548 - OKGIIK_00575 0.88 -1.2
129,548 - OKGIIK_00575 0.88 -0.8
129,548 - OKGIIK_00575 0.88 -0.6
129,709 - OKGIIK_00580 0.26 -1.3
129,709 - OKGIIK_00580 0.26 -0.6
129,709 - OKGIIK_00580 0.26 -0.3
129,709 - OKGIIK_00580 0.26 -1.9
129,923 - -0.4
130,321 + OKGIIK_00585 0.34 +0.5
130,369 + OKGIIK_00585 0.38 -0.3
130,369 + OKGIIK_00585 0.38 -1.6
130,369 + OKGIIK_00585 0.38 -0.8
130,370 - OKGIIK_00585 0.38 -0.3
130,370 - OKGIIK_00585 0.38 +0.0
130,370 - OKGIIK_00585 0.38 +0.0
130,370 - OKGIIK_00585 0.38 -3.3
130,471 + OKGIIK_00585 0.47 +0.1
130,471 + OKGIIK_00585 0.47 -0.9
130,471 + OKGIIK_00585 0.47 +1.0
130,471 + OKGIIK_00585 0.47 -0.7
130,471 + OKGIIK_00585 0.47 -0.3
130,471 + OKGIIK_00585 0.47 +1.3
130,471 + OKGIIK_00585 0.47 -0.6
130,472 - OKGIIK_00585 0.47 -0.6
130,472 - OKGIIK_00585 0.47 +0.0
130,472 - OKGIIK_00585 0.47 -0.2
130,472 - OKGIIK_00585 0.47 -0.7
130,472 - OKGIIK_00585 0.47 +0.0
130,472 - OKGIIK_00585 0.47 +0.0
130,472 - OKGIIK_00585 0.47 -2.5
130,472 - OKGIIK_00585 0.47 +0.2
130,472 - OKGIIK_00585 0.47 +1.0
130,472 - OKGIIK_00585 0.47 +0.4
130,472 - OKGIIK_00585 0.47 -0.7
130,501 + OKGIIK_00585 0.50 +1.0
130,502 - OKGIIK_00585 0.50 -0.6
130,502 - OKGIIK_00585 0.50 -0.2
130,502 - OKGIIK_00585 0.50 +0.4
130,510 + OKGIIK_00585 0.50 -1.8
130,510 + OKGIIK_00585 0.50 +1.0
130,510 + OKGIIK_00585 0.50 -0.6
130,511 - OKGIIK_00585 0.50 -2.2
130,511 - OKGIIK_00585 0.50 -0.3
130,511 - OKGIIK_00585 0.50 +0.5
130,511 - OKGIIK_00585 0.50 +1.3
130,550 - OKGIIK_00585 0.54 +0.6
130,550 - OKGIIK_00585 0.54 +0.9
130,550 - OKGIIK_00585 0.54 +0.3

Or see this region's nucleotide sequence