Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00530

Experiment: R2A_PIPES with Cadmium chloride 128 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00520 and OKGIIK_00525 are separated by 5 nucleotidesOKGIIK_00525 and OKGIIK_00530 overlap by 4 nucleotidesOKGIIK_00530 and OKGIIK_00535 overlap by 4 nucleotides OKGIIK_00520: OKGIIK_00520 - phage tail protein, at 118,337 to 118,864 _00520 OKGIIK_00525: OKGIIK_00525 - PEROXIDASE-4 domain-containing protein, at 118,870 to 119,607 _00525 OKGIIK_00530: OKGIIK_00530 - hypothetical protein, at 119,604 to 120,368 _00530 OKGIIK_00535: OKGIIK_00535 - Pvc16-N domain-containing protein, at 120,365 to 121,606 _00535 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.698 kb on - strand, within OKGIIK_00520at 118.727 kb on + strand, within OKGIIK_00520at 118.728 kb on - strand, within OKGIIK_00520at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 119.333 kb on + strand, within OKGIIK_00525at 119.333 kb on + strand, within OKGIIK_00525at 119.334 kb on - strand, within OKGIIK_00525at 119.335 kb on - strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.531 kb on - strand, within OKGIIK_00525at 119.531 kb on - strand, within OKGIIK_00525at 119.585 kb on - strandat 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.263 kb on - strand, within OKGIIK_00530at 120.263 kb on - strand, within OKGIIK_00530at 120.333 kb on + strandat 120.334 kb on - strandat 120.531 kb on - strand, within OKGIIK_00535at 120.630 kb on - strand, within OKGIIK_00535at 120.860 kb on + strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 120.861 kb on - strand, within OKGIIK_00535at 121.011 kb on - strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.226 kb on + strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.227 kb on - strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535at 121.229 kb on - strand, within OKGIIK_00535

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 128 uM
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118,667 + OKGIIK_00520 0.62 +0.6
118,667 + OKGIIK_00520 0.62 +0.0
118,667 + OKGIIK_00520 0.62 -1.6
118,667 + OKGIIK_00520 0.62 +0.7
118,667 + OKGIIK_00520 0.62 -0.6
118,667 + OKGIIK_00520 0.62 -0.1
118,667 + OKGIIK_00520 0.62 -0.8
118,667 + OKGIIK_00520 0.62 -0.3
118,667 + OKGIIK_00520 0.62 +1.3
118,698 - OKGIIK_00520 0.68 +0.7
118,727 + OKGIIK_00520 0.74 -1.5
118,728 - OKGIIK_00520 0.74 -1.3
118,975 + OKGIIK_00525 0.14 -0.5
118,975 + OKGIIK_00525 0.14 +2.3
118,976 - OKGIIK_00525 0.14 +0.8
119,333 + OKGIIK_00525 0.63 +0.6
119,333 + OKGIIK_00525 0.63 +1.3
119,334 - OKGIIK_00525 0.63 -0.6
119,335 - OKGIIK_00525 0.63 +1.7
119,338 + OKGIIK_00525 0.63 -2.2
119,338 + OKGIIK_00525 0.63 -0.1
119,339 - OKGIIK_00525 0.64 -0.3
119,339 - OKGIIK_00525 0.64 +0.2
119,524 + OKGIIK_00525 0.89 +0.0
119,524 + OKGIIK_00525 0.89 +0.0
119,524 + OKGIIK_00525 0.89 +1.3
119,524 + OKGIIK_00525 0.89 -0.2
119,524 + OKGIIK_00525 0.89 +0.7
119,525 - OKGIIK_00525 0.89 -0.3
119,531 - OKGIIK_00525 0.90 -1.5
119,531 - OKGIIK_00525 0.90 -0.2
119,585 - -0.6
120,262 + OKGIIK_00530 0.86 -0.8
120,262 + OKGIIK_00530 0.86 -2.2
120,262 + OKGIIK_00530 0.86 -1.2
120,262 + OKGIIK_00530 0.86 -0.2
120,262 + OKGIIK_00530 0.86 +0.3
120,263 - OKGIIK_00530 0.86 -0.6
120,263 - OKGIIK_00530 0.86 -0.8
120,333 + +1.3
120,334 - +0.5
120,531 - OKGIIK_00535 0.13 -1.5
120,630 - OKGIIK_00535 0.21 -2.1
120,860 + OKGIIK_00535 0.40 +0.4
120,861 - OKGIIK_00535 0.40 +0.0
120,861 - OKGIIK_00535 0.40 -0.5
120,861 - OKGIIK_00535 0.40 +1.0
120,861 - OKGIIK_00535 0.40 -0.8
121,011 - OKGIIK_00535 0.52 -0.3
121,226 + OKGIIK_00535 0.69 +0.4
121,226 + OKGIIK_00535 0.69 -0.2
121,226 + OKGIIK_00535 0.69 -0.2
121,226 + OKGIIK_00535 0.69 -1.5
121,226 + OKGIIK_00535 0.69 -1.5
121,226 + OKGIIK_00535 0.69 +2.2
121,226 + OKGIIK_00535 0.69 +0.7
121,226 + OKGIIK_00535 0.69 -0.8
121,226 + OKGIIK_00535 0.69 -0.8
121,226 + OKGIIK_00535 0.69 -0.3
121,226 + OKGIIK_00535 0.69 +1.0
121,226 + OKGIIK_00535 0.69 -0.2
121,226 + OKGIIK_00535 0.69 +1.6
121,227 - OKGIIK_00535 0.69 +0.5
121,227 - OKGIIK_00535 0.69 -0.7
121,227 - OKGIIK_00535 0.69 -0.6
121,227 - OKGIIK_00535 0.69 -1.2
121,227 - OKGIIK_00535 0.69 -0.5
121,227 - OKGIIK_00535 0.69 +0.9
121,227 - OKGIIK_00535 0.69 -0.3
121,227 - OKGIIK_00535 0.69 +0.4
121,227 - OKGIIK_00535 0.69 +0.0
121,227 - OKGIIK_00535 0.69 +0.6
121,229 - OKGIIK_00535 0.70 -0.6
121,229 - OKGIIK_00535 0.70 -0.3
121,229 - OKGIIK_00535 0.70 +0.1

Or see this region's nucleotide sequence