Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF544 and GFF545 overlap by 4 nucleotides GFF545 and GFF546 are separated by 3 nucleotides
GFF544 - GDP-6-deoxy-D-mannose reductase, at 605,079 to 605,993
GFF544
GFF545 - GDP-mannose 4,6-dehydratase, at 605,990 to 606,961
GFF545
GFF546 - Alginate biosynthesis protein AlgA, at 606,965 to 608,407
GFF546
Position (kb) 605
606
607 Strain fitness (log2 ratio) -1
0
1
2 at 605.190 kb on + strand, within GFF544 at 605.190 kb on + strand, within GFF544 at 605.198 kb on + strand, within GFF544 at 605.382 kb on + strand, within GFF544 at 605.382 kb on + strand, within GFF544 at 605.383 kb on - strand, within GFF544 at 605.673 kb on - strand, within GFF544 at 605.712 kb on + strand, within GFF544 at 605.712 kb on + strand, within GFF544 at 605.712 kb on + strand, within GFF544 at 605.713 kb on - strand, within GFF544 at 605.713 kb on - strand, within GFF544 at 605.751 kb on + strand, within GFF544 at 605.751 kb on + strand, within GFF544 at 605.751 kb on + strand, within GFF544 at 605.752 kb on - strand, within GFF544 at 605.752 kb on - strand, within GFF544 at 605.827 kb on + strand, within GFF544 at 605.828 kb on - strand, within GFF544 at 606.038 kb on + strand at 606.038 kb on + strand at 606.038 kb on + strand at 606.039 kb on - strand at 606.069 kb on - strand at 606.186 kb on + strand, within GFF545 at 606.187 kb on - strand, within GFF545 at 606.224 kb on + strand, within GFF545 at 606.224 kb on + strand, within GFF545 at 606.224 kb on + strand, within GFF545 at 606.224 kb on + strand, within GFF545 at 606.224 kb on + strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.225 kb on - strand, within GFF545 at 606.455 kb on + strand, within GFF545 at 606.455 kb on + strand, within GFF545 at 606.455 kb on + strand, within GFF545 at 606.665 kb on + strand, within GFF545 at 606.666 kb on - strand, within GFF545 at 606.784 kb on + strand, within GFF545 at 606.785 kb on - strand, within GFF545 at 606.788 kb on + strand, within GFF545 at 606.788 kb on + strand, within GFF545 at 606.797 kb on + strand, within GFF545 at 606.797 kb on + strand, within GFF545 at 606.876 kb on + strand at 606.877 kb on - strand at 606.907 kb on + strand at 606.959 kb on + strand at 606.959 kb on + strand at 606.959 kb on + strand at 607.085 kb on + strand at 607.085 kb on + strand at 607.086 kb on - strand at 607.086 kb on - strand at 607.086 kb on - strand at 607.086 kb on - strand at 607.086 kb on - strand at 607.148 kb on + strand, within GFF546 at 607.151 kb on + strand, within GFF546 at 607.151 kb on + strand, within GFF546 at 607.152 kb on - strand, within GFF546 at 607.152 kb on - strand, within GFF546 at 607.173 kb on - strand, within GFF546 at 607.389 kb on - strand, within GFF546 at 607.439 kb on + strand, within GFF546 at 607.439 kb on + strand, within GFF546 at 607.440 kb on - strand, within GFF546 at 607.440 kb on - strand, within GFF546 at 607.529 kb on + strand, within GFF546 at 607.530 kb on - strand, within GFF546 at 607.740 kb on - strand, within GFF546 at 607.776 kb on + strand, within GFF546 at 607.776 kb on + strand, within GFF546 at 607.776 kb on + strand, within GFF546 at 607.777 kb on - strand, within GFF546 at 607.777 kb on - strand, within GFF546
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 605,190 + GFF544 0.12 +0.3 605,190 + GFF544 0.12 +0.0 605,198 + GFF544 0.13 -1.5 605,382 + GFF544 0.33 -0.1 605,382 + GFF544 0.33 -0.7 605,383 - GFF544 0.33 -1.0 605,673 - GFF544 0.65 -1.3 605,712 + GFF544 0.69 +0.2 605,712 + GFF544 0.69 -0.1 605,712 + GFF544 0.69 -0.4 605,713 - GFF544 0.69 +0.7 605,713 - GFF544 0.69 -0.0 605,751 + GFF544 0.73 +0.6 605,751 + GFF544 0.73 +0.3 605,751 + GFF544 0.73 -0.0 605,752 - GFF544 0.74 +1.1 605,752 - GFF544 0.74 +0.3 605,827 + GFF544 0.82 +0.4 605,828 - GFF544 0.82 -0.8 606,038 + -1.0 606,038 + +0.3 606,038 + -0.4 606,039 - -1.5 606,069 - -0.4 606,186 + GFF545 0.20 -1.0 606,187 - GFF545 0.20 -0.3 606,224 + GFF545 0.24 +0.2 606,224 + GFF545 0.24 +0.1 606,224 + GFF545 0.24 -0.7 606,224 + GFF545 0.24 +0.1 606,224 + GFF545 0.24 -0.0 606,225 - GFF545 0.24 +1.0 606,225 - GFF545 0.24 -1.6 606,225 - GFF545 0.24 -1.0 606,225 - GFF545 0.24 -0.7 606,225 - GFF545 0.24 -0.7 606,225 - GFF545 0.24 +1.8 606,225 - GFF545 0.24 +0.3 606,455 + GFF545 0.48 -0.1 606,455 + GFF545 0.48 -0.8 606,455 + GFF545 0.48 -0.4 606,665 + GFF545 0.69 -1.3 606,666 - GFF545 0.70 -1.1 606,784 + GFF545 0.82 -1.1 606,785 - GFF545 0.82 -1.0 606,788 + GFF545 0.82 +0.3 606,788 + GFF545 0.82 +0.4 606,797 + GFF545 0.83 +0.2 606,797 + GFF545 0.83 +0.1 606,876 + +0.5 606,877 - -0.2 606,907 + +0.2 606,959 + +0.7 606,959 + +0.0 606,959 + +0.3 607,085 + +0.5 607,085 + +1.2 607,086 - -1.1 607,086 - -0.1 607,086 - +0.6 607,086 - +0.9 607,086 - -0.8 607,148 + GFF546 0.13 +0.9 607,151 + GFF546 0.13 -1.1 607,151 + GFF546 0.13 -1.5 607,152 - GFF546 0.13 +0.4 607,152 - GFF546 0.13 -0.3 607,173 - GFF546 0.14 +0.6 607,389 - GFF546 0.29 -0.8 607,439 + GFF546 0.33 +0.2 607,439 + GFF546 0.33 -0.5 607,440 - GFF546 0.33 -0.4 607,440 - GFF546 0.33 +0.2 607,529 + GFF546 0.39 +1.6 607,530 - GFF546 0.39 -0.4 607,740 - GFF546 0.54 +0.1 607,776 + GFF546 0.56 -0.1 607,776 + GFF546 0.56 -1.4 607,776 + GFF546 0.56 +0.5 607,777 - GFF546 0.56 -0.2 607,777 - GFF546 0.56 -1.0
Or see this region's nucleotide sequence