Strain Fitness in Pseudomonas sp. DMC3 around GFF4811

Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4810 and GFF4811 are separated by 1 nucleotidesGFF4811 and GFF4812 overlap by 4 nucleotides GFF4810 - Vitamin B12 transporter BtuB, at 72,528 to 74,651 GFF4810 GFF4811 - hypothetical protein, at 74,653 to 75,585 GFF4811 GFF4812 - Sensor histidine kinase RcsC, at 75,582 to 77,486 GFF4812 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1at 73.755 kb on + strand, within GFF4810at 73.756 kb on - strand, within GFF4810at 73.756 kb on - strand, within GFF4810at 73.762 kb on - strand, within GFF4810at 73.785 kb on + strand, within GFF4810at 73.935 kb on + strand, within GFF4810at 73.936 kb on - strand, within GFF4810at 73.936 kb on - strand, within GFF4810at 73.936 kb on - strand, within GFF4810at 73.936 kb on - strand, within GFF4810at 74.025 kb on + strand, within GFF4810at 74.025 kb on + strand, within GFF4810at 74.055 kb on + strand, within GFF4810at 74.055 kb on + strand, within GFF4810at 74.143 kb on - strand, within GFF4810at 74.143 kb on - strand, within GFF4810at 74.143 kb on - strand, within GFF4810at 74.152 kb on - strand, within GFF4810at 74.193 kb on + strand, within GFF4810at 74.194 kb on - strand, within GFF4810at 74.194 kb on - strand, within GFF4810at 74.241 kb on + strand, within GFF4810at 74.241 kb on + strand, within GFF4810at 74.241 kb on + strand, within GFF4810at 74.241 kb on + strand, within GFF4810at 74.242 kb on - strand, within GFF4810at 74.242 kb on - strand, within GFF4810at 74.242 kb on - strand, within GFF4810at 74.334 kb on + strand, within GFF4810at 74.334 kb on + strand, within GFF4810at 74.334 kb on + strand, within GFF4810at 74.335 kb on - strand, within GFF4810at 74.451 kb on + strandat 74.451 kb on + strandat 74.451 kb on + strandat 74.451 kb on + strandat 74.451 kb on + strandat 74.452 kb on - strandat 74.585 kb on + strandat 74.586 kb on - strandat 74.600 kb on + strandat 74.601 kb on - strandat 74.604 kb on + strandat 74.604 kb on + strandat 74.604 kb on + strandat 74.604 kb on + strandat 74.605 kb on - strandat 74.625 kb on + strandat 74.625 kb on + strandat 74.625 kb on + strandat 74.625 kb on + strandat 74.625 kb on + strandat 74.625 kb on + strandat 74.626 kb on - strandat 74.626 kb on - strandat 74.626 kb on - strandat 74.626 kb on - strandat 74.626 kb on - strandat 74.626 kb on - strandat 74.649 kb on + strandat 74.649 kb on + strandat 74.650 kb on - strandat 74.650 kb on - strandat 75.283 kb on + strand, within GFF4811at 75.283 kb on + strand, within GFF4811at 75.283 kb on + strand, within GFF4811at 75.284 kb on - strand, within GFF4811at 75.284 kb on - strand, within GFF4811at 75.284 kb on - strand, within GFF4811at 75.322 kb on + strand, within GFF4811at 75.322 kb on + strand, within GFF4811at 75.322 kb on + strand, within GFF4811at 75.323 kb on - strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.391 kb on + strand, within GFF4811at 75.392 kb on - strand, within GFF4811at 75.392 kb on - strand, within GFF4811at 75.392 kb on - strand, within GFF4811at 75.392 kb on - strand, within GFF4811at 75.495 kb on + strandat 75.495 kb on + strandat 75.496 kb on - strandat 75.496 kb on - strandat 75.496 kb on - strandat 75.496 kb on - strandat 75.496 kb on - strandat 75.519 kb on - strandat 75.677 kb on + strandat 75.876 kb on + strand, within GFF4812at 75.877 kb on - strand, within GFF4812at 76.017 kb on + strand, within GFF4812at 76.017 kb on + strand, within GFF4812at 76.017 kb on + strand, within GFF4812at 76.018 kb on - strand, within GFF4812at 76.018 kb on - strand, within GFF4812at 76.212 kb on + strand, within GFF4812at 76.274 kb on + strand, within GFF4812at 76.485 kb on + strand, within GFF4812at 76.485 kb on + strand, within GFF4812at 76.486 kb on - strand, within GFF4812

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
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73,755 + GFF4810 0.58 -0.5
73,756 - GFF4810 0.58 +0.7
73,756 - GFF4810 0.58 +1.1
73,762 - GFF4810 0.58 +1.2
73,785 + GFF4810 0.59 +0.1
73,935 + GFF4810 0.66 -0.3
73,936 - GFF4810 0.66 +1.3
73,936 - GFF4810 0.66 +1.1
73,936 - GFF4810 0.66 +0.1
73,936 - GFF4810 0.66 +0.9
74,025 + GFF4810 0.70 +0.2
74,025 + GFF4810 0.70 +0.6
74,055 + GFF4810 0.72 +0.8
74,055 + GFF4810 0.72 -1.2
74,143 - GFF4810 0.76 -0.3
74,143 - GFF4810 0.76 -0.0
74,143 - GFF4810 0.76 -0.1
74,152 - GFF4810 0.76 -0.1
74,193 + GFF4810 0.78 +1.5
74,194 - GFF4810 0.78 -0.0
74,194 - GFF4810 0.78 +0.4
74,241 + GFF4810 0.81 -0.6
74,241 + GFF4810 0.81 -0.4
74,241 + GFF4810 0.81 +0.1
74,241 + GFF4810 0.81 +0.8
74,242 - GFF4810 0.81 +0.3
74,242 - GFF4810 0.81 -1.5
74,242 - GFF4810 0.81 -0.3
74,334 + GFF4810 0.85 -0.7
74,334 + GFF4810 0.85 +0.0
74,334 + GFF4810 0.85 -0.8
74,335 - GFF4810 0.85 -0.0
74,451 + -0.6
74,451 + +0.2
74,451 + -0.6
74,451 + +0.6
74,451 + +0.1
74,452 - -0.9
74,585 + +0.4
74,586 - +0.4
74,600 + -1.0
74,601 - +0.0
74,604 + -0.3
74,604 + +0.5
74,604 + +0.2
74,604 + +0.3
74,605 - +0.5
74,625 + -0.1
74,625 + -1.1
74,625 + -0.7
74,625 + -0.7
74,625 + +0.3
74,625 + +1.3
74,626 - -0.8
74,626 - +0.7
74,626 - +0.8
74,626 - +0.8
74,626 - -0.5
74,626 - +0.7
74,649 + -0.5
74,649 + -0.5
74,650 - +0.9
74,650 - -2.1
75,283 + GFF4811 0.68 -1.1
75,283 + GFF4811 0.68 +0.2
75,283 + GFF4811 0.68 +0.3
75,284 - GFF4811 0.68 +0.9
75,284 - GFF4811 0.68 -0.1
75,284 - GFF4811 0.68 -0.4
75,322 + GFF4811 0.72 +0.2
75,322 + GFF4811 0.72 -0.7
75,322 + GFF4811 0.72 +0.1
75,323 - GFF4811 0.72 -1.0
75,391 + GFF4811 0.79 -1.1
75,391 + GFF4811 0.79 +0.7
75,391 + GFF4811 0.79 -1.7
75,391 + GFF4811 0.79 -0.3
75,391 + GFF4811 0.79 +0.0
75,391 + GFF4811 0.79 -0.2
75,391 + GFF4811 0.79 +0.2
75,392 - GFF4811 0.79 +0.5
75,392 - GFF4811 0.79 +0.6
75,392 - GFF4811 0.79 +0.2
75,392 - GFF4811 0.79 +1.0
75,495 + -1.1
75,495 + +1.0
75,496 - -1.1
75,496 - -1.0
75,496 - -0.7
75,496 - +1.2
75,496 - +0.1
75,519 - -0.6
75,677 + +0.2
75,876 + GFF4812 0.15 -0.0
75,877 - GFF4812 0.15 -0.1
76,017 + GFF4812 0.23 +0.2
76,017 + GFF4812 0.23 -0.2
76,017 + GFF4812 0.23 +0.2
76,018 - GFF4812 0.23 -0.2
76,018 - GFF4812 0.23 +0.5
76,212 + GFF4812 0.33 +0.5
76,274 + GFF4812 0.36 -2.5
76,485 + GFF4812 0.47 -0.2
76,485 + GFF4812 0.47 -0.6
76,486 - GFF4812 0.47 -0.7

Or see this region's nucleotide sequence