Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3590 and GFF3591 overlap by 8 nucleotides GFF3591 and GFF3592 are separated by 56 nucleotides GFF3592 and GFF3593 are separated by 40 nucleotides
GFF3589 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 178,354 to 178,692
GFF3589
GFF3590 - Protoheme IX farnesyltransferase, at 178,650 to 179,675
GFF3590
GFF3591 - hypothetical protein, at 179,668 to 179,928
GFF3591
GFF3592 - hypothetical protein, at 179,985 to 180,227
GFF3592
GFF3593 - hypothetical protein, at 180,268 to 181,443
GFF3593
Position (kb) 179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 178.780 kb on - strand, within GFF3590 at 178.780 kb on - strand, within GFF3590 at 178.822 kb on + strand, within GFF3590 at 178.822 kb on + strand, within GFF3590 at 178.823 kb on - strand, within GFF3590 at 178.971 kb on + strand, within GFF3590 at 178.972 kb on - strand, within GFF3590 at 179.078 kb on + strand, within GFF3590 at 179.079 kb on - strand, within GFF3590 at 179.079 kb on - strand, within GFF3590 at 179.079 kb on - strand, within GFF3590 at 179.079 kb on - strand, within GFF3590 at 179.328 kb on + strand, within GFF3590 at 179.328 kb on + strand, within GFF3590 at 179.328 kb on + strand, within GFF3590 at 179.328 kb on + strand, within GFF3590 at 179.328 kb on + strand, within GFF3590 at 179.328 kb on + strand, within GFF3590 at 179.329 kb on - strand, within GFF3590 at 179.329 kb on - strand, within GFF3590 at 179.329 kb on - strand, within GFF3590 at 179.404 kb on + strand, within GFF3590 at 179.404 kb on + strand, within GFF3590 at 179.405 kb on - strand, within GFF3590 at 179.568 kb on + strand, within GFF3590 at 179.963 kb on + strand at 179.964 kb on - strand at 180.137 kb on - strand, within GFF3592 at 180.137 kb on - strand, within GFF3592 at 180.221 kb on + strand at 180.221 kb on + strand at 180.222 kb on - strand at 180.323 kb on - strand at 180.430 kb on + strand, within GFF3593 at 180.430 kb on + strand, within GFF3593 at 180.672 kb on + strand, within GFF3593 at 180.672 kb on + strand, within GFF3593 at 180.675 kb on - strand, within GFF3593 at 180.675 kb on - strand, within GFF3593 at 180.751 kb on + strand, within GFF3593 at 180.752 kb on - strand, within GFF3593 at 180.752 kb on - strand, within GFF3593
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 178,780 - GFF3590 0.13 +0.9 178,780 - GFF3590 0.13 +1.2 178,822 + GFF3590 0.17 -0.9 178,822 + GFF3590 0.17 -0.8 178,823 - GFF3590 0.17 -0.9 178,971 + GFF3590 0.31 +0.2 178,972 - GFF3590 0.31 +0.3 179,078 + GFF3590 0.42 +1.0 179,079 - GFF3590 0.42 -0.5 179,079 - GFF3590 0.42 +1.4 179,079 - GFF3590 0.42 +0.1 179,079 - GFF3590 0.42 -0.1 179,328 + GFF3590 0.66 -2.3 179,328 + GFF3590 0.66 +0.1 179,328 + GFF3590 0.66 -1.1 179,328 + GFF3590 0.66 +0.5 179,328 + GFF3590 0.66 -0.9 179,328 + GFF3590 0.66 +0.3 179,329 - GFF3590 0.66 +0.1 179,329 - GFF3590 0.66 +0.6 179,329 - GFF3590 0.66 -0.1 179,404 + GFF3590 0.73 -1.5 179,404 + GFF3590 0.73 -0.9 179,405 - GFF3590 0.74 +0.4 179,568 + GFF3590 0.89 -0.8 179,963 + +0.5 179,964 - -0.5 180,137 - GFF3592 0.63 -0.3 180,137 - GFF3592 0.63 -0.3 180,221 + -0.9 180,221 + -0.0 180,222 - -0.5 180,323 - -0.8 180,430 + GFF3593 0.14 +0.0 180,430 + GFF3593 0.14 -0.2 180,672 + GFF3593 0.34 -0.1 180,672 + GFF3593 0.34 +1.2 180,675 - GFF3593 0.35 -0.1 180,675 - GFF3593 0.35 +1.2 180,751 + GFF3593 0.41 -0.8 180,752 - GFF3593 0.41 +0.4 180,752 - GFF3593 0.41 -0.1
Or see this region's nucleotide sequence