Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3472 and GFF3473 are separated by 1 nucleotides GFF3473 and GFF3474 are separated by 43 nucleotides
GFF3472 - hypothetical protein, at 32,771 to 33,901
GFF3472
GFF3473 - hypothetical protein, at 33,903 to 36,305
GFF3473
GFF3474 - hypothetical protein, at 36,349 to 37,659
GFF3474
Position (kb) 33
34
35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.143 kb on + strand, within GFF3472 at 33.163 kb on + strand, within GFF3472 at 33.176 kb on + strand, within GFF3472 at 33.176 kb on + strand, within GFF3472 at 33.177 kb on - strand, within GFF3472 at 33.177 kb on - strand, within GFF3472 at 33.192 kb on - strand, within GFF3472 at 33.192 kb on - strand, within GFF3472 at 33.192 kb on - strand, within GFF3472 at 33.275 kb on + strand, within GFF3472 at 33.287 kb on - strand, within GFF3472 at 33.287 kb on - strand, within GFF3472 at 33.315 kb on + strand, within GFF3472 at 33.315 kb on + strand, within GFF3472 at 33.521 kb on + strand, within GFF3472 at 33.602 kb on + strand, within GFF3472 at 33.602 kb on + strand, within GFF3472 at 33.603 kb on - strand, within GFF3472 at 33.603 kb on - strand, within GFF3472 at 33.603 kb on - strand, within GFF3472 at 33.641 kb on + strand, within GFF3472 at 33.641 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.725 kb on + strand, within GFF3472 at 33.726 kb on - strand, within GFF3472 at 33.885 kb on + strand at 33.885 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.902 kb on + strand at 33.903 kb on - strand at 33.903 kb on - strand at 33.903 kb on - strand at 33.903 kb on - strand at 33.903 kb on - strand at 33.903 kb on - strand at 33.906 kb on + strand at 33.906 kb on + strand at 33.906 kb on + strand at 33.907 kb on - strand at 33.907 kb on - strand at 33.907 kb on - strand at 33.907 kb on - strand at 33.907 kb on - strand at 33.936 kb on + strand at 33.936 kb on + strand at 33.937 kb on - strand at 33.937 kb on - strand at 33.938 kb on + strand at 33.938 kb on + strand at 33.939 kb on - strand at 33.939 kb on - strand at 33.939 kb on - strand at 34.131 kb on + strand at 34.132 kb on - strand at 34.132 kb on - strand at 34.132 kb on - strand at 34.231 kb on + strand, within GFF3473 at 34.232 kb on - strand, within GFF3473 at 34.560 kb on + strand, within GFF3473 at 34.561 kb on - strand, within GFF3473 at 34.561 kb on - strand, within GFF3473 at 34.580 kb on + strand, within GFF3473 at 34.581 kb on - strand, within GFF3473 at 34.754 kb on - strand, within GFF3473 at 34.915 kb on + strand, within GFF3473 at 34.915 kb on + strand, within GFF3473 at 34.915 kb on + strand, within GFF3473 at 34.915 kb on + strand, within GFF3473 at 34.916 kb on - strand, within GFF3473 at 34.916 kb on - strand, within GFF3473 at 34.916 kb on - strand, within GFF3473 at 34.916 kb on - strand, within GFF3473 at 35.025 kb on - strand, within GFF3473 at 35.025 kb on - strand, within GFF3473 at 35.025 kb on - strand, within GFF3473 at 35.115 kb on + strand, within GFF3473 at 35.116 kb on - strand, within GFF3473 at 35.116 kb on - strand, within GFF3473 at 35.325 kb on + strand, within GFF3473 at 35.325 kb on + strand, within GFF3473 at 35.325 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.327 kb on + strand, within GFF3473 at 35.328 kb on - strand, within GFF3473 at 35.328 kb on - strand, within GFF3473 at 35.328 kb on - strand, within GFF3473 at 35.328 kb on - strand, within GFF3473 at 35.328 kb on - strand, within GFF3473 at 35.328 kb on - strand, within GFF3473 at 35.452 kb on + strand, within GFF3473 at 35.577 kb on - strand, within GFF3473 at 35.631 kb on + strand, within GFF3473 at 35.631 kb on + strand, within GFF3473 at 35.926 kb on - strand, within GFF3473 at 36.407 kb on - strand at 36.409 kb on + strand at 36.409 kb on + strand at 36.410 kb on - strand at 36.443 kb on + strand at 36.443 kb on + strand at 36.443 kb on + strand at 36.467 kb on + strand at 36.467 kb on + strand at 36.467 kb on + strand at 36.467 kb on + strand at 36.467 kb on + strand at 36.468 kb on - strand at 36.593 kb on + strand, within GFF3474 at 36.593 kb on + strand, within GFF3474 at 36.593 kb on + strand, within GFF3474 at 36.593 kb on + strand, within GFF3474 at 36.594 kb on - strand, within GFF3474 at 36.594 kb on - strand, within GFF3474 at 36.594 kb on - strand, within GFF3474 at 36.594 kb on - strand, within GFF3474 at 36.595 kb on + strand, within GFF3474 at 36.596 kb on - strand, within GFF3474 at 36.596 kb on - strand, within GFF3474 at 36.703 kb on + strand, within GFF3474 at 36.754 kb on - strand, within GFF3474 at 36.783 kb on - strand, within GFF3474 at 36.910 kb on - strand, within GFF3474 at 37.023 kb on + strand, within GFF3474 at 37.082 kb on + strand, within GFF3474 at 37.082 kb on + strand, within GFF3474 at 37.082 kb on + strand, within GFF3474 at 37.082 kb on + strand, within GFF3474 at 37.082 kb on + strand, within GFF3474 at 37.082 kb on + strand, within GFF3474 at 37.152 kb on - strand, within GFF3474 at 37.152 kb on - strand, within GFF3474 at 37.152 kb on - strand, within GFF3474 at 37.152 kb on - strand, within GFF3474
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 33,143 + GFF3472 0.33 +0.9 33,163 + GFF3472 0.35 -0.4 33,176 + GFF3472 0.36 -0.8 33,176 + GFF3472 0.36 +0.7 33,177 - GFF3472 0.36 +0.5 33,177 - GFF3472 0.36 -0.2 33,192 - GFF3472 0.37 +0.1 33,192 - GFF3472 0.37 +0.8 33,192 - GFF3472 0.37 +0.1 33,275 + GFF3472 0.45 -0.9 33,287 - GFF3472 0.46 +1.3 33,287 - GFF3472 0.46 -0.5 33,315 + GFF3472 0.48 -0.0 33,315 + GFF3472 0.48 -0.4 33,521 + GFF3472 0.66 +0.4 33,602 + GFF3472 0.73 -0.4 33,602 + GFF3472 0.73 -0.2 33,603 - GFF3472 0.74 +0.4 33,603 - GFF3472 0.74 -0.2 33,603 - GFF3472 0.74 -0.1 33,641 + GFF3472 0.77 -0.8 33,641 + GFF3472 0.77 -0.4 33,725 + GFF3472 0.84 +1.8 33,725 + GFF3472 0.84 +0.3 33,725 + GFF3472 0.84 +0.5 33,725 + GFF3472 0.84 -0.7 33,725 + GFF3472 0.84 -0.4 33,725 + GFF3472 0.84 +1.4 33,725 + GFF3472 0.84 +0.4 33,725 + GFF3472 0.84 +1.4 33,726 - GFF3472 0.84 +0.6 33,885 + +0.6 33,885 + -1.4 33,902 + -1.0 33,902 + +0.7 33,902 + -0.0 33,902 + +0.3 33,902 + -0.6 33,902 + +0.1 33,902 + -0.1 33,902 + +0.4 33,902 + -1.6 33,902 + +0.3 33,902 + +0.3 33,903 - +1.9 33,903 - +0.2 33,903 - -0.6 33,903 - +0.4 33,903 - +0.1 33,903 - -0.6 33,906 + -0.1 33,906 + +0.5 33,906 + -0.0 33,907 - -1.2 33,907 - +1.1 33,907 - -0.8 33,907 - +0.2 33,907 - +0.4 33,936 + +0.2 33,936 + -0.1 33,937 - -1.0 33,937 - -0.6 33,938 + +0.9 33,938 + -0.7 33,939 - -1.4 33,939 - +0.1 33,939 - +0.3 34,131 + +0.2 34,132 - +0.1 34,132 - +0.7 34,132 - -0.9 34,231 + GFF3473 0.14 +0.4 34,232 - GFF3473 0.14 -0.3 34,560 + GFF3473 0.27 -0.6 34,561 - GFF3473 0.27 +1.6 34,561 - GFF3473 0.27 -0.0 34,580 + GFF3473 0.28 -1.5 34,581 - GFF3473 0.28 -0.4 34,754 - GFF3473 0.35 +0.8 34,915 + GFF3473 0.42 -0.0 34,915 + GFF3473 0.42 +0.1 34,915 + GFF3473 0.42 -1.3 34,915 + GFF3473 0.42 -0.6 34,916 - GFF3473 0.42 +0.3 34,916 - GFF3473 0.42 -0.1 34,916 - GFF3473 0.42 -0.2 34,916 - GFF3473 0.42 +0.7 35,025 - GFF3473 0.47 -0.6 35,025 - GFF3473 0.47 +1.1 35,025 - GFF3473 0.47 -0.6 35,115 + GFF3473 0.50 +0.1 35,116 - GFF3473 0.50 +0.5 35,116 - GFF3473 0.50 -0.2 35,325 + GFF3473 0.59 +1.1 35,325 + GFF3473 0.59 +1.6 35,325 + GFF3473 0.59 +0.5 35,327 + GFF3473 0.59 -0.3 35,327 + GFF3473 0.59 +0.1 35,327 + GFF3473 0.59 +0.5 35,327 + GFF3473 0.59 -0.0 35,327 + GFF3473 0.59 +0.3 35,327 + GFF3473 0.59 +0.3 35,327 + GFF3473 0.59 -0.5 35,327 + GFF3473 0.59 -0.4 35,327 + GFF3473 0.59 -0.4 35,327 + GFF3473 0.59 -0.2 35,327 + GFF3473 0.59 +0.1 35,327 + GFF3473 0.59 -1.2 35,327 + GFF3473 0.59 +1.3 35,327 + GFF3473 0.59 -0.2 35,328 - GFF3473 0.59 -0.1 35,328 - GFF3473 0.59 -1.4 35,328 - GFF3473 0.59 +0.1 35,328 - GFF3473 0.59 +0.3 35,328 - GFF3473 0.59 +0.8 35,328 - GFF3473 0.59 +0.7 35,452 + GFF3473 0.64 +0.3 35,577 - GFF3473 0.70 +0.5 35,631 + GFF3473 0.72 +0.4 35,631 + GFF3473 0.72 -0.7 35,926 - GFF3473 0.84 -1.4 36,407 - +0.6 36,409 + -0.1 36,409 + +1.1 36,410 - +0.2 36,443 + -0.3 36,443 + +1.4 36,443 + -1.3 36,467 + -0.3 36,467 + +0.6 36,467 + -0.0 36,467 + +0.6 36,467 + -0.0 36,468 - +0.1 36,593 + GFF3474 0.19 +0.2 36,593 + GFF3474 0.19 +1.0 36,593 + GFF3474 0.19 -0.7 36,593 + GFF3474 0.19 +0.2 36,594 - GFF3474 0.19 -0.0 36,594 - GFF3474 0.19 -0.1 36,594 - GFF3474 0.19 +0.9 36,594 - GFF3474 0.19 -0.3 36,595 + GFF3474 0.19 -0.6 36,596 - GFF3474 0.19 -0.2 36,596 - GFF3474 0.19 +0.2 36,703 + GFF3474 0.27 -2.1 36,754 - GFF3474 0.31 +0.3 36,783 - GFF3474 0.33 +0.1 36,910 - GFF3474 0.43 +0.7 37,023 + GFF3474 0.51 +0.1 37,082 + GFF3474 0.56 -0.2 37,082 + GFF3474 0.56 -0.1 37,082 + GFF3474 0.56 -0.8 37,082 + GFF3474 0.56 -0.6 37,082 + GFF3474 0.56 -0.2 37,082 + GFF3474 0.56 +1.8 37,152 - GFF3474 0.61 -0.2 37,152 - GFF3474 0.61 -0.7 37,152 - GFF3474 0.61 -0.9 37,152 - GFF3474 0.61 -0.7
Or see this region's nucleotide sequence