Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3200 and GFF3201 are separated by 166 nucleotides GFF3201 and GFF3202 are separated by 3 nucleotides
GFF3200 - hypothetical protein, at 167,770 to 169,308
GFF3200
GFF3201 - Motility protein A, at 169,475 to 170,326
GFF3201
GFF3202 - Motility protein B, at 170,330 to 171,370
GFF3202
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.562 kb on + strand, within GFF3200 at 168.671 kb on + strand, within GFF3200 at 168.671 kb on + strand, within GFF3200 at 168.824 kb on + strand, within GFF3200 at 168.824 kb on + strand, within GFF3200 at 169.354 kb on + strand at 169.380 kb on + strand at 169.380 kb on + strand at 169.381 kb on - strand at 169.381 kb on - strand at 169.381 kb on - strand at 169.382 kb on + strand at 169.382 kb on + strand at 169.382 kb on + strand at 169.383 kb on - strand at 169.408 kb on + strand at 169.408 kb on + strand at 169.409 kb on - strand at 169.409 kb on - strand at 169.436 kb on + strand at 169.437 kb on - strand at 169.455 kb on + strand at 169.455 kb on + strand at 169.456 kb on - strand at 169.463 kb on + strand at 169.463 kb on + strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.464 kb on - strand at 169.470 kb on + strand at 169.470 kb on + strand at 169.470 kb on + strand at 169.470 kb on + strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.471 kb on - strand at 169.474 kb on + strand at 169.474 kb on + strand at 169.475 kb on - strand at 169.475 kb on - strand at 169.475 kb on - strand at 169.475 kb on - strand at 169.504 kb on - strand at 169.527 kb on - strand at 169.628 kb on + strand, within GFF3201 at 169.628 kb on + strand, within GFF3201 at 169.628 kb on + strand, within GFF3201 at 169.695 kb on - strand, within GFF3201 at 169.809 kb on - strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.856 kb on + strand, within GFF3201 at 169.925 kb on + strand, within GFF3201 at 169.925 kb on + strand, within GFF3201 at 169.926 kb on - strand, within GFF3201 at 170.099 kb on - strand, within GFF3201 at 170.123 kb on + strand, within GFF3201 at 170.186 kb on + strand, within GFF3201 at 170.187 kb on - strand, within GFF3201 at 170.187 kb on - strand, within GFF3201 at 170.324 kb on + strand at 170.325 kb on - strand at 170.338 kb on + strand at 170.339 kb on - strand at 170.339 kb on - strand at 170.473 kb on + strand, within GFF3202 at 170.473 kb on + strand, within GFF3202 at 170.474 kb on - strand, within GFF3202 at 170.505 kb on - strand, within GFF3202 at 170.546 kb on + strand, within GFF3202 at 170.547 kb on - strand, within GFF3202 at 170.547 kb on - strand, within GFF3202 at 170.858 kb on + strand, within GFF3202 at 170.859 kb on - strand, within GFF3202 at 170.859 kb on - strand, within GFF3202 at 170.949 kb on - strand, within GFF3202 at 171.065 kb on + strand, within GFF3202
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 168,562 + GFF3200 0.51 -0.3 168,671 + GFF3200 0.59 -1.0 168,671 + GFF3200 0.59 -0.5 168,824 + GFF3200 0.68 -0.6 168,824 + GFF3200 0.68 -0.1 169,354 + +1.5 169,380 + +0.4 169,380 + -0.6 169,381 - -0.3 169,381 - -0.3 169,381 - +0.4 169,382 + -1.0 169,382 + -0.6 169,382 + -0.0 169,383 - +0.8 169,408 + +0.2 169,408 + -0.6 169,409 - -0.6 169,409 - +1.1 169,436 + +0.1 169,437 - +0.1 169,455 + +0.5 169,455 + -1.6 169,456 - +0.3 169,463 + -0.1 169,463 + -1.2 169,464 - -0.4 169,464 - -0.0 169,464 - +0.5 169,464 - -0.5 169,464 - +0.7 169,464 - -0.5 169,464 - +1.5 169,464 - -0.1 169,470 + -1.2 169,470 + -1.2 169,470 + -0.3 169,470 + +0.4 169,471 - -0.7 169,471 - -0.2 169,471 - +0.3 169,471 - -2.9 169,471 - +0.3 169,471 - +0.8 169,474 + +1.0 169,474 + -1.8 169,475 - +0.9 169,475 - -0.3 169,475 - +0.3 169,475 - -0.4 169,504 - +0.9 169,527 - -0.4 169,628 + GFF3201 0.18 +0.7 169,628 + GFF3201 0.18 -0.3 169,628 + GFF3201 0.18 -0.4 169,695 - GFF3201 0.26 +0.5 169,809 - GFF3201 0.39 -0.1 169,856 + GFF3201 0.45 +0.0 169,856 + GFF3201 0.45 -1.8 169,856 + GFF3201 0.45 -0.4 169,856 + GFF3201 0.45 +0.7 169,925 + GFF3201 0.53 -0.1 169,925 + GFF3201 0.53 +0.8 169,926 - GFF3201 0.53 -1.1 170,099 - GFF3201 0.73 -0.4 170,123 + GFF3201 0.76 +0.5 170,186 + GFF3201 0.83 -0.1 170,187 - GFF3201 0.84 -0.3 170,187 - GFF3201 0.84 +0.5 170,324 + +1.4 170,325 - +0.3 170,338 + -0.0 170,339 - -0.6 170,339 - -0.8 170,473 + GFF3202 0.14 -0.2 170,473 + GFF3202 0.14 -0.8 170,474 - GFF3202 0.14 +0.2 170,505 - GFF3202 0.17 -0.2 170,546 + GFF3202 0.21 -1.3 170,547 - GFF3202 0.21 +0.8 170,547 - GFF3202 0.21 -0.5 170,858 + GFF3202 0.51 +0.5 170,859 - GFF3202 0.51 +0.3 170,859 - GFF3202 0.51 +0.2 170,949 - GFF3202 0.59 +0.3 171,065 + GFF3202 0.71 +1.7
Or see this region's nucleotide sequence