Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3197 and GFF3198 are separated by 54 nucleotides GFF3198 and GFF3199 overlap by 1 nucleotides GFF3199 and GFF3200 are separated by 42 nucleotides
GFF3197 - Cyclic-di-GMP receptor FimW, at 164,219 to 165,979
GFF3197
GFF3198 - Phosphatidylserine decarboxylase proenzyme, at 166,034 to 166,894
GFF3198
GFF3199 - Thiosulfate sulfurtransferase, at 166,894 to 167,727
GFF3199
GFF3200 - hypothetical protein, at 167,770 to 169,308
GFF3200
Position (kb) 166
167
168 Strain fitness (log2 ratio) -1
0
1 at 166.930 kb on - strand at 166.930 kb on - strand at 167.009 kb on + strand, within GFF3199 at 167.009 kb on + strand, within GFF3199 at 167.010 kb on - strand, within GFF3199 at 167.010 kb on - strand, within GFF3199 at 167.207 kb on + strand, within GFF3199 at 167.271 kb on - strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.389 kb on + strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.390 kb on - strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.391 kb on + strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.392 kb on - strand, within GFF3199 at 167.393 kb on + strand, within GFF3199 at 167.393 kb on + strand, within GFF3199 at 167.393 kb on + strand, within GFF3199 at 167.393 kb on + strand, within GFF3199 at 167.393 kb on + strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.394 kb on - strand, within GFF3199 at 167.399 kb on + strand, within GFF3199 at 167.399 kb on + strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.400 kb on - strand, within GFF3199 at 167.469 kb on - strand, within GFF3199 at 167.469 kb on - strand, within GFF3199 at 167.469 kb on - strand, within GFF3199 at 167.469 kb on - strand, within GFF3199 at 167.477 kb on + strand, within GFF3199 at 167.477 kb on + strand, within GFF3199 at 167.478 kb on - strand, within GFF3199 at 167.478 kb on - strand, within GFF3199 at 167.761 kb on - strand at 167.787 kb on + strand at 167.788 kb on - strand at 167.839 kb on + strand at 167.840 kb on - strand at 167.840 kb on - strand at 167.840 kb on - strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.881 kb on + strand at 167.882 kb on - strand at 167.882 kb on - strand at 167.968 kb on + strand, within GFF3200 at 167.969 kb on - strand, within GFF3200 at 167.969 kb on - strand, within GFF3200 at 168.444 kb on - strand, within GFF3200 at 168.444 kb on - strand, within GFF3200 at 168.458 kb on + strand, within GFF3200 at 168.458 kb on + strand, within GFF3200 at 168.458 kb on + strand, within GFF3200 at 168.562 kb on + strand, within GFF3200 at 168.671 kb on + strand, within GFF3200 at 168.671 kb on + strand, within GFF3200
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 166,930 - -0.5 166,930 - -0.3 167,009 + GFF3199 0.14 -0.5 167,009 + GFF3199 0.14 +0.4 167,010 - GFF3199 0.14 -0.3 167,010 - GFF3199 0.14 +0.4 167,207 + GFF3199 0.38 +1.5 167,271 - GFF3199 0.45 -0.1 167,389 + GFF3199 0.59 -0.0 167,389 + GFF3199 0.59 -1.5 167,389 + GFF3199 0.59 -0.0 167,389 + GFF3199 0.59 -0.7 167,389 + GFF3199 0.59 +0.4 167,389 + GFF3199 0.59 +1.1 167,389 + GFF3199 0.59 -0.1 167,389 + GFF3199 0.59 +0.1 167,390 - GFF3199 0.59 +0.3 167,390 - GFF3199 0.59 -0.0 167,390 - GFF3199 0.59 -0.5 167,390 - GFF3199 0.59 +0.5 167,390 - GFF3199 0.59 +0.0 167,390 - GFF3199 0.59 -0.9 167,390 - GFF3199 0.59 -0.6 167,390 - GFF3199 0.59 -1.2 167,390 - GFF3199 0.59 -0.3 167,390 - GFF3199 0.59 -0.5 167,391 + GFF3199 0.60 -0.5 167,391 + GFF3199 0.60 +0.5 167,391 + GFF3199 0.60 +0.3 167,391 + GFF3199 0.60 -1.5 167,391 + GFF3199 0.60 -0.8 167,391 + GFF3199 0.60 -1.6 167,391 + GFF3199 0.60 +0.8 167,392 - GFF3199 0.60 -0.3 167,392 - GFF3199 0.60 +0.1 167,392 - GFF3199 0.60 -0.7 167,392 - GFF3199 0.60 +0.6 167,392 - GFF3199 0.60 +0.0 167,392 - GFF3199 0.60 +0.2 167,392 - GFF3199 0.60 +0.3 167,392 - GFF3199 0.60 -0.7 167,392 - GFF3199 0.60 -1.2 167,393 + GFF3199 0.60 +0.7 167,393 + GFF3199 0.60 -0.5 167,393 + GFF3199 0.60 +0.5 167,393 + GFF3199 0.60 +1.1 167,393 + GFF3199 0.60 +0.5 167,394 - GFF3199 0.60 +1.0 167,394 - GFF3199 0.60 -0.2 167,394 - GFF3199 0.60 -0.3 167,394 - GFF3199 0.60 +0.7 167,394 - GFF3199 0.60 -0.3 167,394 - GFF3199 0.60 -0.5 167,394 - GFF3199 0.60 +0.1 167,394 - GFF3199 0.60 +1.0 167,394 - GFF3199 0.60 -0.7 167,399 + GFF3199 0.61 -0.0 167,399 + GFF3199 0.61 +0.3 167,400 - GFF3199 0.61 -0.3 167,400 - GFF3199 0.61 +0.1 167,400 - GFF3199 0.61 -0.6 167,400 - GFF3199 0.61 -0.2 167,400 - GFF3199 0.61 -0.2 167,400 - GFF3199 0.61 +0.3 167,400 - GFF3199 0.61 -0.8 167,400 - GFF3199 0.61 +1.0 167,469 - GFF3199 0.69 +0.5 167,469 - GFF3199 0.69 +0.2 167,469 - GFF3199 0.69 -0.0 167,469 - GFF3199 0.69 +1.1 167,477 + GFF3199 0.70 -0.5 167,477 + GFF3199 0.70 -0.5 167,478 - GFF3199 0.70 +0.8 167,478 - GFF3199 0.70 +0.8 167,761 - +0.3 167,787 + +0.3 167,788 - -0.2 167,839 + -0.3 167,840 - -0.6 167,840 - -1.1 167,840 - -0.9 167,881 + -0.5 167,881 + +1.4 167,881 + -0.3 167,881 + +0.3 167,881 + +0.4 167,881 + +1.0 167,881 + -0.4 167,881 + +1.0 167,882 - -0.4 167,882 - -0.5 167,968 + GFF3200 0.13 -0.5 167,969 - GFF3200 0.13 +0.1 167,969 - GFF3200 0.13 +0.3 168,444 - GFF3200 0.44 -0.2 168,444 - GFF3200 0.44 -0.2 168,458 + GFF3200 0.45 +0.4 168,458 + GFF3200 0.45 +0.9 168,458 + GFF3200 0.45 -0.8 168,562 + GFF3200 0.51 -0.3 168,671 + GFF3200 0.59 -1.0 168,671 + GFF3200 0.59 -0.5
Or see this region's nucleotide sequence