Strain Fitness in Pseudomonas sp. DMC3 around GFF302

Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF301 and GFF302 are separated by 270 nucleotidesGFF302 and GFF303 are separated by 156 nucleotides GFF301 - Amino-acid acetyltransferase, at 335,766 to 337,067 GFF301 GFF302 - Acetylornithine deacetylase, at 337,338 to 338,483 GFF302 GFF303 - hypothetical protein, at 338,640 to 340,010 GFF303 Position (kb) 337 338 339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 336.358 kb on + strand, within GFF301at 336.358 kb on + strand, within GFF301at 336.359 kb on - strand, within GFF301at 336.417 kb on + strand, within GFF301at 336.418 kb on - strand, within GFF301at 336.418 kb on - strand, within GFF301at 336.571 kb on - strand, within GFF301at 336.643 kb on + strand, within GFF301at 336.643 kb on + strand, within GFF301at 336.643 kb on + strand, within GFF301at 336.838 kb on + strand, within GFF301at 336.838 kb on + strand, within GFF301at 336.839 kb on - strand, within GFF301at 337.027 kb on + strandat 337.027 kb on + strandat 337.027 kb on + strandat 337.028 kb on - strandat 337.028 kb on - strandat 337.028 kb on - strandat 337.028 kb on - strandat 337.028 kb on - strandat 337.052 kb on + strandat 337.052 kb on + strandat 337.052 kb on + strandat 337.053 kb on - strandat 337.057 kb on + strandat 337.057 kb on + strandat 337.057 kb on + strandat 337.058 kb on - strandat 337.081 kb on + strandat 337.082 kb on - strandat 337.084 kb on + strandat 337.084 kb on + strandat 337.084 kb on + strandat 337.084 kb on + strandat 337.084 kb on + strandat 337.085 kb on - strandat 337.085 kb on - strandat 337.085 kb on - strandat 337.085 kb on - strandat 337.182 kb on + strandat 337.182 kb on + strandat 337.182 kb on + strandat 337.182 kb on + strandat 337.205 kb on + strandat 337.218 kb on + strandat 337.271 kb on - strandat 337.324 kb on + strandat 337.324 kb on + strandat 337.324 kb on + strandat 337.325 kb on - strandat 337.354 kb on + strandat 337.354 kb on + strandat 337.389 kb on - strandat 337.415 kb on - strandat 337.489 kb on + strand, within GFF302at 337.490 kb on - strand, within GFF302at 337.628 kb on + strand, within GFF302at 337.628 kb on + strand, within GFF302at 337.628 kb on + strand, within GFF302at 337.629 kb on - strand, within GFF302at 338.516 kb on - strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.517 kb on + strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.518 kb on - strandat 338.539 kb on + strandat 338.540 kb on - strandat 338.574 kb on + strandat 338.574 kb on + strandat 338.574 kb on + strandat 338.574 kb on + strandat 338.574 kb on + strandat 338.574 kb on + strandat 338.575 kb on - strandat 338.763 kb on + strandat 338.763 kb on + strandat 338.763 kb on + strandat 338.888 kb on + strand, within GFF303at 338.895 kb on + strand, within GFF303at 338.896 kb on - strand, within GFF303at 339.265 kb on - strand, within GFF303at 339.265 kb on - strand, within GFF303at 339.265 kb on - strand, within GFF303

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
remove
336,358 + GFF301 0.45 -1.3
336,358 + GFF301 0.45 -1.6
336,359 - GFF301 0.46 -2.6
336,417 + GFF301 0.50 -4.1
336,418 - GFF301 0.50 -1.6
336,418 - GFF301 0.50 -2.0
336,571 - GFF301 0.62 -2.4
336,643 + GFF301 0.67 -2.3
336,643 + GFF301 0.67 -0.7
336,643 + GFF301 0.67 -2.2
336,838 + GFF301 0.82 -3.4
336,838 + GFF301 0.82 -1.6
336,839 - GFF301 0.82 -2.2
337,027 + -1.0
337,027 + -0.9
337,027 + -0.6
337,028 - -3.7
337,028 - -3.2
337,028 - -1.9
337,028 - -2.5
337,028 - -1.7
337,052 + -2.7
337,052 + -2.2
337,052 + -2.6
337,053 - -2.7
337,057 + -2.3
337,057 + -1.3
337,057 + -1.6
337,058 - -0.7
337,081 + -1.2
337,082 - +0.4
337,084 + -0.6
337,084 + -2.7
337,084 + -1.6
337,084 + -3.2
337,084 + -0.4
337,085 - +0.2
337,085 - +0.3
337,085 - -0.5
337,085 - +0.6
337,182 + -0.3
337,182 + +0.0
337,182 + +0.7
337,182 + +0.6
337,205 + +0.1
337,218 + +0.4
337,271 - +1.2
337,324 + -0.7
337,324 + +0.2
337,324 + -0.9
337,325 - -0.9
337,354 + +1.2
337,354 + +0.2
337,389 - -0.6
337,415 - -0.8
337,489 + GFF302 0.13 +1.5
337,490 - GFF302 0.13 +0.0
337,628 + GFF302 0.25 -0.5
337,628 + GFF302 0.25 -0.3
337,628 + GFF302 0.25 +1.0
337,629 - GFF302 0.25 -0.6
338,516 - +0.6
338,517 + +0.0
338,517 + +0.1
338,517 + -1.1
338,517 + -1.1
338,517 + +0.7
338,517 + +1.1
338,517 + +0.3
338,517 + +0.6
338,517 + -0.0
338,517 + -0.3
338,517 + -0.6
338,517 + -0.1
338,517 + +0.4
338,518 - -0.1
338,518 - +0.3
338,518 - -0.6
338,518 - +0.0
338,518 - -0.1
338,518 - +0.8
338,518 - +0.5
338,518 - -0.3
338,518 - -0.7
338,539 + +0.3
338,540 - -0.7
338,574 + -1.6
338,574 + -0.2
338,574 + -0.2
338,574 + -0.2
338,574 + +0.4
338,574 + -1.0
338,575 - -1.1
338,763 + +0.4
338,763 + -0.7
338,763 + +0.2
338,888 + GFF303 0.18 -0.2
338,895 + GFF303 0.19 -0.3
338,896 - GFF303 0.19 -1.2
339,265 - GFF303 0.46 +0.0
339,265 - GFF303 0.46 -0.3
339,265 - GFF303 0.46 -0.1

Or see this region's nucleotide sequence