Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2623 and GFF2624 are separated by 660 nucleotides GFF2624 and GFF2625 are separated by 142 nucleotides GFF2625 and GFF2626 are separated by 74 nucleotides
GFF2623 - hypothetical protein, at 423,720 to 425,174
GFF2623
GFF2624 - hypothetical protein, at 425,835 to 427,880
GFF2624
GFF2625 - putative DNA endonuclease SmrA, at 428,023 to 428,580
GFF2625
GFF2626 - hypothetical protein, at 428,655 to 428,975
GFF2626
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -1
0
1
2 at 424.889 kb on - strand, within GFF2623 at 424.952 kb on - strand, within GFF2623 at 424.984 kb on - strand, within GFF2623 at 425.033 kb on + strand at 425.288 kb on - strand at 425.335 kb on + strand at 425.439 kb on + strand at 425.439 kb on + strand at 425.597 kb on - strand at 425.597 kb on - strand at 425.610 kb on + strand at 425.611 kb on - strand at 425.625 kb on + strand at 425.745 kb on + strand at 425.969 kb on + strand at 425.971 kb on + strand at 425.971 kb on + strand at 426.010 kb on + strand at 426.017 kb on - strand at 426.017 kb on - strand at 426.017 kb on - strand at 426.022 kb on + strand at 426.125 kb on + strand, within GFF2624 at 426.126 kb on - strand, within GFF2624 at 426.390 kb on - strand, within GFF2624 at 426.399 kb on + strand, within GFF2624 at 426.453 kb on + strand, within GFF2624 at 426.453 kb on + strand, within GFF2624 at 426.535 kb on - strand, within GFF2624 at 426.591 kb on - strand, within GFF2624 at 426.613 kb on + strand, within GFF2624 at 426.639 kb on - strand, within GFF2624 at 426.704 kb on - strand, within GFF2624 at 426.771 kb on - strand, within GFF2624 at 426.909 kb on + strand, within GFF2624 at 426.929 kb on + strand, within GFF2624 at 426.995 kb on - strand, within GFF2624 at 426.995 kb on - strand, within GFF2624 at 426.998 kb on + strand, within GFF2624 at 427.150 kb on - strand, within GFF2624 at 427.305 kb on - strand, within GFF2624 at 427.436 kb on + strand, within GFF2624 at 427.448 kb on + strand, within GFF2624 at 427.449 kb on - strand, within GFF2624 at 427.585 kb on + strand, within GFF2624 at 427.701 kb on + strand at 427.801 kb on + strand at 427.863 kb on - strand at 427.879 kb on - strand at 427.883 kb on - strand at 427.909 kb on + strand at 427.972 kb on - strand at 427.980 kb on - strand at 428.066 kb on + strand at 428.066 kb on + strand at 428.210 kb on - strand, within GFF2625 at 428.210 kb on - strand, within GFF2625
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 424,889 - GFF2623 0.80 +0.1 424,952 - GFF2623 0.85 +0.7 424,984 - GFF2623 0.87 +0.8 425,033 + -0.3 425,288 - -0.2 425,335 + -0.4 425,439 + -0.2 425,439 + +0.1 425,597 - -1.0 425,597 - -0.6 425,610 + +0.8 425,611 - -0.2 425,625 + +0.2 425,745 + -0.9 425,969 + -0.5 425,971 + -0.1 425,971 + -0.4 426,010 + -1.4 426,017 - +0.0 426,017 - -0.7 426,017 - +0.4 426,022 + -0.7 426,125 + GFF2624 0.14 -0.1 426,126 - GFF2624 0.14 +0.0 426,390 - GFF2624 0.27 +0.1 426,399 + GFF2624 0.28 +0.3 426,453 + GFF2624 0.30 +0.8 426,453 + GFF2624 0.30 +1.1 426,535 - GFF2624 0.34 +0.6 426,591 - GFF2624 0.37 -0.5 426,613 + GFF2624 0.38 +0.5 426,639 - GFF2624 0.39 +0.4 426,704 - GFF2624 0.42 +1.9 426,771 - GFF2624 0.46 +1.6 426,909 + GFF2624 0.52 +0.1 426,929 + GFF2624 0.53 +0.1 426,995 - GFF2624 0.57 +0.5 426,995 - GFF2624 0.57 -0.8 426,998 + GFF2624 0.57 -0.6 427,150 - GFF2624 0.64 +0.3 427,305 - GFF2624 0.72 +0.3 427,436 + GFF2624 0.78 +1.2 427,448 + GFF2624 0.79 +0.8 427,449 - GFF2624 0.79 -0.4 427,585 + GFF2624 0.86 -0.3 427,701 + -0.2 427,801 + -0.0 427,863 - +0.1 427,879 - +0.0 427,883 - +0.7 427,909 + +1.1 427,972 - -0.2 427,980 - -0.6 428,066 + +0.2 428,066 + +0.2 428,210 - GFF2625 0.34 -0.9 428,210 - GFF2625 0.34 +0.1
Or see this region's nucleotide sequence