Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02530

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02529 and OHPLBJKB_02530 are separated by 204 nucleotidesOHPLBJKB_02530 and OHPLBJKB_02531 are separated by 220 nucleotides OHPLBJKB_02529: OHPLBJKB_02529 - Blue light- and temperature-regulated antirepressor BluF, at 2,639,951 to 2,641,162 _02529 OHPLBJKB_02530: OHPLBJKB_02530 - HTH-type transcriptional repressor BluR, at 2,641,367 to 2,642,098 _02530 OHPLBJKB_02531: OHPLBJKB_02531 - putative protein YdfO, at 2,642,319 to 2,642,723 _02531 Position (kb) 2641 2642 2643Strain fitness (log2 ratio) -2 -1 0 1at 2640.406 kb on + strand, within OHPLBJKB_02529at 2640.457 kb on + strand, within OHPLBJKB_02529at 2640.457 kb on + strand, within OHPLBJKB_02529at 2640.457 kb on + strand, within OHPLBJKB_02529at 2640.459 kb on + strand, within OHPLBJKB_02529at 2640.485 kb on - strand, within OHPLBJKB_02529at 2640.548 kb on - strand, within OHPLBJKB_02529at 2640.614 kb on - strand, within OHPLBJKB_02529at 2640.659 kb on - strand, within OHPLBJKB_02529at 2640.681 kb on + strand, within OHPLBJKB_02529at 2640.686 kb on - strand, within OHPLBJKB_02529at 2640.686 kb on - strand, within OHPLBJKB_02529at 2640.723 kb on + strand, within OHPLBJKB_02529at 2640.735 kb on + strand, within OHPLBJKB_02529at 2640.735 kb on + strand, within OHPLBJKB_02529at 2640.826 kb on + strand, within OHPLBJKB_02529at 2640.835 kb on - strand, within OHPLBJKB_02529at 2640.959 kb on - strand, within OHPLBJKB_02529at 2640.982 kb on + strand, within OHPLBJKB_02529at 2640.997 kb on - strand, within OHPLBJKB_02529at 2641.006 kb on + strand, within OHPLBJKB_02529at 2641.007 kb on - strand, within OHPLBJKB_02529at 2641.117 kb on + strandat 2641.218 kb on + strandat 2641.218 kb on + strandat 2641.304 kb on - strandat 2641.331 kb on - strandat 2641.331 kb on - strandat 2641.373 kb on + strandat 2641.373 kb on + strandat 2641.411 kb on + strandat 2641.412 kb on - strandat 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.506 kb on + strand, within OHPLBJKB_02530at 2641.507 kb on - strand, within OHPLBJKB_02530at 2641.537 kb on - strand, within OHPLBJKB_02530at 2641.537 kb on - strand, within OHPLBJKB_02530at 2641.540 kb on + strand, within OHPLBJKB_02530at 2641.541 kb on - strand, within OHPLBJKB_02530at 2641.541 kb on - strand, within OHPLBJKB_02530at 2641.565 kb on - strand, within OHPLBJKB_02530at 2641.665 kb on + strand, within OHPLBJKB_02530at 2641.704 kb on + strand, within OHPLBJKB_02530at 2641.718 kb on - strand, within OHPLBJKB_02530at 2641.787 kb on - strand, within OHPLBJKB_02530at 2641.920 kb on + strand, within OHPLBJKB_02530at 2642.049 kb on + strandat 2642.073 kb on - strandat 2642.074 kb on + strandat 2642.075 kb on - strandat 2642.132 kb on + strandat 2642.132 kb on + strandat 2642.133 kb on - strandat 2642.135 kb on - strandat 2642.205 kb on - strandat 2642.213 kb on + strandat 2642.225 kb on + strandat 2642.226 kb on - strandat 2642.230 kb on - strandat 2642.230 kb on - strandat 2642.298 kb on + strandat 2642.299 kb on - strandat 2642.299 kb on - strandat 2642.309 kb on + strandat 2642.428 kb on - strand, within OHPLBJKB_02531at 2642.589 kb on + strand, within OHPLBJKB_02531at 2642.683 kb on + strandat 2642.736 kb on - strandat 2642.818 kb on - strandat 2643.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,640,406 + OHPLBJKB_02529 0.38 -0.6
2,640,457 + OHPLBJKB_02529 0.42 -0.8
2,640,457 + OHPLBJKB_02529 0.42 +0.2
2,640,457 + OHPLBJKB_02529 0.42 +0.3
2,640,459 + OHPLBJKB_02529 0.42 -1.0
2,640,485 - OHPLBJKB_02529 0.44 -0.3
2,640,548 - OHPLBJKB_02529 0.49 -0.0
2,640,614 - OHPLBJKB_02529 0.55 +0.1
2,640,659 - OHPLBJKB_02529 0.58 +0.5
2,640,681 + OHPLBJKB_02529 0.60 -0.9
2,640,686 - OHPLBJKB_02529 0.61 +0.4
2,640,686 - OHPLBJKB_02529 0.61 -0.4
2,640,723 + OHPLBJKB_02529 0.64 -0.4
2,640,735 + OHPLBJKB_02529 0.65 +0.3
2,640,735 + OHPLBJKB_02529 0.65 -0.4
2,640,826 + OHPLBJKB_02529 0.72 +0.3
2,640,835 - OHPLBJKB_02529 0.73 -0.7
2,640,959 - OHPLBJKB_02529 0.83 +1.0
2,640,982 + OHPLBJKB_02529 0.85 +1.2
2,640,997 - OHPLBJKB_02529 0.86 +0.9
2,641,006 + OHPLBJKB_02529 0.87 -0.1
2,641,007 - OHPLBJKB_02529 0.87 -0.3
2,641,117 + +0.7
2,641,218 + -0.5
2,641,218 + +0.2
2,641,304 - -0.8
2,641,331 - -1.3
2,641,331 - -1.2
2,641,373 + -0.6
2,641,373 + +1.1
2,641,411 + -0.7
2,641,412 - -2.7
2,641,506 + OHPLBJKB_02530 0.19 +0.0
2,641,506 + OHPLBJKB_02530 0.19 +0.7
2,641,506 + OHPLBJKB_02530 0.19 +0.9
2,641,506 + OHPLBJKB_02530 0.19 -0.9
2,641,507 - OHPLBJKB_02530 0.19 +0.5
2,641,537 - OHPLBJKB_02530 0.23 -1.0
2,641,537 - OHPLBJKB_02530 0.23 -0.1
2,641,540 + OHPLBJKB_02530 0.24 +0.6
2,641,541 - OHPLBJKB_02530 0.24 -0.4
2,641,541 - OHPLBJKB_02530 0.24 -0.3
2,641,565 - OHPLBJKB_02530 0.27 +1.0
2,641,665 + OHPLBJKB_02530 0.41 +0.0
2,641,704 + OHPLBJKB_02530 0.46 -0.5
2,641,718 - OHPLBJKB_02530 0.48 -0.1
2,641,787 - OHPLBJKB_02530 0.57 -0.1
2,641,920 + OHPLBJKB_02530 0.76 -0.8
2,642,049 + +0.2
2,642,073 - +0.8
2,642,074 + +0.1
2,642,075 - -0.8
2,642,132 + -0.6
2,642,132 + -1.3
2,642,133 - +0.2
2,642,135 - -1.0
2,642,205 - +1.4
2,642,213 + +0.8
2,642,225 + -0.4
2,642,226 - -0.3
2,642,230 - +0.2
2,642,230 - +1.2
2,642,298 + +0.2
2,642,299 - +1.4
2,642,299 - +0.1
2,642,309 + +0.9
2,642,428 - OHPLBJKB_02531 0.27 +0.2
2,642,589 + OHPLBJKB_02531 0.67 +1.5
2,642,683 + +0.1
2,642,736 - +0.2
2,642,818 - +0.0
2,643,013 - +0.9

Or see this region's nucleotide sequence