Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01407

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01405 and OHPLBJKB_01406 are separated by 57 nucleotidesOHPLBJKB_01406 and OHPLBJKB_01407 are separated by 32 nucleotidesOHPLBJKB_01407 and OHPLBJKB_01408 are separated by 231 nucleotides OHPLBJKB_01405: OHPLBJKB_01405 - Phosphodiesterase YfcE, at 1,449,270 to 1,449,821 _01405 OHPLBJKB_01406: OHPLBJKB_01406 - putative Nudix hydrolase YfcD, at 1,449,879 to 1,450,421 _01406 OHPLBJKB_01407: OHPLBJKB_01407 - hypothetical protein, at 1,450,454 to 1,451,932 _01407 OHPLBJKB_01408: OHPLBJKB_01408 - Phosphate acetyltransferase, at 1,452,164 to 1,454,308 _01408 Position (kb) 1450 1451 1452Strain fitness (log2 ratio) -2 -1 0 1at 1449.461 kb on + strand, within OHPLBJKB_01405at 1449.461 kb on + strand, within OHPLBJKB_01405at 1449.461 kb on + strand, within OHPLBJKB_01405at 1449.461 kb on + strand, within OHPLBJKB_01405at 1449.461 kb on + strand, within OHPLBJKB_01405at 1449.461 kb on + strand, within OHPLBJKB_01405at 1449.462 kb on - strand, within OHPLBJKB_01405at 1449.462 kb on - strand, within OHPLBJKB_01405at 1449.462 kb on - strand, within OHPLBJKB_01405at 1449.462 kb on - strand, within OHPLBJKB_01405at 1449.462 kb on - strand, within OHPLBJKB_01405at 1449.547 kb on + strand, within OHPLBJKB_01405at 1449.548 kb on - strand, within OHPLBJKB_01405at 1449.548 kb on - strand, within OHPLBJKB_01405at 1449.551 kb on - strand, within OHPLBJKB_01405at 1449.551 kb on - strand, within OHPLBJKB_01405at 1449.639 kb on + strand, within OHPLBJKB_01405at 1449.640 kb on - strand, within OHPLBJKB_01405at 1449.647 kb on + strand, within OHPLBJKB_01405at 1449.711 kb on - strand, within OHPLBJKB_01405at 1449.738 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.760 kb on + strand, within OHPLBJKB_01405at 1449.761 kb on - strand, within OHPLBJKB_01405at 1449.761 kb on - strand, within OHPLBJKB_01405at 1449.761 kb on - strand, within OHPLBJKB_01405at 1449.765 kb on - strand, within OHPLBJKB_01405at 1449.765 kb on - strand, within OHPLBJKB_01405at 1449.770 kb on - strandat 1449.791 kb on + strandat 1449.792 kb on - strandat 1449.847 kb on + strandat 1449.902 kb on + strandat 1449.903 kb on - strandat 1449.999 kb on + strand, within OHPLBJKB_01406at 1449.999 kb on + strand, within OHPLBJKB_01406at 1450.000 kb on - strand, within OHPLBJKB_01406at 1450.000 kb on - strand, within OHPLBJKB_01406at 1450.000 kb on - strand, within OHPLBJKB_01406at 1450.079 kb on - strand, within OHPLBJKB_01406at 1450.079 kb on - strand, within OHPLBJKB_01406at 1450.100 kb on - strand, within OHPLBJKB_01406at 1450.100 kb on - strand, within OHPLBJKB_01406at 1450.268 kb on - strand, within OHPLBJKB_01406at 1450.268 kb on - strand, within OHPLBJKB_01406at 1450.456 kb on - strandat 1450.487 kb on + strandat 1450.501 kb on + strandat 1450.501 kb on + strandat 1450.501 kb on + strandat 1450.501 kb on + strandat 1450.502 kb on - strandat 1450.505 kb on - strandat 1450.505 kb on - strandat 1450.505 kb on - strandat 1450.521 kb on - strandat 1450.766 kb on - strand, within OHPLBJKB_01407at 1450.766 kb on - strand, within OHPLBJKB_01407at 1450.828 kb on + strand, within OHPLBJKB_01407at 1450.829 kb on - strand, within OHPLBJKB_01407at 1450.832 kb on + strand, within OHPLBJKB_01407at 1450.833 kb on - strand, within OHPLBJKB_01407at 1450.954 kb on + strand, within OHPLBJKB_01407at 1450.955 kb on - strand, within OHPLBJKB_01407at 1450.955 kb on - strand, within OHPLBJKB_01407at 1450.955 kb on - strand, within OHPLBJKB_01407at 1451.128 kb on + strand, within OHPLBJKB_01407at 1451.227 kb on - strand, within OHPLBJKB_01407at 1451.383 kb on + strand, within OHPLBJKB_01407at 1451.384 kb on - strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.385 kb on + strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.386 kb on - strand, within OHPLBJKB_01407at 1451.404 kb on + strand, within OHPLBJKB_01407at 1451.408 kb on - strand, within OHPLBJKB_01407at 1451.408 kb on - strand, within OHPLBJKB_01407at 1451.416 kb on - strand, within OHPLBJKB_01407at 1451.447 kb on - strand, within OHPLBJKB_01407at 1451.509 kb on + strand, within OHPLBJKB_01407at 1451.590 kb on + strand, within OHPLBJKB_01407at 1451.629 kb on + strand, within OHPLBJKB_01407at 1451.629 kb on + strand, within OHPLBJKB_01407at 1451.629 kb on + strand, within OHPLBJKB_01407at 1451.630 kb on - strand, within OHPLBJKB_01407at 1451.746 kb on - strand, within OHPLBJKB_01407at 1451.833 kb on - strandat 1451.870 kb on + strandat 1451.911 kb on + strandat 1451.974 kb on + strandat 1451.974 kb on + strandat 1451.975 kb on - strandat 1451.984 kb on - strandat 1452.009 kb on - strandat 1452.053 kb on + strandat 1452.053 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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1,449,461 + OHPLBJKB_01405 0.35 -0.6
1,449,461 + OHPLBJKB_01405 0.35 -0.4
1,449,461 + OHPLBJKB_01405 0.35 +1.1
1,449,461 + OHPLBJKB_01405 0.35 -1.1
1,449,461 + OHPLBJKB_01405 0.35 -1.1
1,449,461 + OHPLBJKB_01405 0.35 -0.2
1,449,462 - OHPLBJKB_01405 0.35 +0.9
1,449,462 - OHPLBJKB_01405 0.35 -0.1
1,449,462 - OHPLBJKB_01405 0.35 +0.3
1,449,462 - OHPLBJKB_01405 0.35 +0.9
1,449,462 - OHPLBJKB_01405 0.35 -1.4
1,449,547 + OHPLBJKB_01405 0.50 -1.1
1,449,548 - OHPLBJKB_01405 0.50 -0.6
1,449,548 - OHPLBJKB_01405 0.50 -2.0
1,449,551 - OHPLBJKB_01405 0.51 -2.1
1,449,551 - OHPLBJKB_01405 0.51 -0.3
1,449,639 + OHPLBJKB_01405 0.67 -0.4
1,449,640 - OHPLBJKB_01405 0.67 -0.2
1,449,647 + OHPLBJKB_01405 0.68 -0.1
1,449,711 - OHPLBJKB_01405 0.80 -0.3
1,449,738 + OHPLBJKB_01405 0.85 -0.1
1,449,760 + OHPLBJKB_01405 0.89 +0.6
1,449,760 + OHPLBJKB_01405 0.89 -0.0
1,449,760 + OHPLBJKB_01405 0.89 +0.2
1,449,760 + OHPLBJKB_01405 0.89 +0.8
1,449,760 + OHPLBJKB_01405 0.89 +1.5
1,449,760 + OHPLBJKB_01405 0.89 +0.3
1,449,760 + OHPLBJKB_01405 0.89 -0.2
1,449,761 - OHPLBJKB_01405 0.89 -0.3
1,449,761 - OHPLBJKB_01405 0.89 -0.8
1,449,761 - OHPLBJKB_01405 0.89 +0.9
1,449,765 - OHPLBJKB_01405 0.90 +0.8
1,449,765 - OHPLBJKB_01405 0.90 +0.8
1,449,770 - -2.2
1,449,791 + -0.0
1,449,792 - +0.5
1,449,847 + -1.0
1,449,902 + +0.1
1,449,903 - -0.9
1,449,999 + OHPLBJKB_01406 0.22 +0.3
1,449,999 + OHPLBJKB_01406 0.22 +0.8
1,450,000 - OHPLBJKB_01406 0.22 +0.8
1,450,000 - OHPLBJKB_01406 0.22 +0.2
1,450,000 - OHPLBJKB_01406 0.22 +0.0
1,450,079 - OHPLBJKB_01406 0.37 -0.6
1,450,079 - OHPLBJKB_01406 0.37 +0.3
1,450,100 - OHPLBJKB_01406 0.41 -1.0
1,450,100 - OHPLBJKB_01406 0.41 -1.4
1,450,268 - OHPLBJKB_01406 0.72 -0.1
1,450,268 - OHPLBJKB_01406 0.72 -1.9
1,450,456 - -0.3
1,450,487 + -0.1
1,450,501 + +0.3
1,450,501 + -1.8
1,450,501 + +0.4
1,450,501 + -0.5
1,450,502 - +1.0
1,450,505 - -0.2
1,450,505 - +0.4
1,450,505 - -0.3
1,450,521 - -0.6
1,450,766 - OHPLBJKB_01407 0.21 +1.4
1,450,766 - OHPLBJKB_01407 0.21 -1.1
1,450,828 + OHPLBJKB_01407 0.25 -1.1
1,450,829 - OHPLBJKB_01407 0.25 -0.2
1,450,832 + OHPLBJKB_01407 0.26 +0.0
1,450,833 - OHPLBJKB_01407 0.26 +0.4
1,450,954 + OHPLBJKB_01407 0.34 -0.9
1,450,955 - OHPLBJKB_01407 0.34 -1.5
1,450,955 - OHPLBJKB_01407 0.34 -1.1
1,450,955 - OHPLBJKB_01407 0.34 -0.3
1,451,128 + OHPLBJKB_01407 0.46 -0.9
1,451,227 - OHPLBJKB_01407 0.52 -0.1
1,451,383 + OHPLBJKB_01407 0.63 -1.3
1,451,384 - OHPLBJKB_01407 0.63 +0.7
1,451,385 + OHPLBJKB_01407 0.63 +0.5
1,451,385 + OHPLBJKB_01407 0.63 +0.1
1,451,385 + OHPLBJKB_01407 0.63 +1.0
1,451,385 + OHPLBJKB_01407 0.63 -0.2
1,451,385 + OHPLBJKB_01407 0.63 -0.7
1,451,385 + OHPLBJKB_01407 0.63 -0.1
1,451,385 + OHPLBJKB_01407 0.63 +0.4
1,451,385 + OHPLBJKB_01407 0.63 +0.5
1,451,385 + OHPLBJKB_01407 0.63 -0.3
1,451,385 + OHPLBJKB_01407 0.63 +0.8
1,451,385 + OHPLBJKB_01407 0.63 +0.4
1,451,386 - OHPLBJKB_01407 0.63 -1.0
1,451,386 - OHPLBJKB_01407 0.63 -0.4
1,451,386 - OHPLBJKB_01407 0.63 -0.6
1,451,386 - OHPLBJKB_01407 0.63 -0.3
1,451,386 - OHPLBJKB_01407 0.63 -0.2
1,451,386 - OHPLBJKB_01407 0.63 -1.0
1,451,386 - OHPLBJKB_01407 0.63 -0.7
1,451,386 - OHPLBJKB_01407 0.63 +0.0
1,451,404 + OHPLBJKB_01407 0.64 -0.8
1,451,408 - OHPLBJKB_01407 0.65 +0.2
1,451,408 - OHPLBJKB_01407 0.65 -0.5
1,451,416 - OHPLBJKB_01407 0.65 +0.6
1,451,447 - OHPLBJKB_01407 0.67 -0.7
1,451,509 + OHPLBJKB_01407 0.71 -0.7
1,451,590 + OHPLBJKB_01407 0.77 +0.7
1,451,629 + OHPLBJKB_01407 0.79 +0.1
1,451,629 + OHPLBJKB_01407 0.79 -0.8
1,451,629 + OHPLBJKB_01407 0.79 +0.6
1,451,630 - OHPLBJKB_01407 0.80 +1.0
1,451,746 - OHPLBJKB_01407 0.87 +0.8
1,451,833 - -1.1
1,451,870 + -0.6
1,451,911 + -1.3
1,451,974 + -0.8
1,451,974 + +0.6
1,451,975 - +1.1
1,451,984 - -0.8
1,452,009 - -0.6
1,452,053 + +0.6
1,452,053 + +0.0

Or see this region's nucleotide sequence