Experiment: BWC1S MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03757 and OHPLBJKB_03758 are separated by 64 nucleotides OHPLBJKB_03758 and OHPLBJKB_03759 are separated by 211 nucleotides
OHPLBJKB_03757: OHPLBJKB_03757 - N-acetylneuraminate epimerase, at 3,942,232 to 3,943,338
_03757
OHPLBJKB_03758: OHPLBJKB_03758 - putative 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 3,943,403 to 3,944,383
_03758
OHPLBJKB_03759: OHPLBJKB_03759 - hypothetical protein, at 3,944,595 to 3,945,467
_03759
Position (kb)
3943
3944
3945 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3942.543 kb on + strand, within OHPLBJKB_03757 at 3942.543 kb on + strand, within OHPLBJKB_03757 at 3942.559 kb on + strand, within OHPLBJKB_03757 at 3942.635 kb on + strand, within OHPLBJKB_03757 at 3942.653 kb on - strand, within OHPLBJKB_03757 at 3942.653 kb on - strand, within OHPLBJKB_03757 at 3942.692 kb on - strand, within OHPLBJKB_03757 at 3943.114 kb on + strand, within OHPLBJKB_03757 at 3943.114 kb on + strand, within OHPLBJKB_03757 at 3943.144 kb on - strand, within OHPLBJKB_03757 at 3943.430 kb on + strand at 3943.433 kb on + strand at 3943.434 kb on - strand at 3943.434 kb on - strand at 3943.459 kb on + strand at 3943.460 kb on - strand at 3943.526 kb on - strand, within OHPLBJKB_03758 at 3943.589 kb on - strand, within OHPLBJKB_03758 at 3943.589 kb on - strand, within OHPLBJKB_03758 at 3943.671 kb on - strand, within OHPLBJKB_03758 at 3943.696 kb on + strand, within OHPLBJKB_03758 at 3943.710 kb on + strand, within OHPLBJKB_03758 at 3943.720 kb on + strand, within OHPLBJKB_03758 at 3943.720 kb on + strand, within OHPLBJKB_03758 at 3943.799 kb on + strand, within OHPLBJKB_03758 at 3943.953 kb on + strand, within OHPLBJKB_03758 at 3943.953 kb on + strand, within OHPLBJKB_03758 at 3943.953 kb on + strand, within OHPLBJKB_03758 at 3943.954 kb on - strand, within OHPLBJKB_03758 at 3943.990 kb on + strand, within OHPLBJKB_03758 at 3943.997 kb on - strand, within OHPLBJKB_03758 at 3944.047 kb on + strand, within OHPLBJKB_03758 at 3944.051 kb on - strand, within OHPLBJKB_03758 at 3944.118 kb on - strand, within OHPLBJKB_03758 at 3944.118 kb on - strand, within OHPLBJKB_03758 at 3944.118 kb on - strand, within OHPLBJKB_03758 at 3944.126 kb on - strand, within OHPLBJKB_03758 at 3944.126 kb on - strand, within OHPLBJKB_03758 at 3944.146 kb on + strand, within OHPLBJKB_03758 at 3944.162 kb on - strand, within OHPLBJKB_03758 at 3944.165 kb on - strand, within OHPLBJKB_03758 at 3944.235 kb on + strand, within OHPLBJKB_03758 at 3944.236 kb on - strand, within OHPLBJKB_03758 at 3944.246 kb on + strand, within OHPLBJKB_03758 at 3944.349 kb on + strand at 3944.350 kb on - strand at 3944.477 kb on + strand at 3944.649 kb on - strand at 3944.695 kb on + strand, within OHPLBJKB_03759 at 3944.695 kb on + strand, within OHPLBJKB_03759 at 3944.696 kb on - strand, within OHPLBJKB_03759 at 3944.751 kb on + strand, within OHPLBJKB_03759 at 3944.751 kb on + strand, within OHPLBJKB_03759 at 3944.752 kb on - strand, within OHPLBJKB_03759 at 3944.771 kb on - strand, within OHPLBJKB_03759 at 3944.814 kb on - strand, within OHPLBJKB_03759 at 3944.830 kb on + strand, within OHPLBJKB_03759 at 3944.854 kb on + strand, within OHPLBJKB_03759 at 3944.855 kb on - strand, within OHPLBJKB_03759 at 3944.855 kb on - strand, within OHPLBJKB_03759 at 3944.855 kb on - strand, within OHPLBJKB_03759 at 3944.922 kb on + strand, within OHPLBJKB_03759 at 3944.990 kb on + strand, within OHPLBJKB_03759 at 3944.990 kb on + strand, within OHPLBJKB_03759 at 3945.127 kb on - strand, within OHPLBJKB_03759 at 3945.129 kb on - strand, within OHPLBJKB_03759 at 3945.129 kb on - strand, within OHPLBJKB_03759 at 3945.132 kb on + strand, within OHPLBJKB_03759 at 3945.132 kb on + strand, within OHPLBJKB_03759 at 3945.132 kb on + strand, within OHPLBJKB_03759 at 3945.132 kb on + strand, within OHPLBJKB_03759 at 3945.132 kb on + strand, within OHPLBJKB_03759 at 3945.133 kb on - strand, within OHPLBJKB_03759 at 3945.156 kb on - strand, within OHPLBJKB_03759 at 3945.158 kb on + strand, within OHPLBJKB_03759 at 3945.158 kb on + strand, within OHPLBJKB_03759 at 3945.159 kb on - strand, within OHPLBJKB_03759 at 3945.202 kb on + strand, within OHPLBJKB_03759 at 3945.203 kb on - strand, within OHPLBJKB_03759 at 3945.203 kb on - strand, within OHPLBJKB_03759 at 3945.203 kb on - strand, within OHPLBJKB_03759 at 3945.203 kb on - strand, within OHPLBJKB_03759 at 3945.281 kb on + strand, within OHPLBJKB_03759 at 3945.282 kb on - strand, within OHPLBJKB_03759 at 3945.361 kb on + strand, within OHPLBJKB_03759
Per-strain Table
Position Strand Gene LocusTag Fraction BWC1S MOI1 remove 3,942,543 + OHPLBJKB_03757 0.28 -2.2 3,942,543 + OHPLBJKB_03757 0.28 -0.8 3,942,559 + OHPLBJKB_03757 0.30 -0.9 3,942,635 + OHPLBJKB_03757 0.36 -0.2 3,942,653 - OHPLBJKB_03757 0.38 -0.2 3,942,653 - OHPLBJKB_03757 0.38 +2.4 3,942,692 - OHPLBJKB_03757 0.42 +1.6 3,943,114 + OHPLBJKB_03757 0.80 +0.6 3,943,114 + OHPLBJKB_03757 0.80 -0.2 3,943,144 - OHPLBJKB_03757 0.82 -0.3 3,943,430 + +0.8 3,943,433 + -0.5 3,943,434 - +0.5 3,943,434 - -1.1 3,943,459 + -1.2 3,943,460 - +0.0 3,943,526 - OHPLBJKB_03758 0.13 +2.1 3,943,589 - OHPLBJKB_03758 0.19 -0.4 3,943,589 - OHPLBJKB_03758 0.19 -0.6 3,943,671 - OHPLBJKB_03758 0.27 -1.1 3,943,696 + OHPLBJKB_03758 0.30 +1.0 3,943,710 + OHPLBJKB_03758 0.31 -0.8 3,943,720 + OHPLBJKB_03758 0.32 -2.4 3,943,720 + OHPLBJKB_03758 0.32 -0.4 3,943,799 + OHPLBJKB_03758 0.40 +0.5 3,943,953 + OHPLBJKB_03758 0.56 +0.3 3,943,953 + OHPLBJKB_03758 0.56 +0.2 3,943,953 + OHPLBJKB_03758 0.56 +1.4 3,943,954 - OHPLBJKB_03758 0.56 +1.4 3,943,990 + OHPLBJKB_03758 0.60 -0.4 3,943,997 - OHPLBJKB_03758 0.61 -0.0 3,944,047 + OHPLBJKB_03758 0.66 +1.0 3,944,051 - OHPLBJKB_03758 0.66 -1.0 3,944,118 - OHPLBJKB_03758 0.73 +1.1 3,944,118 - OHPLBJKB_03758 0.73 -0.5 3,944,118 - OHPLBJKB_03758 0.73 -0.0 3,944,126 - OHPLBJKB_03758 0.74 -0.1 3,944,126 - OHPLBJKB_03758 0.74 +0.1 3,944,146 + OHPLBJKB_03758 0.76 -1.5 3,944,162 - OHPLBJKB_03758 0.77 -0.4 3,944,165 - OHPLBJKB_03758 0.78 -0.1 3,944,235 + OHPLBJKB_03758 0.85 -0.3 3,944,236 - OHPLBJKB_03758 0.85 -1.5 3,944,246 + OHPLBJKB_03758 0.86 -2.3 3,944,349 + +0.4 3,944,350 - -0.1 3,944,477 + -0.9 3,944,649 - -0.2 3,944,695 + OHPLBJKB_03759 0.11 -0.9 3,944,695 + OHPLBJKB_03759 0.11 +1.5 3,944,696 - OHPLBJKB_03759 0.12 +2.6 3,944,751 + OHPLBJKB_03759 0.18 -0.3 3,944,751 + OHPLBJKB_03759 0.18 -1.1 3,944,752 - OHPLBJKB_03759 0.18 +0.6 3,944,771 - OHPLBJKB_03759 0.20 -2.0 3,944,814 - OHPLBJKB_03759 0.25 +0.1 3,944,830 + OHPLBJKB_03759 0.27 -0.6 3,944,854 + OHPLBJKB_03759 0.30 +0.1 3,944,855 - OHPLBJKB_03759 0.30 -1.1 3,944,855 - OHPLBJKB_03759 0.30 +1.4 3,944,855 - OHPLBJKB_03759 0.30 -0.2 3,944,922 + OHPLBJKB_03759 0.37 -1.2 3,944,990 + OHPLBJKB_03759 0.45 +1.0 3,944,990 + OHPLBJKB_03759 0.45 +0.3 3,945,127 - OHPLBJKB_03759 0.61 -1.0 3,945,129 - OHPLBJKB_03759 0.61 +0.9 3,945,129 - OHPLBJKB_03759 0.61 +0.1 3,945,132 + OHPLBJKB_03759 0.62 -2.5 3,945,132 + OHPLBJKB_03759 0.62 -0.5 3,945,132 + OHPLBJKB_03759 0.62 -2.2 3,945,132 + OHPLBJKB_03759 0.62 -0.7 3,945,132 + OHPLBJKB_03759 0.62 -1.1 3,945,133 - OHPLBJKB_03759 0.62 -2.4 3,945,156 - OHPLBJKB_03759 0.64 -0.0 3,945,158 + OHPLBJKB_03759 0.64 +0.3 3,945,158 + OHPLBJKB_03759 0.64 +0.8 3,945,159 - OHPLBJKB_03759 0.65 -2.5 3,945,202 + OHPLBJKB_03759 0.70 -2.4 3,945,203 - OHPLBJKB_03759 0.70 -0.1 3,945,203 - OHPLBJKB_03759 0.70 -0.3 3,945,203 - OHPLBJKB_03759 0.70 +3.4 3,945,203 - OHPLBJKB_03759 0.70 +0.3 3,945,281 + OHPLBJKB_03759 0.79 +1.7 3,945,282 - OHPLBJKB_03759 0.79 +1.2 3,945,361 + OHPLBJKB_03759 0.88 -0.1
Or see this region's nucleotide sequence