Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00601

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00598 and OHPLBJKB_00599 overlap by 11 nucleotidesOHPLBJKB_00599 and OHPLBJKB_00600 are separated by 2 nucleotidesOHPLBJKB_00600 and OHPLBJKB_00601 are separated by 37 nucleotidesOHPLBJKB_00601 and OHPLBJKB_00602 are separated by 146 nucleotidesOHPLBJKB_00602 and OHPLBJKB_00603 are separated by 3 nucleotides OHPLBJKB_00598: OHPLBJKB_00598 - hypothetical protein, at 611,612 to 611,911 _00598 OHPLBJKB_00599: OHPLBJKB_00599 - Inner membrane protein YqjE, at 611,901 to 612,305 _00599 OHPLBJKB_00600: OHPLBJKB_00600 - putative protein YqjD, at 612,308 to 612,613 _00600 OHPLBJKB_00601: OHPLBJKB_00601 - Protein YqjC, at 612,651 to 613,019 _00601 OHPLBJKB_00602: OHPLBJKB_00602 - Modulator protein MzrA, at 613,166 to 613,549 _00602 OHPLBJKB_00603: OHPLBJKB_00603 - Inner membrane protein YqjA, at 613,553 to 614,215 _00603 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1at 611.704 kb on + strand, within OHPLBJKB_00598at 611.705 kb on - strand, within OHPLBJKB_00598at 611.705 kb on - strand, within OHPLBJKB_00598at 611.705 kb on - strand, within OHPLBJKB_00598at 611.705 kb on - strand, within OHPLBJKB_00598at 611.705 kb on - strand, within OHPLBJKB_00598at 611.708 kb on - strand, within OHPLBJKB_00598at 611.708 kb on - strand, within OHPLBJKB_00598at 611.708 kb on - strand, within OHPLBJKB_00598at 611.708 kb on - strand, within OHPLBJKB_00598at 611.708 kb on - strand, within OHPLBJKB_00598at 611.771 kb on + strand, within OHPLBJKB_00598at 611.771 kb on + strand, within OHPLBJKB_00598at 611.779 kb on + strand, within OHPLBJKB_00598at 611.881 kb on + strand, within OHPLBJKB_00598at 611.960 kb on + strand, within OHPLBJKB_00599at 611.990 kb on + strand, within OHPLBJKB_00599at 611.995 kb on - strand, within OHPLBJKB_00599at 611.995 kb on - strand, within OHPLBJKB_00599at 612.024 kb on + strand, within OHPLBJKB_00599at 612.089 kb on + strand, within OHPLBJKB_00599at 612.090 kb on - strand, within OHPLBJKB_00599at 612.093 kb on + strand, within OHPLBJKB_00599at 612.093 kb on + strand, within OHPLBJKB_00599at 612.111 kb on - strand, within OHPLBJKB_00599at 612.111 kb on - strand, within OHPLBJKB_00599at 612.111 kb on - strand, within OHPLBJKB_00599at 612.111 kb on - strand, within OHPLBJKB_00599at 612.171 kb on - strand, within OHPLBJKB_00599at 612.171 kb on - strand, within OHPLBJKB_00599at 612.171 kb on - strand, within OHPLBJKB_00599at 612.305 kb on + strandat 612.309 kb on + strandat 612.338 kb on + strandat 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.390 kb on + strand, within OHPLBJKB_00600at 612.391 kb on - strand, within OHPLBJKB_00600at 612.391 kb on - strand, within OHPLBJKB_00600at 612.493 kb on + strand, within OHPLBJKB_00600at 612.538 kb on + strand, within OHPLBJKB_00600at 612.538 kb on + strand, within OHPLBJKB_00600at 612.538 kb on + strand, within OHPLBJKB_00600at 612.538 kb on + strand, within OHPLBJKB_00600at 612.538 kb on + strand, within OHPLBJKB_00600at 612.539 kb on - strand, within OHPLBJKB_00600at 612.596 kb on - strandat 612.613 kb on + strandat 612.613 kb on + strandat 612.614 kb on - strandat 612.631 kb on + strandat 612.631 kb on + strandat 612.631 kb on + strandat 612.632 kb on - strandat 612.632 kb on - strandat 612.632 kb on - strandat 612.632 kb on - strandat 612.632 kb on - strandat 612.632 kb on - strandat 612.636 kb on - strandat 612.636 kb on - strandat 612.642 kb on + strandat 612.642 kb on + strandat 612.643 kb on - strandat 612.652 kb on + strandat 612.830 kb on + strand, within OHPLBJKB_00601at 612.866 kb on + strand, within OHPLBJKB_00601at 612.910 kb on + strand, within OHPLBJKB_00601at 612.910 kb on + strand, within OHPLBJKB_00601at 612.910 kb on + strand, within OHPLBJKB_00601at 612.911 kb on - strand, within OHPLBJKB_00601at 612.911 kb on - strand, within OHPLBJKB_00601at 612.930 kb on - strand, within OHPLBJKB_00601at 612.964 kb on + strand, within OHPLBJKB_00601at 612.964 kb on + strand, within OHPLBJKB_00601at 612.964 kb on + strand, within OHPLBJKB_00601at 612.964 kb on + strand, within OHPLBJKB_00601at 612.964 kb on + strand, within OHPLBJKB_00601at 612.965 kb on - strand, within OHPLBJKB_00601at 612.965 kb on - strand, within OHPLBJKB_00601at 612.969 kb on - strand, within OHPLBJKB_00601at 612.969 kb on - strand, within OHPLBJKB_00601at 612.977 kb on + strand, within OHPLBJKB_00601at 612.978 kb on - strand, within OHPLBJKB_00601at 613.000 kb on - strandat 613.000 kb on - strandat 613.000 kb on - strandat 613.013 kb on - strandat 613.048 kb on + strandat 613.049 kb on - strandat 613.049 kb on - strandat 613.051 kb on + strandat 613.051 kb on + strandat 613.051 kb on + strandat 613.052 kb on - strandat 613.052 kb on - strandat 613.052 kb on - strandat 613.052 kb on - strandat 613.052 kb on - strandat 613.106 kb on - strandat 613.112 kb on - strandat 613.120 kb on - strandat 613.145 kb on + strandat 613.187 kb on - strandat 613.226 kb on - strand, within OHPLBJKB_00602at 613.226 kb on - strand, within OHPLBJKB_00602at 613.248 kb on + strand, within OHPLBJKB_00602at 613.249 kb on - strand, within OHPLBJKB_00602at 613.249 kb on - strand, within OHPLBJKB_00602at 613.249 kb on - strand, within OHPLBJKB_00602at 613.249 kb on - strand, within OHPLBJKB_00602at 613.315 kb on + strand, within OHPLBJKB_00602at 613.315 kb on + strand, within OHPLBJKB_00602at 613.315 kb on + strand, within OHPLBJKB_00602at 613.320 kb on - strand, within OHPLBJKB_00602at 613.320 kb on - strand, within OHPLBJKB_00602at 613.345 kb on + strand, within OHPLBJKB_00602at 613.441 kb on + strand, within OHPLBJKB_00602at 613.496 kb on + strand, within OHPLBJKB_00602at 613.496 kb on + strand, within OHPLBJKB_00602at 613.496 kb on + strand, within OHPLBJKB_00602at 613.541 kb on + strandat 613.542 kb on - strandat 613.665 kb on + strand, within OHPLBJKB_00603at 613.666 kb on - strand, within OHPLBJKB_00603at 613.698 kb on + strand, within OHPLBJKB_00603at 613.698 kb on + strand, within OHPLBJKB_00603at 613.698 kb on + strand, within OHPLBJKB_00603at 613.698 kb on + strand, within OHPLBJKB_00603at 613.722 kb on - strand, within OHPLBJKB_00603at 613.822 kb on + strand, within OHPLBJKB_00603at 613.823 kb on - strand, within OHPLBJKB_00603at 613.836 kb on - strand, within OHPLBJKB_00603at 613.956 kb on + strand, within OHPLBJKB_00603at 613.956 kb on + strand, within OHPLBJKB_00603at 613.956 kb on + strand, within OHPLBJKB_00603at 613.957 kb on - strand, within OHPLBJKB_00603

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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611,704 + OHPLBJKB_00598 0.31 +0.7
611,705 - OHPLBJKB_00598 0.31 +0.6
611,705 - OHPLBJKB_00598 0.31 +0.2
611,705 - OHPLBJKB_00598 0.31 -0.6
611,705 - OHPLBJKB_00598 0.31 +0.3
611,705 - OHPLBJKB_00598 0.31 -0.1
611,708 - OHPLBJKB_00598 0.32 +0.7
611,708 - OHPLBJKB_00598 0.32 -0.8
611,708 - OHPLBJKB_00598 0.32 -0.4
611,708 - OHPLBJKB_00598 0.32 -0.4
611,708 - OHPLBJKB_00598 0.32 -0.2
611,771 + OHPLBJKB_00598 0.53 -0.2
611,771 + OHPLBJKB_00598 0.53 -1.3
611,779 + OHPLBJKB_00598 0.56 +0.3
611,881 + OHPLBJKB_00598 0.90 -0.3
611,960 + OHPLBJKB_00599 0.15 -1.1
611,990 + OHPLBJKB_00599 0.22 -0.8
611,995 - OHPLBJKB_00599 0.23 -0.4
611,995 - OHPLBJKB_00599 0.23 +0.7
612,024 + OHPLBJKB_00599 0.30 -1.2
612,089 + OHPLBJKB_00599 0.46 +1.1
612,090 - OHPLBJKB_00599 0.47 -0.9
612,093 + OHPLBJKB_00599 0.47 -1.7
612,093 + OHPLBJKB_00599 0.47 +0.2
612,111 - OHPLBJKB_00599 0.52 -0.8
612,111 - OHPLBJKB_00599 0.52 -0.3
612,111 - OHPLBJKB_00599 0.52 +0.9
612,111 - OHPLBJKB_00599 0.52 +1.3
612,171 - OHPLBJKB_00599 0.67 -0.5
612,171 - OHPLBJKB_00599 0.67 -1.8
612,171 - OHPLBJKB_00599 0.67 +0.0
612,305 + -0.5
612,309 + -0.1
612,338 + -1.5
612,390 + OHPLBJKB_00600 0.27 -0.0
612,390 + OHPLBJKB_00600 0.27 +0.2
612,390 + OHPLBJKB_00600 0.27 -1.0
612,390 + OHPLBJKB_00600 0.27 -0.4
612,390 + OHPLBJKB_00600 0.27 +1.0
612,390 + OHPLBJKB_00600 0.27 -1.6
612,390 + OHPLBJKB_00600 0.27 -1.5
612,390 + OHPLBJKB_00600 0.27 +0.9
612,391 - OHPLBJKB_00600 0.27 -0.1
612,391 - OHPLBJKB_00600 0.27 +0.1
612,493 + OHPLBJKB_00600 0.60 -0.3
612,538 + OHPLBJKB_00600 0.75 +0.3
612,538 + OHPLBJKB_00600 0.75 -0.6
612,538 + OHPLBJKB_00600 0.75 +0.5
612,538 + OHPLBJKB_00600 0.75 -2.2
612,538 + OHPLBJKB_00600 0.75 -0.8
612,539 - OHPLBJKB_00600 0.75 -1.5
612,596 - +0.0
612,613 + -0.2
612,613 + -0.8
612,614 - +0.6
612,631 + -1.2
612,631 + -1.6
612,631 + -0.5
612,632 - +1.1
612,632 - +0.5
612,632 - -0.2
612,632 - -0.6
612,632 - -0.8
612,632 - -1.5
612,636 - +0.5
612,636 - -1.8
612,642 + +1.2
612,642 + +1.2
612,643 - -0.7
612,652 + -0.3
612,830 + OHPLBJKB_00601 0.49 -1.6
612,866 + OHPLBJKB_00601 0.58 +0.6
612,910 + OHPLBJKB_00601 0.70 -1.2
612,910 + OHPLBJKB_00601 0.70 -0.1
612,910 + OHPLBJKB_00601 0.70 -0.1
612,911 - OHPLBJKB_00601 0.70 -0.2
612,911 - OHPLBJKB_00601 0.70 +0.2
612,930 - OHPLBJKB_00601 0.76 -0.8
612,964 + OHPLBJKB_00601 0.85 -1.0
612,964 + OHPLBJKB_00601 0.85 +0.0
612,964 + OHPLBJKB_00601 0.85 +0.2
612,964 + OHPLBJKB_00601 0.85 +0.1
612,964 + OHPLBJKB_00601 0.85 -0.8
612,965 - OHPLBJKB_00601 0.85 -1.2
612,965 - OHPLBJKB_00601 0.85 -1.5
612,969 - OHPLBJKB_00601 0.86 -1.4
612,969 - OHPLBJKB_00601 0.86 +0.4
612,977 + OHPLBJKB_00601 0.88 -0.8
612,978 - OHPLBJKB_00601 0.89 +0.2
613,000 - +0.0
613,000 - -1.2
613,000 - +0.7
613,013 - +0.1
613,048 + +0.2
613,049 - +0.7
613,049 - -0.2
613,051 + -1.2
613,051 + -0.1
613,051 + +0.4
613,052 - +0.2
613,052 - +0.1
613,052 - -1.4
613,052 - -1.6
613,052 - -1.8
613,106 - -1.3
613,112 - +1.1
613,120 - -1.7
613,145 + -0.5
613,187 - -0.5
613,226 - OHPLBJKB_00602 0.16 -0.9
613,226 - OHPLBJKB_00602 0.16 -1.3
613,248 + OHPLBJKB_00602 0.21 -1.6
613,249 - OHPLBJKB_00602 0.22 -2.6
613,249 - OHPLBJKB_00602 0.22 -0.9
613,249 - OHPLBJKB_00602 0.22 -1.5
613,249 - OHPLBJKB_00602 0.22 -0.4
613,315 + OHPLBJKB_00602 0.39 -1.4
613,315 + OHPLBJKB_00602 0.39 +0.2
613,315 + OHPLBJKB_00602 0.39 -1.0
613,320 - OHPLBJKB_00602 0.40 -1.2
613,320 - OHPLBJKB_00602 0.40 -0.5
613,345 + OHPLBJKB_00602 0.47 -1.6
613,441 + OHPLBJKB_00602 0.72 -0.6
613,496 + OHPLBJKB_00602 0.86 +0.9
613,496 + OHPLBJKB_00602 0.86 -0.1
613,496 + OHPLBJKB_00602 0.86 -2.1
613,541 + +0.2
613,542 - +0.0
613,665 + OHPLBJKB_00603 0.17 +0.6
613,666 - OHPLBJKB_00603 0.17 +0.8
613,698 + OHPLBJKB_00603 0.22 -0.5
613,698 + OHPLBJKB_00603 0.22 -1.4
613,698 + OHPLBJKB_00603 0.22 -0.3
613,698 + OHPLBJKB_00603 0.22 -1.1
613,722 - OHPLBJKB_00603 0.25 +0.5
613,822 + OHPLBJKB_00603 0.41 -0.3
613,823 - OHPLBJKB_00603 0.41 +0.1
613,836 - OHPLBJKB_00603 0.43 -2.3
613,956 + OHPLBJKB_00603 0.61 +0.3
613,956 + OHPLBJKB_00603 0.61 -1.5
613,956 + OHPLBJKB_00603 0.61 -0.9
613,957 - OHPLBJKB_00603 0.61 -0.4

Or see this region's nucleotide sequence