Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00537

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00536 and OHPLBJKB_00537 are separated by 108 nucleotidesOHPLBJKB_00537 and OHPLBJKB_00538 are separated by 179 nucleotides OHPLBJKB_00536: OHPLBJKB_00536 - Polyribonucleotide nucleotidyltransferase, at 548,807 to 550,942 _00536 OHPLBJKB_00537: OHPLBJKB_00537 - Lipoprotein NlpI, at 551,051 to 551,935 _00537 OHPLBJKB_00538: OHPLBJKB_00538 - ATP-dependent RNA helicase DeaD, at 552,115 to 554,004 _00538 Position (kb) 551 552Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 550.073 kb on + strand, within OHPLBJKB_00536at 550.080 kb on + strand, within OHPLBJKB_00536at 550.080 kb on + strand, within OHPLBJKB_00536at 550.080 kb on + strand, within OHPLBJKB_00536at 550.081 kb on - strand, within OHPLBJKB_00536at 550.081 kb on - strand, within OHPLBJKB_00536at 550.081 kb on - strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.229 kb on + strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.230 kb on - strand, within OHPLBJKB_00536at 550.236 kb on + strand, within OHPLBJKB_00536at 550.236 kb on + strand, within OHPLBJKB_00536at 550.236 kb on + strand, within OHPLBJKB_00536at 550.237 kb on - strand, within OHPLBJKB_00536at 550.237 kb on - strand, within OHPLBJKB_00536at 550.310 kb on - strand, within OHPLBJKB_00536at 550.474 kb on + strand, within OHPLBJKB_00536at 550.531 kb on - strand, within OHPLBJKB_00536at 550.631 kb on - strand, within OHPLBJKB_00536at 550.679 kb on + strand, within OHPLBJKB_00536at 550.680 kb on - strand, within OHPLBJKB_00536at 550.687 kb on + strand, within OHPLBJKB_00536at 550.688 kb on - strand, within OHPLBJKB_00536at 550.752 kb on + strandat 550.753 kb on - strandat 550.941 kb on - strandat 551.001 kb on - strandat 551.092 kb on + strandat 551.092 kb on + strandat 551.092 kb on + strandat 551.092 kb on + strandat 551.093 kb on - strandat 551.093 kb on - strandat 551.093 kb on - strandat 551.110 kb on + strandat 551.113 kb on + strandat 551.113 kb on + strandat 551.113 kb on + strandat 551.114 kb on - strandat 551.114 kb on - strandat 551.114 kb on - strandat 551.125 kb on + strandat 551.163 kb on + strand, within OHPLBJKB_00537at 551.164 kb on - strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.188 kb on + strand, within OHPLBJKB_00537at 551.244 kb on + strand, within OHPLBJKB_00537at 551.244 kb on + strand, within OHPLBJKB_00537at 551.245 kb on - strand, within OHPLBJKB_00537at 551.245 kb on - strand, within OHPLBJKB_00537at 551.246 kb on + strand, within OHPLBJKB_00537at 551.246 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.264 kb on + strand, within OHPLBJKB_00537at 551.343 kb on + strand, within OHPLBJKB_00537at 551.351 kb on + strand, within OHPLBJKB_00537at 551.361 kb on + strand, within OHPLBJKB_00537at 551.361 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.363 kb on + strand, within OHPLBJKB_00537at 551.367 kb on + strand, within OHPLBJKB_00537at 551.396 kb on + strand, within OHPLBJKB_00537at 551.435 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.441 kb on + strand, within OHPLBJKB_00537at 551.469 kb on + strand, within OHPLBJKB_00537at 551.469 kb on + strand, within OHPLBJKB_00537at 551.471 kb on + strand, within OHPLBJKB_00537at 551.471 kb on + strand, within OHPLBJKB_00537at 551.519 kb on + strand, within OHPLBJKB_00537at 551.561 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.765 kb on + strand, within OHPLBJKB_00537at 551.773 kb on + strand, within OHPLBJKB_00537at 551.773 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.777 kb on + strand, within OHPLBJKB_00537at 551.780 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.784 kb on + strand, within OHPLBJKB_00537at 551.933 kb on + strandat 551.933 kb on + strandat 551.942 kb on + strandat 551.942 kb on + strandat 551.942 kb on + strandat 552.010 kb on + strandat 552.016 kb on + strandat 552.016 kb on + strandat 552.016 kb on + strandat 552.016 kb on + strandat 552.073 kb on + strandat 552.073 kb on + strandat 552.077 kb on + strandat 552.112 kb on + strandat 552.112 kb on + strandat 552.222 kb on + strandat 552.807 kb on + strand, within OHPLBJKB_00538at 552.824 kb on + strand, within OHPLBJKB_00538

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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550,073 + OHPLBJKB_00536 0.59 +1.0
550,080 + OHPLBJKB_00536 0.60 -0.7
550,080 + OHPLBJKB_00536 0.60 -1.4
550,080 + OHPLBJKB_00536 0.60 +1.2
550,081 - OHPLBJKB_00536 0.60 +0.2
550,081 - OHPLBJKB_00536 0.60 +1.8
550,081 - OHPLBJKB_00536 0.60 +1.1
550,229 + OHPLBJKB_00536 0.67 +1.0
550,229 + OHPLBJKB_00536 0.67 -0.9
550,229 + OHPLBJKB_00536 0.67 -0.9
550,229 + OHPLBJKB_00536 0.67 +0.2
550,229 + OHPLBJKB_00536 0.67 -0.9
550,229 + OHPLBJKB_00536 0.67 -1.2
550,229 + OHPLBJKB_00536 0.67 +0.8
550,229 + OHPLBJKB_00536 0.67 +1.3
550,229 + OHPLBJKB_00536 0.67 -0.8
550,229 + OHPLBJKB_00536 0.67 -0.4
550,229 + OHPLBJKB_00536 0.67 -1.1
550,229 + OHPLBJKB_00536 0.67 -0.1
550,230 - OHPLBJKB_00536 0.67 +1.5
550,230 - OHPLBJKB_00536 0.67 +0.2
550,230 - OHPLBJKB_00536 0.67 +1.0
550,230 - OHPLBJKB_00536 0.67 +0.8
550,236 + OHPLBJKB_00536 0.67 -0.9
550,236 + OHPLBJKB_00536 0.67 -1.4
550,236 + OHPLBJKB_00536 0.67 +0.3
550,237 - OHPLBJKB_00536 0.67 +0.2
550,237 - OHPLBJKB_00536 0.67 -0.5
550,310 - OHPLBJKB_00536 0.70 +0.2
550,474 + OHPLBJKB_00536 0.78 +0.2
550,531 - OHPLBJKB_00536 0.81 +0.0
550,631 - OHPLBJKB_00536 0.85 +1.2
550,679 + OHPLBJKB_00536 0.88 +1.3
550,680 - OHPLBJKB_00536 0.88 +0.0
550,687 + OHPLBJKB_00536 0.88 +0.4
550,688 - OHPLBJKB_00536 0.88 +1.0
550,752 + +1.8
550,753 - -0.1
550,941 - +0.3
551,001 - +0.5
551,092 + +0.9
551,092 + +1.0
551,092 + +0.8
551,092 + +0.2
551,093 - +1.0
551,093 - +0.8
551,093 - -0.4
551,110 + +0.4
551,113 + +0.3
551,113 + -0.7
551,113 + -0.4
551,114 - +0.3
551,114 - -0.6
551,114 - +0.9
551,125 + -0.1
551,163 + OHPLBJKB_00537 0.13 +0.6
551,164 - OHPLBJKB_00537 0.13 +1.6
551,188 + OHPLBJKB_00537 0.15 +1.5
551,188 + OHPLBJKB_00537 0.15 +1.2
551,188 + OHPLBJKB_00537 0.15 -0.7
551,188 + OHPLBJKB_00537 0.15 +1.1
551,244 + OHPLBJKB_00537 0.22 +1.3
551,244 + OHPLBJKB_00537 0.22 +0.7
551,245 - OHPLBJKB_00537 0.22 -1.8
551,245 - OHPLBJKB_00537 0.22 -1.5
551,246 + OHPLBJKB_00537 0.22 +0.3
551,246 + OHPLBJKB_00537 0.22 -0.6
551,264 + OHPLBJKB_00537 0.24 +0.0
551,264 + OHPLBJKB_00537 0.24 -0.2
551,264 + OHPLBJKB_00537 0.24 -0.1
551,264 + OHPLBJKB_00537 0.24 +0.3
551,343 + OHPLBJKB_00537 0.33 +0.3
551,351 + OHPLBJKB_00537 0.34 +0.2
551,361 + OHPLBJKB_00537 0.35 -0.7
551,361 + OHPLBJKB_00537 0.35 -1.0
551,363 + OHPLBJKB_00537 0.35 +0.2
551,363 + OHPLBJKB_00537 0.35 +0.9
551,363 + OHPLBJKB_00537 0.35 -0.5
551,363 + OHPLBJKB_00537 0.35 -0.5
551,367 + OHPLBJKB_00537 0.36 +0.2
551,396 + OHPLBJKB_00537 0.39 +0.0
551,435 + OHPLBJKB_00537 0.43 -0.5
551,441 + OHPLBJKB_00537 0.44 +1.0
551,441 + OHPLBJKB_00537 0.44 -0.4
551,441 + OHPLBJKB_00537 0.44 -0.3
551,469 + OHPLBJKB_00537 0.47 +0.2
551,469 + OHPLBJKB_00537 0.47 +0.0
551,471 + OHPLBJKB_00537 0.47 +0.5
551,471 + OHPLBJKB_00537 0.47 -0.2
551,519 + OHPLBJKB_00537 0.53 +7.1
551,561 + OHPLBJKB_00537 0.58 +0.4
551,765 + OHPLBJKB_00537 0.81 +0.1
551,765 + OHPLBJKB_00537 0.81 +0.9
551,765 + OHPLBJKB_00537 0.81 +0.3
551,765 + OHPLBJKB_00537 0.81 +0.8
551,765 + OHPLBJKB_00537 0.81 +0.7
551,773 + OHPLBJKB_00537 0.82 +3.5
551,773 + OHPLBJKB_00537 0.82 +0.5
551,777 + OHPLBJKB_00537 0.82 -1.1
551,777 + OHPLBJKB_00537 0.82 +0.9
551,777 + OHPLBJKB_00537 0.82 -0.1
551,777 + OHPLBJKB_00537 0.82 +0.1
551,777 + OHPLBJKB_00537 0.82 +0.0
551,777 + OHPLBJKB_00537 0.82 +0.2
551,777 + OHPLBJKB_00537 0.82 +1.2
551,780 + OHPLBJKB_00537 0.82 -1.4
551,784 + OHPLBJKB_00537 0.83 +1.3
551,784 + OHPLBJKB_00537 0.83 +0.4
551,784 + OHPLBJKB_00537 0.83 +1.1
551,784 + OHPLBJKB_00537 0.83 +1.8
551,933 + -1.2
551,933 + -0.3
551,942 + -1.4
551,942 + -0.7
551,942 + +0.7
552,010 + -0.1
552,016 + -1.1
552,016 + -0.1
552,016 + -2.0
552,016 + -0.3
552,073 + +1.3
552,073 + +0.3
552,077 + -1.0
552,112 + -0.4
552,112 + +0.2
552,222 + +0.8
552,807 + OHPLBJKB_00538 0.37 -0.6
552,824 + OHPLBJKB_00538 0.38 +1.0

Or see this region's nucleotide sequence