Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00254

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00253 and OHPLBJKB_00254 overlap by 4 nucleotidesOHPLBJKB_00254 and OHPLBJKB_00255 overlap by 14 nucleotidesOHPLBJKB_00255 and OHPLBJKB_00256 are separated by 119 nucleotides OHPLBJKB_00253: OHPLBJKB_00253 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 275,463 to 276,533 _00253 OHPLBJKB_00254: OHPLBJKB_00254 - Glycerophosphodiester phosphodiesterase, cytoplasmic, at 276,530 to 277,273 _00254 OHPLBJKB_00255: OHPLBJKB_00255 - putative protein YhhA, at 277,260 to 277,700 _00255 OHPLBJKB_00256: OHPLBJKB_00256 - Glutathione hydrolase proenzyme, at 277,820 to 279,562 _00256 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 275.715 kb on + strand, within OHPLBJKB_00253at 275.716 kb on - strand, within OHPLBJKB_00253at 275.716 kb on - strand, within OHPLBJKB_00253at 275.733 kb on - strand, within OHPLBJKB_00253at 275.952 kb on - strand, within OHPLBJKB_00253at 276.030 kb on + strand, within OHPLBJKB_00253at 276.031 kb on - strand, within OHPLBJKB_00253at 276.031 kb on - strand, within OHPLBJKB_00253at 276.076 kb on + strand, within OHPLBJKB_00253at 276.077 kb on - strand, within OHPLBJKB_00253at 276.130 kb on - strand, within OHPLBJKB_00253at 276.273 kb on + strand, within OHPLBJKB_00253at 276.314 kb on + strand, within OHPLBJKB_00253at 276.314 kb on + strand, within OHPLBJKB_00253at 276.314 kb on + strand, within OHPLBJKB_00253at 276.314 kb on + strand, within OHPLBJKB_00253at 276.314 kb on + strand, within OHPLBJKB_00253at 276.314 kb on + strand, within OHPLBJKB_00253at 276.315 kb on - strand, within OHPLBJKB_00253at 276.530 kb on - strandat 276.535 kb on + strandat 276.535 kb on + strandat 276.536 kb on - strandat 276.627 kb on - strand, within OHPLBJKB_00254at 276.634 kb on + strand, within OHPLBJKB_00254at 276.634 kb on + strand, within OHPLBJKB_00254at 276.634 kb on + strand, within OHPLBJKB_00254at 276.634 kb on + strand, within OHPLBJKB_00254at 276.635 kb on - strand, within OHPLBJKB_00254at 276.988 kb on - strand, within OHPLBJKB_00254at 277.105 kb on + strand, within OHPLBJKB_00254at 277.105 kb on + strand, within OHPLBJKB_00254at 277.105 kb on + strand, within OHPLBJKB_00254at 277.106 kb on - strand, within OHPLBJKB_00254at 277.106 kb on - strand, within OHPLBJKB_00254at 277.106 kb on - strand, within OHPLBJKB_00254at 277.106 kb on - strand, within OHPLBJKB_00254at 277.106 kb on - strand, within OHPLBJKB_00254at 277.106 kb on - strand, within OHPLBJKB_00254at 277.111 kb on - strand, within OHPLBJKB_00254at 277.167 kb on - strand, within OHPLBJKB_00254at 277.168 kb on + strand, within OHPLBJKB_00254at 277.168 kb on + strand, within OHPLBJKB_00254at 277.177 kb on + strand, within OHPLBJKB_00254at 277.178 kb on - strand, within OHPLBJKB_00254at 277.271 kb on + strandat 277.271 kb on + strandat 277.346 kb on + strand, within OHPLBJKB_00255at 277.346 kb on + strand, within OHPLBJKB_00255at 277.346 kb on + strand, within OHPLBJKB_00255at 277.346 kb on + strand, within OHPLBJKB_00255at 277.346 kb on + strand, within OHPLBJKB_00255at 277.347 kb on - strand, within OHPLBJKB_00255at 277.347 kb on - strand, within OHPLBJKB_00255at 277.347 kb on - strand, within OHPLBJKB_00255at 277.376 kb on + strand, within OHPLBJKB_00255at 277.376 kb on + strand, within OHPLBJKB_00255at 277.389 kb on + strand, within OHPLBJKB_00255at 277.476 kb on - strand, within OHPLBJKB_00255at 277.476 kb on - strand, within OHPLBJKB_00255at 277.476 kb on - strand, within OHPLBJKB_00255at 277.494 kb on + strand, within OHPLBJKB_00255at 277.637 kb on + strand, within OHPLBJKB_00255at 277.637 kb on + strand, within OHPLBJKB_00255at 277.638 kb on - strand, within OHPLBJKB_00255at 277.640 kb on + strand, within OHPLBJKB_00255at 277.640 kb on + strand, within OHPLBJKB_00255at 277.679 kb on + strandat 277.728 kb on + strandat 277.728 kb on + strandat 277.729 kb on - strandat 277.761 kb on - strandat 277.771 kb on + strandat 277.771 kb on + strandat 277.771 kb on + strandat 277.771 kb on + strandat 277.771 kb on + strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.772 kb on - strandat 277.773 kb on + strandat 277.773 kb on + strandat 277.773 kb on + strandat 277.773 kb on + strandat 277.774 kb on - strandat 277.774 kb on - strandat 277.774 kb on - strandat 277.774 kb on - strandat 277.775 kb on + strandat 277.775 kb on + strandat 277.775 kb on + strandat 277.775 kb on + strandat 277.776 kb on - strandat 278.113 kb on + strand, within OHPLBJKB_00256at 278.113 kb on + strand, within OHPLBJKB_00256at 278.114 kb on - strand, within OHPLBJKB_00256at 278.141 kb on - strand, within OHPLBJKB_00256at 278.141 kb on - strand, within OHPLBJKB_00256at 278.191 kb on + strand, within OHPLBJKB_00256at 278.271 kb on + strand, within OHPLBJKB_00256

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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275,715 + OHPLBJKB_00253 0.24 +0.8
275,716 - OHPLBJKB_00253 0.24 -0.0
275,716 - OHPLBJKB_00253 0.24 -0.0
275,733 - OHPLBJKB_00253 0.25 -0.2
275,952 - OHPLBJKB_00253 0.46 +0.1
276,030 + OHPLBJKB_00253 0.53 +1.3
276,031 - OHPLBJKB_00253 0.53 -1.3
276,031 - OHPLBJKB_00253 0.53 -0.1
276,076 + OHPLBJKB_00253 0.57 -0.3
276,077 - OHPLBJKB_00253 0.57 +0.4
276,130 - OHPLBJKB_00253 0.62 -0.5
276,273 + OHPLBJKB_00253 0.76 +1.1
276,314 + OHPLBJKB_00253 0.79 -0.2
276,314 + OHPLBJKB_00253 0.79 -1.1
276,314 + OHPLBJKB_00253 0.79 -1.1
276,314 + OHPLBJKB_00253 0.79 -1.2
276,314 + OHPLBJKB_00253 0.79 -0.5
276,314 + OHPLBJKB_00253 0.79 +1.2
276,315 - OHPLBJKB_00253 0.80 +0.3
276,530 - -1.1
276,535 + -0.9
276,535 + -1.2
276,536 - -0.2
276,627 - OHPLBJKB_00254 0.13 -2.6
276,634 + OHPLBJKB_00254 0.14 -1.2
276,634 + OHPLBJKB_00254 0.14 +1.4
276,634 + OHPLBJKB_00254 0.14 -1.9
276,634 + OHPLBJKB_00254 0.14 +1.8
276,635 - OHPLBJKB_00254 0.14 +0.1
276,988 - OHPLBJKB_00254 0.62 -1.1
277,105 + OHPLBJKB_00254 0.77 -0.7
277,105 + OHPLBJKB_00254 0.77 +1.1
277,105 + OHPLBJKB_00254 0.77 -0.9
277,106 - OHPLBJKB_00254 0.77 +0.1
277,106 - OHPLBJKB_00254 0.77 -0.5
277,106 - OHPLBJKB_00254 0.77 +1.1
277,106 - OHPLBJKB_00254 0.77 +2.2
277,106 - OHPLBJKB_00254 0.77 -1.8
277,106 - OHPLBJKB_00254 0.77 +0.1
277,111 - OHPLBJKB_00254 0.78 -0.0
277,167 - OHPLBJKB_00254 0.86 +0.9
277,168 + OHPLBJKB_00254 0.86 +0.1
277,168 + OHPLBJKB_00254 0.86 +1.0
277,177 + OHPLBJKB_00254 0.87 +0.9
277,178 - OHPLBJKB_00254 0.87 +1.8
277,271 + -2.0
277,271 + +0.5
277,346 + OHPLBJKB_00255 0.20 -0.4
277,346 + OHPLBJKB_00255 0.20 +0.6
277,346 + OHPLBJKB_00255 0.20 -1.5
277,346 + OHPLBJKB_00255 0.20 -1.2
277,346 + OHPLBJKB_00255 0.20 -0.7
277,347 - OHPLBJKB_00255 0.20 -0.3
277,347 - OHPLBJKB_00255 0.20 +1.0
277,347 - OHPLBJKB_00255 0.20 -0.2
277,376 + OHPLBJKB_00255 0.26 -1.1
277,376 + OHPLBJKB_00255 0.26 -0.7
277,389 + OHPLBJKB_00255 0.29 -1.9
277,476 - OHPLBJKB_00255 0.49 -2.2
277,476 - OHPLBJKB_00255 0.49 +0.3
277,476 - OHPLBJKB_00255 0.49 -0.6
277,494 + OHPLBJKB_00255 0.53 +0.4
277,637 + OHPLBJKB_00255 0.85 -0.8
277,637 + OHPLBJKB_00255 0.85 -0.3
277,638 - OHPLBJKB_00255 0.86 -1.0
277,640 + OHPLBJKB_00255 0.86 +0.6
277,640 + OHPLBJKB_00255 0.86 -0.7
277,679 + +0.2
277,728 + -0.6
277,728 + +1.0
277,729 - -1.5
277,761 - +0.5
277,771 + +0.9
277,771 + -2.1
277,771 + +1.4
277,771 + -1.3
277,771 + -1.6
277,772 - -0.4
277,772 - -1.3
277,772 - +0.3
277,772 - -1.1
277,772 - -0.9
277,772 - -1.5
277,772 - +0.9
277,772 - -1.7
277,773 + +1.0
277,773 + +1.2
277,773 + -0.6
277,773 + -0.0
277,774 - -1.2
277,774 - -0.2
277,774 - -0.6
277,774 - +1.0
277,775 + +0.8
277,775 + -0.5
277,775 + +1.5
277,775 + -0.2
277,776 - +0.1
278,113 + OHPLBJKB_00256 0.17 -0.1
278,113 + OHPLBJKB_00256 0.17 +0.3
278,114 - OHPLBJKB_00256 0.17 -0.0
278,141 - OHPLBJKB_00256 0.18 -1.2
278,141 - OHPLBJKB_00256 0.18 +0.4
278,191 + OHPLBJKB_00256 0.21 -0.9
278,271 + OHPLBJKB_00256 0.26 -0.3

Or see this region's nucleotide sequence