Experiment: BWC1S MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00305 and OHPLBJKB_00306 are separated by 331 nucleotides OHPLBJKB_00306 and OHPLBJKB_00307 are separated by 167 nucleotides
OHPLBJKB_00305: OHPLBJKB_00305 - Putative membrane protein IgaA, at 337,938 to 340,061
_00305
OHPLBJKB_00306: OHPLBJKB_00306 - ADP compounds hydrolase NudE, at 340,393 to 340,953
_00306
OHPLBJKB_00307: OHPLBJKB_00307 - Penicillin-binding protein 1A, at 341,121 to 343,673
_00307
Position (kb) 340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 340.088 kb on - strand at 340.088 kb on - strand at 340.088 kb on - strand at 340.088 kb on - strand at 340.088 kb on - strand at 340.088 kb on - strand at 340.088 kb on - strand at 340.092 kb on - strand at 340.092 kb on - strand at 340.092 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.128 kb on - strand at 340.182 kb on - strand at 340.209 kb on - strand at 340.209 kb on - strand at 340.251 kb on + strand at 340.262 kb on - strand at 340.262 kb on - strand at 340.291 kb on + strand at 340.291 kb on + strand at 340.298 kb on + strand at 340.307 kb on + strand at 340.308 kb on - strand at 340.317 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.382 kb on + strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.383 kb on - strand at 340.407 kb on - strand at 340.589 kb on - strand, within OHPLBJKB_00306 at 340.634 kb on + strand, within OHPLBJKB_00306 at 340.635 kb on - strand, within OHPLBJKB_00306 at 340.680 kb on - strand, within OHPLBJKB_00306 at 340.854 kb on + strand, within OHPLBJKB_00306 at 340.854 kb on + strand, within OHPLBJKB_00306 at 340.854 kb on + strand, within OHPLBJKB_00306 at 340.855 kb on - strand, within OHPLBJKB_00306 at 340.855 kb on - strand, within OHPLBJKB_00306 at 340.855 kb on - strand, within OHPLBJKB_00306 at 340.855 kb on - strand, within OHPLBJKB_00306 at 340.855 kb on - strand, within OHPLBJKB_00306 at 340.896 kb on + strand, within OHPLBJKB_00306 at 340.896 kb on + strand, within OHPLBJKB_00306 at 340.951 kb on + strand at 340.951 kb on + strand at 340.951 kb on + strand at 340.952 kb on - strand at 340.977 kb on + strand at 340.977 kb on + strand at 340.977 kb on + strand at 340.977 kb on + strand at 341.010 kb on - strand at 341.118 kb on + strand at 341.198 kb on + strand at 341.198 kb on + strand at 341.199 kb on - strand at 341.212 kb on + strand at 341.238 kb on - strand at 341.241 kb on + strand at 341.241 kb on + strand at 341.242 kb on - strand at 341.242 kb on - strand at 341.242 kb on - strand at 341.333 kb on + strand at 341.334 kb on - strand at 341.334 kb on - strand at 341.334 kb on - strand at 341.334 kb on - strand at 341.335 kb on + strand at 341.335 kb on + strand at 341.336 kb on - strand at 341.336 kb on - strand at 341.336 kb on - strand at 341.417 kb on + strand, within OHPLBJKB_00307 at 341.417 kb on + strand, within OHPLBJKB_00307 at 341.417 kb on + strand, within OHPLBJKB_00307 at 341.417 kb on + strand, within OHPLBJKB_00307 at 341.429 kb on + strand, within OHPLBJKB_00307 at 341.513 kb on + strand, within OHPLBJKB_00307 at 341.514 kb on - strand, within OHPLBJKB_00307 at 341.514 kb on - strand, within OHPLBJKB_00307 at 341.603 kb on + strand, within OHPLBJKB_00307 at 341.604 kb on - strand, within OHPLBJKB_00307 at 341.609 kb on - strand, within OHPLBJKB_00307 at 341.624 kb on + strand, within OHPLBJKB_00307 at 341.624 kb on + strand, within OHPLBJKB_00307 at 341.625 kb on - strand, within OHPLBJKB_00307 at 341.666 kb on - strand, within OHPLBJKB_00307 at 341.666 kb on - strand, within OHPLBJKB_00307 at 341.691 kb on + strand, within OHPLBJKB_00307 at 341.702 kb on + strand, within OHPLBJKB_00307 at 341.703 kb on - strand, within OHPLBJKB_00307 at 341.757 kb on - strand, within OHPLBJKB_00307 at 341.777 kb on + strand, within OHPLBJKB_00307 at 341.777 kb on + strand, within OHPLBJKB_00307 at 341.812 kb on + strand, within OHPLBJKB_00307 at 341.812 kb on + strand, within OHPLBJKB_00307 at 341.813 kb on - strand, within OHPLBJKB_00307 at 341.813 kb on - strand, within OHPLBJKB_00307 at 341.813 kb on - strand, within OHPLBJKB_00307 at 341.826 kb on - strand, within OHPLBJKB_00307 at 341.844 kb on + strand, within OHPLBJKB_00307 at 341.845 kb on - strand, within OHPLBJKB_00307 at 341.845 kb on - strand, within OHPLBJKB_00307 at 341.900 kb on + strand, within OHPLBJKB_00307 at 341.901 kb on - strand, within OHPLBJKB_00307 at 341.901 kb on - strand, within OHPLBJKB_00307
Per-strain Table
Position Strand Gene LocusTag Fraction BWC1S MOI10 remove 340,088 - +0.4 340,088 - -0.1 340,088 - -0.2 340,088 - -1.5 340,088 - -0.5 340,088 - -1.9 340,088 - +0.0 340,092 - +0.9 340,092 - -0.4 340,092 - -0.0 340,128 - +1.6 340,128 - +0.7 340,128 - -0.9 340,128 - -0.3 340,128 - +1.7 340,128 - -0.6 340,128 - +0.5 340,128 - -2.9 340,128 - -0.3 340,128 - +0.3 340,128 - +0.2 340,128 - +0.0 340,182 - -1.8 340,209 - +0.1 340,209 - -1.6 340,251 + +0.7 340,262 - -0.7 340,262 - +1.1 340,291 + +0.8 340,291 + +0.7 340,298 + -0.1 340,307 + -1.2 340,308 - +2.5 340,317 + -0.8 340,382 + +0.6 340,382 + +1.6 340,382 + +1.3 340,382 + +1.1 340,382 + +0.5 340,382 + +0.5 340,382 + +2.2 340,382 + +1.1 340,382 + +1.5 340,382 + +1.7 340,383 - +2.2 340,383 - +1.9 340,383 - +2.1 340,383 - +2.4 340,383 - +1.8 340,383 - +2.1 340,383 - +1.2 340,383 - +0.6 340,383 - +1.9 340,383 - +2.7 340,407 - +1.8 340,589 - OHPLBJKB_00306 0.35 +2.3 340,634 + OHPLBJKB_00306 0.43 +1.0 340,635 - OHPLBJKB_00306 0.43 +1.3 340,680 - OHPLBJKB_00306 0.51 -0.4 340,854 + OHPLBJKB_00306 0.82 +2.7 340,854 + OHPLBJKB_00306 0.82 +2.4 340,854 + OHPLBJKB_00306 0.82 +2.1 340,855 - OHPLBJKB_00306 0.82 +2.2 340,855 - OHPLBJKB_00306 0.82 +0.1 340,855 - OHPLBJKB_00306 0.82 +2.3 340,855 - OHPLBJKB_00306 0.82 +2.6 340,855 - OHPLBJKB_00306 0.82 +2.4 340,896 + OHPLBJKB_00306 0.90 +0.9 340,896 + OHPLBJKB_00306 0.90 +1.7 340,951 + -0.6 340,951 + -0.2 340,951 + -1.5 340,952 - -0.6 340,977 + +1.4 340,977 + -1.7 340,977 + +1.1 340,977 + -0.5 341,010 - -0.3 341,118 + -0.3 341,198 + -0.2 341,198 + +2.1 341,199 - +0.7 341,212 + -1.8 341,238 - +0.3 341,241 + +0.5 341,241 + -1.2 341,242 - +0.4 341,242 - +0.6 341,242 - +1.6 341,333 + +1.7 341,334 - -1.1 341,334 - +1.7 341,334 - +0.3 341,334 - -0.3 341,335 + +0.5 341,335 + +0.5 341,336 - +0.8 341,336 - -0.9 341,336 - +0.6 341,417 + OHPLBJKB_00307 0.12 -0.3 341,417 + OHPLBJKB_00307 0.12 -0.6 341,417 + OHPLBJKB_00307 0.12 +0.0 341,417 + OHPLBJKB_00307 0.12 +1.7 341,429 + OHPLBJKB_00307 0.12 +1.3 341,513 + OHPLBJKB_00307 0.15 -0.6 341,514 - OHPLBJKB_00307 0.15 -1.7 341,514 - OHPLBJKB_00307 0.15 +0.5 341,603 + OHPLBJKB_00307 0.19 +0.4 341,604 - OHPLBJKB_00307 0.19 +0.9 341,609 - OHPLBJKB_00307 0.19 +0.0 341,624 + OHPLBJKB_00307 0.20 +0.1 341,624 + OHPLBJKB_00307 0.20 +0.4 341,625 - OHPLBJKB_00307 0.20 +1.3 341,666 - OHPLBJKB_00307 0.21 -1.9 341,666 - OHPLBJKB_00307 0.21 -0.6 341,691 + OHPLBJKB_00307 0.22 -0.4 341,702 + OHPLBJKB_00307 0.23 -1.0 341,703 - OHPLBJKB_00307 0.23 +3.6 341,757 - OHPLBJKB_00307 0.25 -0.1 341,777 + OHPLBJKB_00307 0.26 +1.4 341,777 + OHPLBJKB_00307 0.26 -0.1 341,812 + OHPLBJKB_00307 0.27 -1.4 341,812 + OHPLBJKB_00307 0.27 +0.7 341,813 - OHPLBJKB_00307 0.27 -0.9 341,813 - OHPLBJKB_00307 0.27 -0.4 341,813 - OHPLBJKB_00307 0.27 +0.5 341,826 - OHPLBJKB_00307 0.28 +0.4 341,844 + OHPLBJKB_00307 0.28 +2.1 341,845 - OHPLBJKB_00307 0.28 +1.2 341,845 - OHPLBJKB_00307 0.28 +0.2 341,900 + OHPLBJKB_00307 0.31 +1.2 341,901 - OHPLBJKB_00307 0.31 -0.1 341,901 - OHPLBJKB_00307 0.31 +0.1
Or see this region's nucleotide sequence