Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00142

Experiment: BWC1S MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00140 and OHPLBJKB_00141 are separated by 168 nucleotidesOHPLBJKB_00141 and OHPLBJKB_00142 are separated by 45 nucleotidesOHPLBJKB_00142 and OHPLBJKB_00143 are separated by 41 nucleotides OHPLBJKB_00140: OHPLBJKB_00140 - Xylulose kinase, at 152,227 to 153,681 _00140 OHPLBJKB_00141: OHPLBJKB_00141 - Inner membrane protein YiaB, at 153,850 to 154,191 _00141 OHPLBJKB_00142: OHPLBJKB_00142 - Inner membrane protein YiaA, at 154,237 to 154,674 _00142 OHPLBJKB_00143: OHPLBJKB_00143 - O-acetyltransferase WecH, at 154,716 to 155,711 _00143 Position (kb) 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 153.237 kb on + strand, within OHPLBJKB_00140at 153.381 kb on + strand, within OHPLBJKB_00140at 153.382 kb on - strand, within OHPLBJKB_00140at 153.396 kb on + strand, within OHPLBJKB_00140at 153.573 kb on - strandat 153.593 kb on + strandat 153.594 kb on - strandat 153.679 kb on + strandat 153.723 kb on + strandat 153.723 kb on + strandat 153.723 kb on + strandat 153.724 kb on - strandat 153.724 kb on - strandat 153.724 kb on - strandat 153.725 kb on + strandat 153.725 kb on + strandat 153.725 kb on + strandat 153.725 kb on + strandat 153.726 kb on - strandat 153.726 kb on - strandat 153.726 kb on - strandat 153.726 kb on - strandat 153.726 kb on - strandat 153.728 kb on - strandat 153.750 kb on + strandat 153.819 kb on + strandat 153.825 kb on - strandat 153.834 kb on - strandat 153.849 kb on + strandat 153.882 kb on - strandat 153.904 kb on + strand, within OHPLBJKB_00141at 153.968 kb on + strand, within OHPLBJKB_00141at 153.991 kb on + strand, within OHPLBJKB_00141at 153.991 kb on + strand, within OHPLBJKB_00141at 153.991 kb on + strand, within OHPLBJKB_00141at 153.991 kb on + strand, within OHPLBJKB_00141at 153.992 kb on - strand, within OHPLBJKB_00141at 153.992 kb on - strand, within OHPLBJKB_00141at 153.992 kb on - strand, within OHPLBJKB_00141at 153.992 kb on - strand, within OHPLBJKB_00141at 153.997 kb on + strand, within OHPLBJKB_00141at 154.044 kb on + strand, within OHPLBJKB_00141at 154.055 kb on + strand, within OHPLBJKB_00141at 154.056 kb on - strand, within OHPLBJKB_00141at 154.056 kb on - strand, within OHPLBJKB_00141at 154.108 kb on - strand, within OHPLBJKB_00141at 154.113 kb on + strand, within OHPLBJKB_00141at 154.113 kb on + strand, within OHPLBJKB_00141at 154.113 kb on + strand, within OHPLBJKB_00141at 154.114 kb on - strand, within OHPLBJKB_00141at 154.198 kb on + strandat 154.199 kb on - strandat 154.199 kb on - strandat 154.212 kb on - strandat 154.251 kb on - strandat 154.273 kb on - strandat 154.273 kb on - strandat 154.315 kb on + strand, within OHPLBJKB_00142at 154.316 kb on - strand, within OHPLBJKB_00142at 154.316 kb on - strand, within OHPLBJKB_00142at 154.316 kb on - strand, within OHPLBJKB_00142at 154.385 kb on + strand, within OHPLBJKB_00142at 154.386 kb on - strand, within OHPLBJKB_00142at 154.432 kb on + strand, within OHPLBJKB_00142at 154.432 kb on + strand, within OHPLBJKB_00142at 154.443 kb on - strand, within OHPLBJKB_00142at 154.459 kb on + strand, within OHPLBJKB_00142at 154.464 kb on + strand, within OHPLBJKB_00142at 154.464 kb on + strand, within OHPLBJKB_00142at 154.465 kb on - strand, within OHPLBJKB_00142at 154.489 kb on - strand, within OHPLBJKB_00142at 154.512 kb on - strand, within OHPLBJKB_00142at 154.533 kb on - strand, within OHPLBJKB_00142at 154.682 kb on - strandat 154.713 kb on + strandat 154.713 kb on + strandat 154.717 kb on + strandat 154.717 kb on + strandat 154.750 kb on - strandat 154.758 kb on - strandat 154.758 kb on - strandat 154.764 kb on + strandat 154.802 kb on + strandat 154.802 kb on + strandat 154.802 kb on + strandat 154.802 kb on + strandat 154.803 kb on - strandat 154.803 kb on - strandat 154.803 kb on - strandat 154.879 kb on + strand, within OHPLBJKB_00143at 154.879 kb on + strand, within OHPLBJKB_00143at 154.879 kb on + strand, within OHPLBJKB_00143at 154.879 kb on + strand, within OHPLBJKB_00143at 154.879 kb on + strand, within OHPLBJKB_00143at 154.880 kb on - strand, within OHPLBJKB_00143at 154.880 kb on - strand, within OHPLBJKB_00143at 154.880 kb on - strand, within OHPLBJKB_00143at 154.881 kb on + strand, within OHPLBJKB_00143at 154.882 kb on - strand, within OHPLBJKB_00143at 154.882 kb on - strand, within OHPLBJKB_00143at 154.882 kb on - strand, within OHPLBJKB_00143at 154.882 kb on - strand, within OHPLBJKB_00143at 154.884 kb on - strand, within OHPLBJKB_00143at 154.960 kb on - strand, within OHPLBJKB_00143at 154.996 kb on + strand, within OHPLBJKB_00143at 155.003 kb on - strand, within OHPLBJKB_00143at 155.041 kb on + strand, within OHPLBJKB_00143at 155.042 kb on - strand, within OHPLBJKB_00143at 155.043 kb on + strand, within OHPLBJKB_00143at 155.043 kb on + strand, within OHPLBJKB_00143at 155.043 kb on + strand, within OHPLBJKB_00143at 155.043 kb on + strand, within OHPLBJKB_00143at 155.043 kb on + strand, within OHPLBJKB_00143at 155.044 kb on - strand, within OHPLBJKB_00143at 155.044 kb on - strand, within OHPLBJKB_00143at 155.044 kb on - strand, within OHPLBJKB_00143at 155.044 kb on - strand, within OHPLBJKB_00143at 155.044 kb on - strand, within OHPLBJKB_00143at 155.044 kb on - strand, within OHPLBJKB_00143at 155.060 kb on + strand, within OHPLBJKB_00143at 155.063 kb on + strand, within OHPLBJKB_00143at 155.064 kb on - strand, within OHPLBJKB_00143at 155.111 kb on + strand, within OHPLBJKB_00143at 155.111 kb on + strand, within OHPLBJKB_00143at 155.112 kb on - strand, within OHPLBJKB_00143at 155.134 kb on - strand, within OHPLBJKB_00143at 155.134 kb on - strand, within OHPLBJKB_00143at 155.165 kb on - strand, within OHPLBJKB_00143at 155.165 kb on - strand, within OHPLBJKB_00143at 155.167 kb on + strand, within OHPLBJKB_00143at 155.168 kb on - strand, within OHPLBJKB_00143at 155.186 kb on + strand, within OHPLBJKB_00143at 155.186 kb on + strand, within OHPLBJKB_00143at 155.186 kb on + strand, within OHPLBJKB_00143at 155.186 kb on + strand, within OHPLBJKB_00143at 155.187 kb on - strand, within OHPLBJKB_00143at 155.187 kb on - strand, within OHPLBJKB_00143at 155.187 kb on - strand, within OHPLBJKB_00143at 155.187 kb on - strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.188 kb on + strand, within OHPLBJKB_00143at 155.189 kb on - strand, within OHPLBJKB_00143at 155.189 kb on - strand, within OHPLBJKB_00143at 155.189 kb on - strand, within OHPLBJKB_00143at 155.189 kb on - strand, within OHPLBJKB_00143at 155.189 kb on - strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.190 kb on + strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.191 kb on - strand, within OHPLBJKB_00143at 155.272 kb on - strand, within OHPLBJKB_00143at 155.274 kb on + strand, within OHPLBJKB_00143at 155.275 kb on - strand, within OHPLBJKB_00143at 155.359 kb on - strand, within OHPLBJKB_00143at 155.401 kb on - strand, within OHPLBJKB_00143at 155.401 kb on - strand, within OHPLBJKB_00143at 155.420 kb on + strand, within OHPLBJKB_00143at 155.424 kb on + strand, within OHPLBJKB_00143at 155.424 kb on + strand, within OHPLBJKB_00143at 155.434 kb on + strand, within OHPLBJKB_00143at 155.434 kb on + strand, within OHPLBJKB_00143at 155.435 kb on - strand, within OHPLBJKB_00143at 155.435 kb on - strand, within OHPLBJKB_00143at 155.435 kb on - strand, within OHPLBJKB_00143at 155.435 kb on - strand, within OHPLBJKB_00143at 155.435 kb on - strand, within OHPLBJKB_00143at 155.469 kb on + strand, within OHPLBJKB_00143at 155.469 kb on + strand, within OHPLBJKB_00143at 155.470 kb on - strand, within OHPLBJKB_00143at 155.470 kb on - strand, within OHPLBJKB_00143at 155.612 kb on + strandat 155.613 kb on - strandat 155.613 kb on - strandat 155.629 kb on + strandat 155.629 kb on + strandat 155.629 kb on + strandat 155.629 kb on + strandat 155.630 kb on - strandat 155.661 kb on + strandat 155.670 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI10
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153,237 + OHPLBJKB_00140 0.69 -0.4
153,381 + OHPLBJKB_00140 0.79 +0.0
153,382 - OHPLBJKB_00140 0.79 -0.0
153,396 + OHPLBJKB_00140 0.80 +0.7
153,573 - -2.7
153,593 + -1.7
153,594 - -0.6
153,679 + +0.6
153,723 + +0.4
153,723 + +1.1
153,723 + +0.6
153,724 - +0.4
153,724 - -0.8
153,724 - -0.6
153,725 + -1.2
153,725 + -2.2
153,725 + +0.7
153,725 + +0.7
153,726 - -0.5
153,726 - -0.9
153,726 - +1.6
153,726 - +0.1
153,726 - -2.4
153,728 - +0.1
153,750 + -0.9
153,819 + +0.1
153,825 - -0.1
153,834 - -0.5
153,849 + -1.6
153,882 - +0.2
153,904 + OHPLBJKB_00141 0.16 +0.9
153,968 + OHPLBJKB_00141 0.35 -1.2
153,991 + OHPLBJKB_00141 0.41 -1.0
153,991 + OHPLBJKB_00141 0.41 -1.1
153,991 + OHPLBJKB_00141 0.41 +1.1
153,991 + OHPLBJKB_00141 0.41 -0.7
153,992 - OHPLBJKB_00141 0.42 +0.5
153,992 - OHPLBJKB_00141 0.42 +0.1
153,992 - OHPLBJKB_00141 0.42 +0.1
153,992 - OHPLBJKB_00141 0.42 +0.8
153,997 + OHPLBJKB_00141 0.43 +0.4
154,044 + OHPLBJKB_00141 0.57 +0.6
154,055 + OHPLBJKB_00141 0.60 +3.2
154,056 - OHPLBJKB_00141 0.60 -0.1
154,056 - OHPLBJKB_00141 0.60 -0.1
154,108 - OHPLBJKB_00141 0.75 -1.0
154,113 + OHPLBJKB_00141 0.77 -1.5
154,113 + OHPLBJKB_00141 0.77 -1.6
154,113 + OHPLBJKB_00141 0.77 +0.9
154,114 - OHPLBJKB_00141 0.77 -1.0
154,198 + -1.5
154,199 - -1.7
154,199 - +0.3
154,212 - -0.7
154,251 - -0.9
154,273 - +0.4
154,273 - +2.5
154,315 + OHPLBJKB_00142 0.18 -2.3
154,316 - OHPLBJKB_00142 0.18 -0.1
154,316 - OHPLBJKB_00142 0.18 +0.9
154,316 - OHPLBJKB_00142 0.18 -1.5
154,385 + OHPLBJKB_00142 0.34 +0.8
154,386 - OHPLBJKB_00142 0.34 +0.4
154,432 + OHPLBJKB_00142 0.45 +1.0
154,432 + OHPLBJKB_00142 0.45 +2.4
154,443 - OHPLBJKB_00142 0.47 +1.8
154,459 + OHPLBJKB_00142 0.51 -0.2
154,464 + OHPLBJKB_00142 0.52 +0.6
154,464 + OHPLBJKB_00142 0.52 -1.1
154,465 - OHPLBJKB_00142 0.52 -2.0
154,489 - OHPLBJKB_00142 0.58 -0.4
154,512 - OHPLBJKB_00142 0.63 +0.1
154,533 - OHPLBJKB_00142 0.68 -0.2
154,682 - +1.2
154,713 + -1.4
154,713 + +0.6
154,717 + -1.5
154,717 + +1.6
154,750 - -0.4
154,758 - -1.0
154,758 - -2.5
154,764 + -1.0
154,802 + +0.3
154,802 + +0.7
154,802 + -0.5
154,802 + -0.8
154,803 - -1.6
154,803 - +1.1
154,803 - -1.6
154,879 + OHPLBJKB_00143 0.16 +0.1
154,879 + OHPLBJKB_00143 0.16 +0.4
154,879 + OHPLBJKB_00143 0.16 +0.0
154,879 + OHPLBJKB_00143 0.16 -2.1
154,879 + OHPLBJKB_00143 0.16 +2.5
154,880 - OHPLBJKB_00143 0.16 +0.8
154,880 - OHPLBJKB_00143 0.16 -0.2
154,880 - OHPLBJKB_00143 0.16 -1.6
154,881 + OHPLBJKB_00143 0.17 -0.8
154,882 - OHPLBJKB_00143 0.17 +0.1
154,882 - OHPLBJKB_00143 0.17 +0.2
154,882 - OHPLBJKB_00143 0.17 -0.6
154,882 - OHPLBJKB_00143 0.17 -0.4
154,884 - OHPLBJKB_00143 0.17 -1.1
154,960 - OHPLBJKB_00143 0.24 -0.1
154,996 + OHPLBJKB_00143 0.28 -1.5
155,003 - OHPLBJKB_00143 0.29 +0.9
155,041 + OHPLBJKB_00143 0.33 -2.3
155,042 - OHPLBJKB_00143 0.33 -0.1
155,043 + OHPLBJKB_00143 0.33 -0.1
155,043 + OHPLBJKB_00143 0.33 +0.2
155,043 + OHPLBJKB_00143 0.33 +0.0
155,043 + OHPLBJKB_00143 0.33 +0.6
155,043 + OHPLBJKB_00143 0.33 +1.0
155,044 - OHPLBJKB_00143 0.33 -0.1
155,044 - OHPLBJKB_00143 0.33 -0.0
155,044 - OHPLBJKB_00143 0.33 +0.6
155,044 - OHPLBJKB_00143 0.33 -0.6
155,044 - OHPLBJKB_00143 0.33 +1.1
155,044 - OHPLBJKB_00143 0.33 -1.0
155,060 + OHPLBJKB_00143 0.35 -0.7
155,063 + OHPLBJKB_00143 0.35 +1.1
155,064 - OHPLBJKB_00143 0.35 -0.3
155,111 + OHPLBJKB_00143 0.40 -1.4
155,111 + OHPLBJKB_00143 0.40 -1.0
155,112 - OHPLBJKB_00143 0.40 -0.2
155,134 - OHPLBJKB_00143 0.42 -1.9
155,134 - OHPLBJKB_00143 0.42 -0.5
155,165 - OHPLBJKB_00143 0.45 -1.1
155,165 - OHPLBJKB_00143 0.45 +0.6
155,167 + OHPLBJKB_00143 0.45 -1.0
155,168 - OHPLBJKB_00143 0.45 -1.0
155,186 + OHPLBJKB_00143 0.47 -0.1
155,186 + OHPLBJKB_00143 0.47 +1.7
155,186 + OHPLBJKB_00143 0.47 -1.7
155,186 + OHPLBJKB_00143 0.47 -0.3
155,187 - OHPLBJKB_00143 0.47 -0.9
155,187 - OHPLBJKB_00143 0.47 +0.4
155,187 - OHPLBJKB_00143 0.47 +2.0
155,187 - OHPLBJKB_00143 0.47 -1.1
155,188 + OHPLBJKB_00143 0.47 -1.9
155,188 + OHPLBJKB_00143 0.47 -0.2
155,188 + OHPLBJKB_00143 0.47 -1.0
155,188 + OHPLBJKB_00143 0.47 +0.2
155,188 + OHPLBJKB_00143 0.47 -0.4
155,188 + OHPLBJKB_00143 0.47 +0.2
155,188 + OHPLBJKB_00143 0.47 +0.3
155,189 - OHPLBJKB_00143 0.47 +2.0
155,189 - OHPLBJKB_00143 0.47 -0.9
155,189 - OHPLBJKB_00143 0.47 -1.3
155,189 - OHPLBJKB_00143 0.47 -1.1
155,189 - OHPLBJKB_00143 0.47 +0.0
155,190 + OHPLBJKB_00143 0.48 +0.1
155,190 + OHPLBJKB_00143 0.48 +1.5
155,190 + OHPLBJKB_00143 0.48 +0.3
155,190 + OHPLBJKB_00143 0.48 +0.9
155,190 + OHPLBJKB_00143 0.48 -1.1
155,190 + OHPLBJKB_00143 0.48 -1.9
155,190 + OHPLBJKB_00143 0.48 +0.4
155,190 + OHPLBJKB_00143 0.48 +0.2
155,190 + OHPLBJKB_00143 0.48 -1.5
155,190 + OHPLBJKB_00143 0.48 +0.4
155,190 + OHPLBJKB_00143 0.48 +0.4
155,190 + OHPLBJKB_00143 0.48 +0.1
155,190 + OHPLBJKB_00143 0.48 +0.9
155,190 + OHPLBJKB_00143 0.48 +0.8
155,190 + OHPLBJKB_00143 0.48 -1.3
155,191 - OHPLBJKB_00143 0.48 -0.8
155,191 - OHPLBJKB_00143 0.48 -0.5
155,191 - OHPLBJKB_00143 0.48 -0.0
155,191 - OHPLBJKB_00143 0.48 -0.2
155,191 - OHPLBJKB_00143 0.48 -2.1
155,191 - OHPLBJKB_00143 0.48 -0.5
155,191 - OHPLBJKB_00143 0.48 +1.3
155,191 - OHPLBJKB_00143 0.48 -2.7
155,191 - OHPLBJKB_00143 0.48 +1.3
155,191 - OHPLBJKB_00143 0.48 +0.2
155,191 - OHPLBJKB_00143 0.48 -0.3
155,272 - OHPLBJKB_00143 0.56 -0.2
155,274 + OHPLBJKB_00143 0.56 +1.1
155,275 - OHPLBJKB_00143 0.56 -1.9
155,359 - OHPLBJKB_00143 0.65 +2.0
155,401 - OHPLBJKB_00143 0.69 -3.2
155,401 - OHPLBJKB_00143 0.69 +0.2
155,420 + OHPLBJKB_00143 0.71 +0.2
155,424 + OHPLBJKB_00143 0.71 +0.5
155,424 + OHPLBJKB_00143 0.71 -1.3
155,434 + OHPLBJKB_00143 0.72 -0.2
155,434 + OHPLBJKB_00143 0.72 +1.1
155,435 - OHPLBJKB_00143 0.72 -0.1
155,435 - OHPLBJKB_00143 0.72 -0.9
155,435 - OHPLBJKB_00143 0.72 -1.2
155,435 - OHPLBJKB_00143 0.72 -1.2
155,435 - OHPLBJKB_00143 0.72 -0.6
155,469 + OHPLBJKB_00143 0.76 -0.4
155,469 + OHPLBJKB_00143 0.76 -0.4
155,470 - OHPLBJKB_00143 0.76 -0.0
155,470 - OHPLBJKB_00143 0.76 +1.2
155,612 + +0.3
155,613 - -1.1
155,613 - +0.1
155,629 + -0.6
155,629 + -0.3
155,629 + +0.6
155,629 + -1.4
155,630 - +1.5
155,661 + +0.6
155,670 + +0.6

Or see this region's nucleotide sequence