Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24420

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_24410 and NOLOHH_24415 are separated by 120 nucleotidesNOLOHH_24415 and NOLOHH_24420 are separated by 75 nucleotides NOLOHH_24410: NOLOHH_24410 - PapC/FimD family outer membrane usher protein, at 27,106 to 29,616 _24410 NOLOHH_24415: NOLOHH_24415 - fimbrial protein, at 29,737 to 30,324 _24415 NOLOHH_24420: NOLOHH_24420 - F7-2 fimbrial protein, at 30,400 to 30,927 _24420 Position (kb) 30 31Strain fitness (log2 ratio) -1 0 1at 29.454 kb on + strandat 29.687 kb on - strandat 29.690 kb on - strandat 29.854 kb on + strand, within NOLOHH_24415at 29.894 kb on + strand, within NOLOHH_24415at 30.006 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.151 kb on - strand, within NOLOHH_24415at 30.329 kb on + strandat 30.336 kb on + strandat 30.377 kb on - strandat 30.408 kb on - strandat 30.483 kb on + strand, within NOLOHH_24420at 30.483 kb on + strand, within NOLOHH_24420at 30.489 kb on - strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.606 kb on + strand, within NOLOHH_24420at 30.639 kb on + strand, within NOLOHH_24420at 30.640 kb on - strand, within NOLOHH_24420at 30.700 kb on - strand, within NOLOHH_24420at 30.827 kb on - strand, within NOLOHH_24420at 31.003 kb on - strandat 31.451 kb on + strandat 31.562 kb on + strandat 31.562 kb on + strandat 31.563 kb on - strandat 31.563 kb on - strandat 31.568 kb on + strandat 31.573 kb on - strandat 31.641 kb on + strandat 31.641 kb on + strandat 31.847 kb on + strandat 31.879 kb on + strandat 31.879 kb on + strandat 31.879 kb on + strandat 31.883 kb on + strandat 31.912 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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29,454 + +0.2
29,687 - +1.2
29,690 - -0.1
29,854 + NOLOHH_24415 0.20 +0.5
29,894 + NOLOHH_24415 0.27 -0.2
30,006 - NOLOHH_24415 0.46 +0.9
30,089 - NOLOHH_24415 0.60 -0.1
30,089 - NOLOHH_24415 0.60 -0.8
30,151 - NOLOHH_24415 0.70 -0.5
30,329 + -1.4
30,336 + -0.2
30,377 - +0.4
30,408 - -0.8
30,483 + NOLOHH_24420 0.16 -0.1
30,483 + NOLOHH_24420 0.16 -0.4
30,489 - NOLOHH_24420 0.17 +0.2
30,580 + NOLOHH_24420 0.34 +0.6
30,580 + NOLOHH_24420 0.34 -0.8
30,581 - NOLOHH_24420 0.34 +0.7
30,581 - NOLOHH_24420 0.34 +0.8
30,581 - NOLOHH_24420 0.34 +0.2
30,604 - NOLOHH_24420 0.39 +0.1
30,604 - NOLOHH_24420 0.39 -0.4
30,606 + NOLOHH_24420 0.39 +0.2
30,639 + NOLOHH_24420 0.45 -0.7
30,640 - NOLOHH_24420 0.45 -0.7
30,700 - NOLOHH_24420 0.57 +0.2
30,827 - NOLOHH_24420 0.81 -0.7
31,003 - +0.2
31,451 + +1.2
31,562 + +0.7
31,562 + +0.2
31,563 - -0.8
31,563 - +1.7
31,568 + +0.2
31,573 - +0.9
31,641 + +0.6
31,641 + -0.4
31,847 + +0.4
31,879 + -0.3
31,879 + -1.0
31,879 + -0.7
31,883 + +0.1
31,912 + +1.4

Or see this region's nucleotide sequence