Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potI and potH overlap by 4 nucleotides potH and potG are separated by 9 nucleotides potG and potF are separated by 94 nucleotides
NOLOHH_22315: potI - putrescine ABC transporter permease PotI, at 4,405,135 to 4,405,980
potI
NOLOHH_22320: potH - putrescine ABC transporter permease PotH, at 4,405,977 to 4,406,930
potH
NOLOHH_22325: potG - putrescine ABC transporter ATP-binding subunit PotG, at 4,406,940 to 4,408,073
potG
NOLOHH_22330: potF - spermidine/putrescine ABC transporter substrate-binding protein PotF, at 4,408,168 to 4,409,280
potF
Position (kb)
4406
4407
4408
4409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4406.091 kb on - strand, within potH at 4406.241 kb on - strand, within potH at 4406.369 kb on - strand, within potH at 4406.461 kb on - strand, within potH at 4406.461 kb on - strand, within potH at 4406.523 kb on + strand, within potH at 4406.524 kb on - strand, within potH at 4406.524 kb on - strand, within potH at 4406.526 kb on + strand, within potH at 4406.527 kb on - strand, within potH at 4406.531 kb on + strand, within potH at 4406.531 kb on + strand, within potH at 4406.549 kb on + strand, within potH at 4406.550 kb on - strand, within potH at 4406.622 kb on + strand, within potH at 4406.635 kb on + strand, within potH at 4406.635 kb on + strand, within potH at 4406.635 kb on + strand, within potH at 4406.687 kb on + strand, within potH at 4406.735 kb on - strand, within potH at 4406.822 kb on - strand, within potH at 4406.882 kb on + strand at 4406.924 kb on + strand at 4406.941 kb on + strand at 4406.942 kb on - strand at 4407.135 kb on - strand, within potG at 4407.298 kb on - strand, within potG at 4407.298 kb on - strand, within potG at 4407.340 kb on + strand, within potG at 4407.362 kb on - strand, within potG at 4407.561 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.758 kb on + strand, within potG at 4407.791 kb on + strand, within potG at 4407.791 kb on + strand, within potG at 4407.808 kb on + strand, within potG at 4407.846 kb on + strand, within potG at 4407.846 kb on + strand, within potG at 4407.846 kb on + strand, within potG at 4407.946 kb on + strand, within potG at 4407.947 kb on - strand, within potG at 4407.947 kb on - strand, within potG at 4407.947 kb on - strand, within potG at 4407.989 kb on - strand at 4408.156 kb on + strand at 4408.157 kb on - strand at 4408.157 kb on - strand at 4408.157 kb on - strand at 4408.157 kb on - strand at 4408.340 kb on + strand, within potF at 4408.341 kb on - strand, within potF at 4408.388 kb on + strand, within potF at 4408.403 kb on + strand, within potF at 4408.881 kb on + strand, within potF at 4408.882 kb on - strand, within potF at 4408.884 kb on - strand, within potF at 4409.066 kb on - strand, within potF
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 4,406,091 - potH NOLOHH_22320 0.12 +0.1 4,406,241 - potH NOLOHH_22320 0.28 -0.2 4,406,369 - potH NOLOHH_22320 0.41 -0.5 4,406,461 - potH NOLOHH_22320 0.51 +1.1 4,406,461 - potH NOLOHH_22320 0.51 +0.3 4,406,523 + potH NOLOHH_22320 0.57 +0.6 4,406,524 - potH NOLOHH_22320 0.57 +1.1 4,406,524 - potH NOLOHH_22320 0.57 -2.9 4,406,526 + potH NOLOHH_22320 0.58 +0.1 4,406,527 - potH NOLOHH_22320 0.58 +1.1 4,406,531 + potH NOLOHH_22320 0.58 +2.1 4,406,531 + potH NOLOHH_22320 0.58 -0.3 4,406,549 + potH NOLOHH_22320 0.60 +2.7 4,406,550 - potH NOLOHH_22320 0.60 -0.5 4,406,622 + potH NOLOHH_22320 0.68 +0.1 4,406,635 + potH NOLOHH_22320 0.69 +0.1 4,406,635 + potH NOLOHH_22320 0.69 +2.1 4,406,635 + potH NOLOHH_22320 0.69 +1.1 4,406,687 + potH NOLOHH_22320 0.74 +0.5 4,406,735 - potH NOLOHH_22320 0.79 +0.5 4,406,822 - potH NOLOHH_22320 0.89 +2.7 4,406,882 + -0.3 4,406,924 + +1.1 4,406,941 + +0.1 4,406,942 - +2.4 4,407,135 - potG NOLOHH_22325 0.17 -0.5 4,407,298 - potG NOLOHH_22325 0.32 +1.1 4,407,298 - potG NOLOHH_22325 0.32 +0.7 4,407,340 + potG NOLOHH_22325 0.35 +1.1 4,407,362 - potG NOLOHH_22325 0.37 +0.1 4,407,561 + potG NOLOHH_22325 0.55 -0.1 4,407,564 + potG NOLOHH_22325 0.55 -1.1 4,407,564 + potG NOLOHH_22325 0.55 -0.5 4,407,564 + potG NOLOHH_22325 0.55 +0.3 4,407,564 + potG NOLOHH_22325 0.55 +1.7 4,407,758 + potG NOLOHH_22325 0.72 -0.2 4,407,791 + potG NOLOHH_22325 0.75 +2.7 4,407,791 + potG NOLOHH_22325 0.75 -1.7 4,407,808 + potG NOLOHH_22325 0.77 +1.1 4,407,846 + potG NOLOHH_22325 0.80 -0.5 4,407,846 + potG NOLOHH_22325 0.80 +0.6 4,407,846 + potG NOLOHH_22325 0.80 -0.5 4,407,946 + potG NOLOHH_22325 0.89 -0.6 4,407,947 - potG NOLOHH_22325 0.89 +0.5 4,407,947 - potG NOLOHH_22325 0.89 +1.1 4,407,947 - potG NOLOHH_22325 0.89 +0.6 4,407,989 - -0.7 4,408,156 + +0.1 4,408,157 - -1.2 4,408,157 - +0.5 4,408,157 - +0.6 4,408,157 - -0.9 4,408,340 + potF NOLOHH_22330 0.15 +1.1 4,408,341 - potF NOLOHH_22330 0.16 -0.5 4,408,388 + potF NOLOHH_22330 0.20 +1.1 4,408,403 + potF NOLOHH_22330 0.21 -0.7 4,408,881 + potF NOLOHH_22330 0.64 +1.1 4,408,882 - potF NOLOHH_22330 0.64 -0.5 4,408,884 - potF NOLOHH_22330 0.64 +1.1 4,409,066 - potF NOLOHH_22330 0.81 +0.5
Or see this region's nucleotide sequence