Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycgM and ycgL are separated by 71 nucleotides ycgL and NOLOHH_20790 are separated by 241 nucleotides NOLOHH_20790 and ycgJ are separated by 119 nucleotides
NOLOHH_20780: ycgM - fumarylacetoacetate hydrolase family protein, at 4,090,410 to 4,091,069
ycgM
NOLOHH_20785: ycgL - Protein YcgL, at 4,091,141 to 4,091,434
ycgL
NOLOHH_20790: NOLOHH_20790 - inhibitor of g-type lysozyme, at 4,091,676 to 4,092,077
_20790
NOLOHH_20795: ycgJ - Uncharacterized protein YcgJ, at 4,092,197 to 4,092,565
ycgJ
Position (kb)
4091
4092
4093 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4090.980 kb on - strand, within ycgM at 4090.980 kb on - strand, within ycgM at 4090.983 kb on - strand, within ycgM at 4090.994 kb on - strand, within ycgM at 4090.994 kb on - strand, within ycgM at 4091.014 kb on - strand at 4091.066 kb on - strand at 4091.070 kb on - strand at 4091.070 kb on - strand at 4091.070 kb on - strand at 4091.070 kb on - strand at 4091.070 kb on - strand at 4091.120 kb on - strand at 4091.227 kb on - strand, within ycgL at 4091.388 kb on - strand, within ycgL at 4091.544 kb on + strand at 4091.545 kb on - strand at 4091.546 kb on + strand at 4091.547 kb on - strand at 4091.547 kb on - strand at 4091.547 kb on - strand at 4091.547 kb on - strand at 4091.551 kb on - strand at 4091.551 kb on - strand at 4091.551 kb on - strand at 4091.830 kb on - strand, within NOLOHH_20790 at 4091.830 kb on - strand, within NOLOHH_20790 at 4091.830 kb on - strand, within NOLOHH_20790 at 4091.830 kb on - strand, within NOLOHH_20790 at 4091.830 kb on - strand, within NOLOHH_20790 at 4091.830 kb on - strand, within NOLOHH_20790 at 4091.832 kb on - strand, within NOLOHH_20790 at 4091.839 kb on - strand, within NOLOHH_20790 at 4091.892 kb on - strand, within NOLOHH_20790 at 4091.995 kb on - strand, within NOLOHH_20790 at 4092.045 kb on - strand at 4092.187 kb on - strand at 4092.187 kb on - strand at 4092.212 kb on - strand at 4092.302 kb on - strand, within ycgJ at 4092.440 kb on - strand, within ycgJ at 4092.560 kb on - strand at 4092.599 kb on - strand at 4092.599 kb on - strand at 4092.669 kb on - strand at 4092.692 kb on - strand at 4092.697 kb on - strand at 4092.965 kb on + strand at 4093.023 kb on + strand at 4093.023 kb on + strand at 4093.024 kb on - strand at 4093.025 kb on + strand at 4093.067 kb on + strand at 4093.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 4,090,980 - ycgM NOLOHH_20780 0.86 +2.0 4,090,980 - ycgM NOLOHH_20780 0.86 -0.6 4,090,983 - ycgM NOLOHH_20780 0.87 -0.1 4,090,994 - ycgM NOLOHH_20780 0.88 +0.4 4,090,994 - ycgM NOLOHH_20780 0.88 +0.0 4,091,014 - +1.0 4,091,066 - +1.0 4,091,070 - +0.0 4,091,070 - +0.4 4,091,070 - -0.7 4,091,070 - -1.0 4,091,070 - +0.4 4,091,120 - +0.4 4,091,227 - ycgL NOLOHH_20785 0.29 -0.3 4,091,388 - ycgL NOLOHH_20785 0.84 -0.6 4,091,544 + +0.0 4,091,545 - +0.0 4,091,546 + -0.6 4,091,547 - +0.5 4,091,547 - +0.6 4,091,547 - +1.8 4,091,547 - -0.7 4,091,551 - +1.0 4,091,551 - -0.3 4,091,551 - +1.0 4,091,830 - NOLOHH_20790 0.38 +0.0 4,091,830 - NOLOHH_20790 0.38 +0.4 4,091,830 - NOLOHH_20790 0.38 +1.3 4,091,830 - NOLOHH_20790 0.38 +2.0 4,091,830 - NOLOHH_20790 0.38 +1.0 4,091,830 - NOLOHH_20790 0.38 +1.0 4,091,832 - NOLOHH_20790 0.39 -0.6 4,091,839 - NOLOHH_20790 0.41 -1.8 4,091,892 - NOLOHH_20790 0.54 +1.0 4,091,995 - NOLOHH_20790 0.79 +0.0 4,092,045 - +1.0 4,092,187 - -0.6 4,092,187 - +0.0 4,092,212 - +1.4 4,092,302 - ycgJ NOLOHH_20795 0.28 -0.4 4,092,440 - ycgJ NOLOHH_20795 0.66 +2.0 4,092,560 - -0.6 4,092,599 - -1.0 4,092,599 - +0.2 4,092,669 - -1.2 4,092,692 - -0.3 4,092,697 - +0.4 4,092,965 + -0.3 4,093,023 + -1.8 4,093,023 + -2.0 4,093,024 - -1.0 4,093,025 + +0.0 4,093,067 + +1.0 4,093,067 + -0.4
Or see this region's nucleotide sequence