Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20790

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycgM and ycgL are separated by 71 nucleotidesycgL and NOLOHH_20790 are separated by 241 nucleotidesNOLOHH_20790 and ycgJ are separated by 119 nucleotides NOLOHH_20780: ycgM - fumarylacetoacetate hydrolase family protein, at 4,090,410 to 4,091,069 ycgM NOLOHH_20785: ycgL - Protein YcgL, at 4,091,141 to 4,091,434 ycgL NOLOHH_20790: NOLOHH_20790 - inhibitor of g-type lysozyme, at 4,091,676 to 4,092,077 _20790 NOLOHH_20795: ycgJ - Uncharacterized protein YcgJ, at 4,092,197 to 4,092,565 ycgJ Position (kb) 4091 4092 4093Strain fitness (log2 ratio) -2 -1 0 1 2at 4090.980 kb on - strand, within ycgMat 4090.980 kb on - strand, within ycgMat 4090.983 kb on - strand, within ycgMat 4090.994 kb on - strand, within ycgMat 4090.994 kb on - strand, within ycgMat 4091.014 kb on - strandat 4091.066 kb on - strandat 4091.070 kb on - strandat 4091.070 kb on - strandat 4091.070 kb on - strandat 4091.070 kb on - strandat 4091.070 kb on - strandat 4091.120 kb on - strandat 4091.227 kb on - strand, within ycgLat 4091.388 kb on - strand, within ycgLat 4091.544 kb on + strandat 4091.545 kb on - strandat 4091.546 kb on + strandat 4091.547 kb on - strandat 4091.547 kb on - strandat 4091.547 kb on - strandat 4091.547 kb on - strandat 4091.551 kb on - strandat 4091.551 kb on - strandat 4091.551 kb on - strandat 4091.830 kb on - strand, within NOLOHH_20790at 4091.830 kb on - strand, within NOLOHH_20790at 4091.830 kb on - strand, within NOLOHH_20790at 4091.830 kb on - strand, within NOLOHH_20790at 4091.830 kb on - strand, within NOLOHH_20790at 4091.830 kb on - strand, within NOLOHH_20790at 4091.832 kb on - strand, within NOLOHH_20790at 4091.839 kb on - strand, within NOLOHH_20790at 4091.892 kb on - strand, within NOLOHH_20790at 4091.995 kb on - strand, within NOLOHH_20790at 4092.045 kb on - strandat 4092.187 kb on - strandat 4092.187 kb on - strandat 4092.212 kb on - strandat 4092.302 kb on - strand, within ycgJat 4092.440 kb on - strand, within ycgJat 4092.560 kb on - strandat 4092.599 kb on - strandat 4092.599 kb on - strandat 4092.669 kb on - strandat 4092.692 kb on - strandat 4092.697 kb on - strandat 4092.965 kb on + strandat 4093.023 kb on + strandat 4093.023 kb on + strandat 4093.024 kb on - strandat 4093.025 kb on + strandat 4093.067 kb on + strandat 4093.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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4,090,980 - ycgM NOLOHH_20780 0.86 +2.0
4,090,980 - ycgM NOLOHH_20780 0.86 -0.6
4,090,983 - ycgM NOLOHH_20780 0.87 -0.1
4,090,994 - ycgM NOLOHH_20780 0.88 +0.4
4,090,994 - ycgM NOLOHH_20780 0.88 +0.0
4,091,014 - +1.0
4,091,066 - +1.0
4,091,070 - +0.0
4,091,070 - +0.4
4,091,070 - -0.7
4,091,070 - -1.0
4,091,070 - +0.4
4,091,120 - +0.4
4,091,227 - ycgL NOLOHH_20785 0.29 -0.3
4,091,388 - ycgL NOLOHH_20785 0.84 -0.6
4,091,544 + +0.0
4,091,545 - +0.0
4,091,546 + -0.6
4,091,547 - +0.5
4,091,547 - +0.6
4,091,547 - +1.8
4,091,547 - -0.7
4,091,551 - +1.0
4,091,551 - -0.3
4,091,551 - +1.0
4,091,830 - NOLOHH_20790 0.38 +0.0
4,091,830 - NOLOHH_20790 0.38 +0.4
4,091,830 - NOLOHH_20790 0.38 +1.3
4,091,830 - NOLOHH_20790 0.38 +2.0
4,091,830 - NOLOHH_20790 0.38 +1.0
4,091,830 - NOLOHH_20790 0.38 +1.0
4,091,832 - NOLOHH_20790 0.39 -0.6
4,091,839 - NOLOHH_20790 0.41 -1.8
4,091,892 - NOLOHH_20790 0.54 +1.0
4,091,995 - NOLOHH_20790 0.79 +0.0
4,092,045 - +1.0
4,092,187 - -0.6
4,092,187 - +0.0
4,092,212 - +1.4
4,092,302 - ycgJ NOLOHH_20795 0.28 -0.4
4,092,440 - ycgJ NOLOHH_20795 0.66 +2.0
4,092,560 - -0.6
4,092,599 - -1.0
4,092,599 - +0.2
4,092,669 - -1.2
4,092,692 - -0.3
4,092,697 - +0.4
4,092,965 + -0.3
4,093,023 + -1.8
4,093,023 + -2.0
4,093,024 - -1.0
4,093,025 + +0.0
4,093,067 + +1.0
4,093,067 + -0.4

Or see this region's nucleotide sequence