Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20215

Experiment: TP7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyciT and osmB are separated by 268 nucleotidesosmB and yciH are separated by 125 nucleotidesyciH and pyrF overlap by 1 nucleotidespyrF and lapB are separated by 132 nucleotides NOLOHH_20200: yciT - DNA-binding transcriptional regulator YciT, at 3,979,495 to 3,980,244 yciT NOLOHH_20205: osmB - osmotically-inducible lipoprotein OsmB, at 3,980,513 to 3,980,731 osmB NOLOHH_20210: yciH - stress response translation initiation inhibitor YciH, at 3,980,857 to 3,981,183 yciH NOLOHH_20215: pyrF - orotidine-5'-phosphate decarboxylase, at 3,981,183 to 3,981,980 pyrF NOLOHH_20220: lapB - lipopolysaccharide assembly protein LapB, at 3,982,113 to 3,983,282 lapB Position (kb) 3981 3982Strain fitness (log2 ratio) -1 0 1 2at 3980.463 kb on + strandat 3980.478 kb on + strandat 3980.677 kb on + strand, within osmBat 3980.677 kb on + strand, within osmBat 3980.764 kb on + strandat 3981.110 kb on - strand, within yciHat 3981.110 kb on - strand, within yciHat 3981.270 kb on - strand, within pyrFat 3981.270 kb on - strand, within pyrFat 3981.270 kb on - strand, within pyrFat 3981.272 kb on - strand, within pyrFat 3981.272 kb on - strand, within pyrFat 3981.272 kb on - strand, within pyrFat 3981.309 kb on - strand, within pyrFat 3981.473 kb on - strand, within pyrFat 3981.771 kb on - strand, within pyrFat 3981.968 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP7
remove
3,980,463 + +0.1
3,980,478 + +0.1
3,980,677 + osmB NOLOHH_20205 0.75 +2.1
3,980,677 + osmB NOLOHH_20205 0.75 -1.5
3,980,764 + -1.2
3,981,110 - yciH NOLOHH_20210 0.77 -1.2
3,981,110 - yciH NOLOHH_20210 0.77 +2.1
3,981,270 - pyrF NOLOHH_20215 0.11 -0.1
3,981,270 - pyrF NOLOHH_20215 0.11 +1.1
3,981,270 - pyrF NOLOHH_20215 0.11 -0.0
3,981,272 - pyrF NOLOHH_20215 0.11 -0.5
3,981,272 - pyrF NOLOHH_20215 0.11 -1.2
3,981,272 - pyrF NOLOHH_20215 0.11 +0.8
3,981,309 - pyrF NOLOHH_20215 0.16 -1.7
3,981,473 - pyrF NOLOHH_20215 0.36 +0.7
3,981,771 - pyrF NOLOHH_20215 0.74 +0.1
3,981,968 - +0.1

Or see this region's nucleotide sequence