Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15710

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwcaJ and wzxC are separated by 1 nucleotideswzxC and wcaK are separated by 179 nucleotides NOLOHH_15705: wcaJ - undecaprenyl-phosphate glucose phosphotransferase, at 3,092,620 to 3,094,014 wcaJ NOLOHH_15710: wzxC - colanic acid undecaprenyl disphosphate flippase WzxC, at 3,094,016 to 3,095,494 wzxC NOLOHH_15715: wcaK - colanic acid biosynthesis pyruvyl transferase WcaK, at 3,095,674 to 3,096,954 wcaK Position (kb) 3094 3095 3096Strain fitness (log2 ratio) -2 -1 0 1 2at 3093.044 kb on - strand, within wcaJat 3093.045 kb on + strand, within wcaJat 3093.045 kb on + strand, within wcaJat 3093.220 kb on - strand, within wcaJat 3093.237 kb on + strand, within wcaJat 3093.245 kb on - strand, within wcaJat 3093.403 kb on + strand, within wcaJat 3093.403 kb on + strand, within wcaJat 3093.438 kb on - strand, within wcaJat 3093.471 kb on + strand, within wcaJat 3093.811 kb on + strand, within wcaJat 3093.811 kb on + strand, within wcaJat 3093.812 kb on - strand, within wcaJat 3093.812 kb on - strand, within wcaJat 3093.826 kb on - strand, within wcaJat 3094.009 kb on + strandat 3094.010 kb on - strandat 3094.023 kb on + strandat 3094.024 kb on - strandat 3094.181 kb on - strand, within wzxCat 3094.360 kb on + strand, within wzxCat 3094.490 kb on - strand, within wzxCat 3094.490 kb on - strand, within wzxCat 3094.553 kb on - strand, within wzxCat 3094.686 kb on - strand, within wzxCat 3094.686 kb on - strand, within wzxCat 3094.693 kb on + strand, within wzxCat 3094.740 kb on + strand, within wzxCat 3094.763 kb on + strand, within wzxCat 3094.764 kb on - strand, within wzxCat 3094.764 kb on - strand, within wzxCat 3094.875 kb on - strand, within wzxCat 3095.008 kb on + strand, within wzxCat 3095.009 kb on - strand, within wzxCat 3095.210 kb on + strand, within wzxCat 3095.224 kb on + strand, within wzxCat 3095.282 kb on + strand, within wzxCat 3095.282 kb on + strand, within wzxCat 3095.308 kb on + strand, within wzxCat 3095.373 kb on + strandat 3095.439 kb on + strandat 3095.439 kb on + strandat 3095.439 kb on + strandat 3095.555 kb on + strandat 3095.555 kb on + strandat 3095.682 kb on - strandat 3095.742 kb on - strandat 3095.923 kb on + strand, within wcaKat 3095.936 kb on + strand, within wcaKat 3095.937 kb on - strand, within wcaKat 3095.937 kb on - strand, within wcaKat 3095.937 kb on - strand, within wcaKat 3095.977 kb on - strand, within wcaKat 3096.026 kb on - strand, within wcaKat 3096.130 kb on - strand, within wcaKat 3096.188 kb on - strand, within wcaKat 3096.188 kb on - strand, within wcaKat 3096.337 kb on + strand, within wcaKat 3096.337 kb on + strand, within wcaKat 3096.338 kb on - strand, within wcaKat 3096.338 kb on - strand, within wcaKat 3096.390 kb on + strand, within wcaKat 3096.445 kb on + strand, within wcaK

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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3,093,044 - wcaJ NOLOHH_15705 0.30 -0.6
3,093,045 + wcaJ NOLOHH_15705 0.30 -0.6
3,093,045 + wcaJ NOLOHH_15705 0.30 +1.6
3,093,220 - wcaJ NOLOHH_15705 0.43 +1.6
3,093,237 + wcaJ NOLOHH_15705 0.44 -0.2
3,093,245 - wcaJ NOLOHH_15705 0.45 +2.0
3,093,403 + wcaJ NOLOHH_15705 0.56 -0.0
3,093,403 + wcaJ NOLOHH_15705 0.56 +0.5
3,093,438 - wcaJ NOLOHH_15705 0.59 +0.4
3,093,471 + wcaJ NOLOHH_15705 0.61 +1.0
3,093,811 + wcaJ NOLOHH_15705 0.85 -0.3
3,093,811 + wcaJ NOLOHH_15705 0.85 -2.5
3,093,812 - wcaJ NOLOHH_15705 0.85 +1.4
3,093,812 - wcaJ NOLOHH_15705 0.85 +1.4
3,093,826 - wcaJ NOLOHH_15705 0.86 -0.0
3,094,009 + +1.3
3,094,010 - +1.0
3,094,023 + -0.0
3,094,024 - +1.0
3,094,181 - wzxC NOLOHH_15710 0.11 -1.6
3,094,360 + wzxC NOLOHH_15710 0.23 -0.4
3,094,490 - wzxC NOLOHH_15710 0.32 -0.3
3,094,490 - wzxC NOLOHH_15710 0.32 -0.2
3,094,553 - wzxC NOLOHH_15710 0.36 -0.6
3,094,686 - wzxC NOLOHH_15710 0.45 +0.7
3,094,686 - wzxC NOLOHH_15710 0.45 +1.0
3,094,693 + wzxC NOLOHH_15710 0.46 +0.4
3,094,740 + wzxC NOLOHH_15710 0.49 +2.0
3,094,763 + wzxC NOLOHH_15710 0.51 -0.6
3,094,764 - wzxC NOLOHH_15710 0.51 -0.0
3,094,764 - wzxC NOLOHH_15710 0.51 +1.2
3,094,875 - wzxC NOLOHH_15710 0.58 -0.4
3,095,008 + wzxC NOLOHH_15710 0.67 +1.0
3,095,009 - wzxC NOLOHH_15710 0.67 +0.3
3,095,210 + wzxC NOLOHH_15710 0.81 -0.1
3,095,224 + wzxC NOLOHH_15710 0.82 +1.5
3,095,282 + wzxC NOLOHH_15710 0.86 +1.0
3,095,282 + wzxC NOLOHH_15710 0.86 +0.4
3,095,308 + wzxC NOLOHH_15710 0.87 -1.4
3,095,373 + -1.6
3,095,439 + +0.1
3,095,439 + +0.5
3,095,439 + -1.9
3,095,555 + +0.1
3,095,555 + -0.8
3,095,682 - -1.8
3,095,742 - +0.2
3,095,923 + wcaK NOLOHH_15715 0.19 -0.0
3,095,936 + wcaK NOLOHH_15715 0.20 -0.0
3,095,937 - wcaK NOLOHH_15715 0.21 -0.0
3,095,937 - wcaK NOLOHH_15715 0.21 +2.0
3,095,937 - wcaK NOLOHH_15715 0.21 -1.0
3,095,977 - wcaK NOLOHH_15715 0.24 -0.6
3,096,026 - wcaK NOLOHH_15715 0.27 -0.0
3,096,130 - wcaK NOLOHH_15715 0.36 +1.0
3,096,188 - wcaK NOLOHH_15715 0.40 -0.8
3,096,188 - wcaK NOLOHH_15715 0.40 +1.0
3,096,337 + wcaK NOLOHH_15715 0.52 -1.0
3,096,337 + wcaK NOLOHH_15715 0.52 +0.4
3,096,338 - wcaK NOLOHH_15715 0.52 -1.6
3,096,338 - wcaK NOLOHH_15715 0.52 +1.0
3,096,390 + wcaK NOLOHH_15715 0.56 +0.2
3,096,445 + wcaK NOLOHH_15715 0.60 -1.4

Or see this region's nucleotide sequence