Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15515

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyegQ and parE are separated by 102 nucleotidesparE and NOLOHH_15510 are separated by 1 nucleotidesNOLOHH_15510 and yegP are separated by 253 nucleotidesyegP and baeR are separated by 190 nucleotidesbaeR and baeS overlap by 4 nucleotides NOLOHH_15500: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 3,046,682 to 3,048,043 yegQ NOLOHH_15505: parE - type II toxin-antitoxin system RelE/ParE family toxin, at 3,048,146 to 3,048,442 parE NOLOHH_15510: NOLOHH_15510 - type II toxin-antitoxin system ParD family antitoxin, at 3,048,444 to 3,048,695 _15510 NOLOHH_15515: yegP - UPF0339 protein YegP, at 3,048,949 to 3,049,281 yegP NOLOHH_15520: baeR - two-component system response regulator BaeR, at 3,049,472 to 3,050,194 baeR NOLOHH_15525: baeS - two-component system sensor histidine kinase BaeS, at 3,050,191 to 3,051,594 baeS Position (kb) 3048 3049 3050Strain fitness (log2 ratio) -2 -1 0 1 2at 3048.296 kb on + strand, within parEat 3048.297 kb on - strand, within parEat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.733 kb on + strandat 3048.766 kb on + strandat 3048.766 kb on + strandat 3048.773 kb on + strandat 3048.803 kb on + strandat 3048.807 kb on + strandat 3049.141 kb on - strand, within yegPat 3049.183 kb on - strand, within yegPat 3049.184 kb on + strand, within yegPat 3049.184 kb on + strand, within yegPat 3049.184 kb on + strand, within yegPat 3049.203 kb on + strand, within yegPat 3049.257 kb on + strandat 3049.257 kb on + strandat 3049.322 kb on + strandat 3049.322 kb on + strandat 3049.342 kb on + strandat 3049.608 kb on - strand, within baeRat 3049.611 kb on - strand, within baeRat 3049.868 kb on - strand, within baeRat 3050.016 kb on - strand, within baeRat 3050.050 kb on - strand, within baeRat 3050.159 kb on - strandat 3050.207 kb on - strandat 3050.231 kb on - strandat 3050.236 kb on - strandat 3050.236 kb on - strandat 3050.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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3,048,296 + parE NOLOHH_15505 0.51 -1.5
3,048,297 - parE NOLOHH_15505 0.51 -1.9
3,048,733 + -0.0
3,048,733 + -0.6
3,048,733 + -0.2
3,048,733 + +0.4
3,048,733 + +2.2
3,048,733 + -0.6
3,048,733 + -0.8
3,048,766 + -0.8
3,048,766 + -0.3
3,048,773 + +1.1
3,048,803 + -0.0
3,048,807 + -0.0
3,049,141 - yegP NOLOHH_15515 0.58 -0.0
3,049,183 - yegP NOLOHH_15515 0.70 +1.0
3,049,184 + yegP NOLOHH_15515 0.71 -0.8
3,049,184 + yegP NOLOHH_15515 0.71 +2.0
3,049,184 + yegP NOLOHH_15515 0.71 -0.4
3,049,203 + yegP NOLOHH_15515 0.76 +1.0
3,049,257 + +2.0
3,049,257 + +1.2
3,049,322 + -0.6
3,049,322 + +1.0
3,049,342 + +0.8
3,049,608 - baeR NOLOHH_15520 0.19 -0.0
3,049,611 - baeR NOLOHH_15520 0.19 -1.0
3,049,868 - baeR NOLOHH_15520 0.55 +0.6
3,050,016 - baeR NOLOHH_15520 0.75 -0.6
3,050,050 - baeR NOLOHH_15520 0.80 -0.0
3,050,159 - -0.4
3,050,207 - -0.6
3,050,231 - -0.9
3,050,236 - -0.0
3,050,236 - +1.0
3,050,272 - +0.6

Or see this region's nucleotide sequence