Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt qorA and pspG are separated by 165 nucleotides pspG and dusA are separated by 133 nucleotides dusA and yjbM are separated by 362 nucleotides
NOLOHH_05185: qorA - Quinone oxidoreductase 1, at 954,345 to 955,328
qorA
NOLOHH_05190: pspG - envelope stress response protein PspG, at 955,494 to 955,736
pspG
NOLOHH_05195: dusA - tRNA dihydrouridine(20/20a) synthase DusA, at 955,870 to 956,907
dusA
NOLOHH_05200: yjbM - Uncharacterized protein YjbM, at 957,270 to 958,286
yjbM
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.890 kb on - strand, within qorA at 954.912 kb on - strand, within qorA at 954.914 kb on + strand, within qorA at 954.914 kb on + strand, within qorA at 954.914 kb on + strand, within qorA at 954.915 kb on - strand, within qorA at 954.915 kb on - strand, within qorA at 954.915 kb on - strand, within qorA at 954.915 kb on - strand, within qorA at 954.918 kb on + strand, within qorA at 954.984 kb on + strand, within qorA at 954.984 kb on + strand, within qorA at 955.045 kb on + strand, within qorA at 955.045 kb on + strand, within qorA at 955.045 kb on + strand, within qorA at 955.122 kb on + strand, within qorA at 955.122 kb on + strand, within qorA at 955.122 kb on + strand, within qorA at 955.122 kb on + strand, within qorA at 955.122 kb on + strand, within qorA at 955.123 kb on - strand, within qorA at 955.149 kb on + strand, within qorA at 955.149 kb on + strand, within qorA at 955.149 kb on + strand, within qorA at 955.149 kb on + strand, within qorA at 955.149 kb on + strand, within qorA at 955.150 kb on - strand, within qorA at 955.150 kb on - strand, within qorA at 955.150 kb on - strand, within qorA at 955.150 kb on - strand, within qorA at 955.150 kb on - strand, within qorA at 955.150 kb on - strand, within qorA at 955.151 kb on + strand, within qorA at 955.151 kb on + strand, within qorA at 955.151 kb on + strand, within qorA at 955.151 kb on + strand, within qorA at 955.151 kb on + strand, within qorA at 955.220 kb on + strand, within qorA at 955.369 kb on - strand at 955.379 kb on + strand at 955.379 kb on + strand at 955.379 kb on + strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.380 kb on - strand at 955.383 kb on + strand at 955.384 kb on - strand at 955.384 kb on - strand at 955.384 kb on - strand at 955.444 kb on + strand at 955.454 kb on + strand at 955.469 kb on - strand at 955.469 kb on - strand at 955.469 kb on - strand at 955.469 kb on - strand at 955.469 kb on - strand at 955.553 kb on + strand, within pspG at 955.581 kb on + strand, within pspG at 955.581 kb on + strand, within pspG at 955.581 kb on + strand, within pspG at 955.601 kb on + strand, within pspG at 955.602 kb on - strand, within pspG at 955.602 kb on - strand, within pspG at 955.602 kb on - strand, within pspG at 955.634 kb on + strand, within pspG at 955.634 kb on + strand, within pspG at 955.634 kb on + strand, within pspG at 955.635 kb on - strand, within pspG at 955.635 kb on - strand, within pspG at 955.725 kb on + strand at 955.725 kb on + strand at 955.853 kb on + strand at 955.914 kb on + strand at 955.915 kb on - strand at 955.948 kb on + strand at 955.948 kb on + strand at 955.980 kb on + strand, within dusA at 956.001 kb on + strand, within dusA at 956.001 kb on + strand, within dusA at 956.001 kb on + strand, within dusA at 956.001 kb on + strand, within dusA at 956.002 kb on - strand, within dusA at 956.024 kb on + strand, within dusA at 956.024 kb on + strand, within dusA at 956.025 kb on - strand, within dusA at 956.025 kb on - strand, within dusA at 956.055 kb on - strand, within dusA at 956.055 kb on - strand, within dusA at 956.061 kb on - strand, within dusA at 956.061 kb on - strand, within dusA at 956.184 kb on + strand, within dusA at 956.184 kb on + strand, within dusA at 956.185 kb on - strand, within dusA at 956.185 kb on - strand, within dusA at 956.185 kb on - strand, within dusA at 956.185 kb on - strand, within dusA at 956.223 kb on + strand, within dusA at 956.274 kb on - strand, within dusA at 956.343 kb on + strand, within dusA at 956.417 kb on + strand, within dusA at 956.418 kb on - strand, within dusA at 956.418 kb on - strand, within dusA at 956.418 kb on - strand, within dusA at 956.688 kb on - strand, within dusA at 956.715 kb on + strand, within dusA at 956.744 kb on + strand, within dusA at 956.744 kb on + strand, within dusA at 956.744 kb on + strand, within dusA at 956.745 kb on - strand, within dusA at 956.745 kb on - strand, within dusA at 956.754 kb on + strand, within dusA at 956.755 kb on - strand, within dusA at 956.755 kb on - strand, within dusA at 956.755 kb on - strand, within dusA at 956.937 kb on + strand at 956.967 kb on - strand at 956.993 kb on + strand at 956.993 kb on + strand at 956.993 kb on + strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.994 kb on - strand at 956.995 kb on + strand at 956.995 kb on + strand at 956.995 kb on + strand at 957.171 kb on + strand at 957.173 kb on + strand at 957.517 kb on + strand, within yjbM at 957.718 kb on - strand, within yjbM at 957.868 kb on - strand, within yjbM at 957.869 kb on + strand, within yjbM at 957.872 kb on + strand, within yjbM
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 954,890 - qorA NOLOHH_05185 0.55 -1.1 954,912 - qorA NOLOHH_05185 0.58 -0.7 954,914 + qorA NOLOHH_05185 0.58 +0.6 954,914 + qorA NOLOHH_05185 0.58 +0.2 954,914 + qorA NOLOHH_05185 0.58 -0.4 954,915 - qorA NOLOHH_05185 0.58 +0.2 954,915 - qorA NOLOHH_05185 0.58 +1.4 954,915 - qorA NOLOHH_05185 0.58 +1.1 954,915 - qorA NOLOHH_05185 0.58 +0.7 954,918 + qorA NOLOHH_05185 0.58 +0.2 954,984 + qorA NOLOHH_05185 0.65 -0.4 954,984 + qorA NOLOHH_05185 0.65 +2.0 955,045 + qorA NOLOHH_05185 0.71 +1.0 955,045 + qorA NOLOHH_05185 0.71 +0.4 955,045 + qorA NOLOHH_05185 0.71 -0.1 955,122 + qorA NOLOHH_05185 0.79 -1.1 955,122 + qorA NOLOHH_05185 0.79 +0.1 955,122 + qorA NOLOHH_05185 0.79 -0.4 955,122 + qorA NOLOHH_05185 0.79 +0.1 955,122 + qorA NOLOHH_05185 0.79 -0.2 955,123 - qorA NOLOHH_05185 0.79 +1.1 955,149 + qorA NOLOHH_05185 0.82 -0.9 955,149 + qorA NOLOHH_05185 0.82 +1.0 955,149 + qorA NOLOHH_05185 0.82 -1.2 955,149 + qorA NOLOHH_05185 0.82 +0.3 955,149 + qorA NOLOHH_05185 0.82 -1.4 955,150 - qorA NOLOHH_05185 0.82 -0.1 955,150 - qorA NOLOHH_05185 0.82 -0.1 955,150 - qorA NOLOHH_05185 0.82 -1.1 955,150 - qorA NOLOHH_05185 0.82 -1.1 955,150 - qorA NOLOHH_05185 0.82 +0.7 955,150 - qorA NOLOHH_05185 0.82 -1.0 955,151 + qorA NOLOHH_05185 0.82 -0.6 955,151 + qorA NOLOHH_05185 0.82 +0.7 955,151 + qorA NOLOHH_05185 0.82 +0.4 955,151 + qorA NOLOHH_05185 0.82 -0.0 955,151 + qorA NOLOHH_05185 0.82 +0.4 955,220 + qorA NOLOHH_05185 0.89 +1.4 955,369 - +0.2 955,379 + +0.3 955,379 + +0.2 955,379 + -0.6 955,380 - +0.4 955,380 - +0.6 955,380 - +1.4 955,380 - +0.2 955,380 - -0.2 955,380 - -0.6 955,380 - +1.1 955,380 - -0.1 955,380 - -0.2 955,383 + +0.8 955,384 - -0.4 955,384 - -1.3 955,384 - -1.7 955,444 + +0.4 955,454 + +0.8 955,469 - -1.2 955,469 - -1.9 955,469 - -1.2 955,469 - -0.5 955,469 - +0.4 955,553 + pspG NOLOHH_05190 0.24 -1.6 955,581 + pspG NOLOHH_05190 0.36 -1.0 955,581 + pspG NOLOHH_05190 0.36 -1.0 955,581 + pspG NOLOHH_05190 0.36 -0.7 955,601 + pspG NOLOHH_05190 0.44 -0.6 955,602 - pspG NOLOHH_05190 0.44 +0.7 955,602 - pspG NOLOHH_05190 0.44 -1.9 955,602 - pspG NOLOHH_05190 0.44 +0.5 955,634 + pspG NOLOHH_05190 0.58 +0.2 955,634 + pspG NOLOHH_05190 0.58 -1.1 955,634 + pspG NOLOHH_05190 0.58 -0.4 955,635 - pspG NOLOHH_05190 0.58 -0.4 955,635 - pspG NOLOHH_05190 0.58 -0.4 955,725 + +0.1 955,725 + -1.1 955,853 + -0.1 955,914 + -1.4 955,915 - +1.1 955,948 + +1.0 955,948 + -1.6 955,980 + dusA NOLOHH_05195 0.11 -2.2 956,001 + dusA NOLOHH_05195 0.13 +0.0 956,001 + dusA NOLOHH_05195 0.13 -1.1 956,001 + dusA NOLOHH_05195 0.13 -0.1 956,001 + dusA NOLOHH_05195 0.13 +0.8 956,002 - dusA NOLOHH_05195 0.13 -1.9 956,024 + dusA NOLOHH_05195 0.15 -0.6 956,024 + dusA NOLOHH_05195 0.15 +0.3 956,025 - dusA NOLOHH_05195 0.15 -1.2 956,025 - dusA NOLOHH_05195 0.15 -0.3 956,055 - dusA NOLOHH_05195 0.18 +1.4 956,055 - dusA NOLOHH_05195 0.18 +0.4 956,061 - dusA NOLOHH_05195 0.18 +1.3 956,061 - dusA NOLOHH_05195 0.18 -1.4 956,184 + dusA NOLOHH_05195 0.30 -0.2 956,184 + dusA NOLOHH_05195 0.30 -0.2 956,185 - dusA NOLOHH_05195 0.30 -0.3 956,185 - dusA NOLOHH_05195 0.30 +0.3 956,185 - dusA NOLOHH_05195 0.30 -0.1 956,185 - dusA NOLOHH_05195 0.30 -0.6 956,223 + dusA NOLOHH_05195 0.34 -0.3 956,274 - dusA NOLOHH_05195 0.39 -0.3 956,343 + dusA NOLOHH_05195 0.46 -0.6 956,417 + dusA NOLOHH_05195 0.53 -0.2 956,418 - dusA NOLOHH_05195 0.53 -0.9 956,418 - dusA NOLOHH_05195 0.53 -0.9 956,418 - dusA NOLOHH_05195 0.53 -0.6 956,688 - dusA NOLOHH_05195 0.79 -0.2 956,715 + dusA NOLOHH_05195 0.81 +0.1 956,744 + dusA NOLOHH_05195 0.84 +0.4 956,744 + dusA NOLOHH_05195 0.84 -0.5 956,744 + dusA NOLOHH_05195 0.84 +0.3 956,745 - dusA NOLOHH_05195 0.84 -0.2 956,745 - dusA NOLOHH_05195 0.84 +0.6 956,754 + dusA NOLOHH_05195 0.85 -0.2 956,755 - dusA NOLOHH_05195 0.85 -0.6 956,755 - dusA NOLOHH_05195 0.85 -2.2 956,755 - dusA NOLOHH_05195 0.85 -1.2 956,937 + +0.0 956,967 - +0.0 956,993 + +1.0 956,993 + +0.2 956,993 + -0.7 956,994 - -0.2 956,994 - -0.3 956,994 - -0.3 956,994 - -0.2 956,994 - -0.7 956,994 - +1.6 956,994 - +0.7 956,995 + -0.6 956,995 + -0.3 956,995 + -0.6 957,171 + +0.2 957,173 + +1.2 957,517 + yjbM NOLOHH_05200 0.24 -0.9 957,718 - yjbM NOLOHH_05200 0.44 +1.5 957,868 - yjbM NOLOHH_05200 0.59 +0.4 957,869 + yjbM NOLOHH_05200 0.59 +0.8 957,872 + yjbM NOLOHH_05200 0.59 +0.4
Or see this region's nucleotide sequence