Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmB and rnr are separated by 179 nucleotides rnr and nsrR are separated by 38 nucleotides nsrR and purA are separated by 204 nucleotides
NOLOHH_04480: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 808,889 to 809,620
rlmB
NOLOHH_04485: rnr - ribonuclease R, at 809,800 to 812,241
rnr
NOLOHH_04490: nsrR - nitric oxide-sensing transcriptional repressor NsrR, at 812,280 to 812,705
nsrR
NOLOHH_04495: purA - adenylosuccinate synthase, at 812,910 to 814,208
purA
Position (kb) 809
810
811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 808.820 kb on - strand at 808.820 kb on - strand at 808.836 kb on - strand at 808.890 kb on + strand at 808.891 kb on - strand at 809.017 kb on + strand, within rlmB at 809.018 kb on - strand, within rlmB at 809.018 kb on - strand, within rlmB at 809.074 kb on - strand, within rlmB at 809.080 kb on + strand, within rlmB at 809.080 kb on + strand, within rlmB at 809.080 kb on + strand, within rlmB at 809.080 kb on + strand, within rlmB at 809.080 kb on + strand, within rlmB at 809.081 kb on - strand, within rlmB at 809.081 kb on - strand, within rlmB at 809.081 kb on - strand, within rlmB at 809.081 kb on - strand, within rlmB at 809.081 kb on - strand, within rlmB at 809.117 kb on - strand, within rlmB at 809.117 kb on - strand, within rlmB at 809.134 kb on + strand, within rlmB at 809.134 kb on + strand, within rlmB at 809.134 kb on + strand, within rlmB at 809.134 kb on + strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.135 kb on - strand, within rlmB at 809.451 kb on + strand, within rlmB at 809.451 kb on + strand, within rlmB at 809.452 kb on - strand, within rlmB at 809.543 kb on - strand, within rlmB at 809.605 kb on - strand at 809.627 kb on - strand at 809.627 kb on - strand at 809.627 kb on - strand at 809.627 kb on - strand at 809.672 kb on - strand at 809.707 kb on - strand at 809.707 kb on - strand at 809.772 kb on - strand at 809.785 kb on + strand at 809.785 kb on + strand at 810.075 kb on + strand, within rnr at 810.076 kb on - strand, within rnr at 810.182 kb on - strand, within rnr at 810.197 kb on + strand, within rnr at 810.198 kb on - strand, within rnr at 810.200 kb on + strand, within rnr at 810.201 kb on - strand, within rnr at 810.201 kb on - strand, within rnr at 810.201 kb on - strand, within rnr at 810.201 kb on - strand, within rnr at 810.201 kb on - strand, within rnr at 810.201 kb on - strand, within rnr at 810.314 kb on - strand, within rnr at 810.314 kb on - strand, within rnr at 810.491 kb on + strand, within rnr at 810.492 kb on - strand, within rnr at 810.495 kb on + strand, within rnr at 810.496 kb on - strand, within rnr at 810.496 kb on - strand, within rnr at 810.496 kb on - strand, within rnr at 810.543 kb on + strand, within rnr at 810.544 kb on - strand, within rnr at 810.544 kb on - strand, within rnr at 810.555 kb on - strand, within rnr at 810.622 kb on + strand, within rnr at 810.840 kb on + strand, within rnr at 810.869 kb on - strand, within rnr at 810.999 kb on + strand, within rnr at 810.999 kb on + strand, within rnr at 811.002 kb on - strand, within rnr at 811.043 kb on + strand, within rnr at 811.044 kb on - strand, within rnr at 811.077 kb on + strand, within rnr at 811.094 kb on + strand, within rnr at 811.095 kb on - strand, within rnr at 811.185 kb on + strand, within rnr at 811.185 kb on + strand, within rnr at 811.185 kb on + strand, within rnr at 811.185 kb on + strand, within rnr at 811.186 kb on - strand, within rnr at 811.186 kb on - strand, within rnr at 811.186 kb on - strand, within rnr at 811.272 kb on - strand, within rnr at 811.272 kb on - strand, within rnr at 811.272 kb on - strand, within rnr at 811.272 kb on - strand, within rnr at 811.272 kb on - strand, within rnr at 811.281 kb on + strand, within rnr at 811.282 kb on - strand, within rnr at 811.282 kb on - strand, within rnr at 811.328 kb on + strand, within rnr at 811.328 kb on + strand, within rnr at 811.328 kb on + strand, within rnr at 811.329 kb on - strand, within rnr at 811.329 kb on - strand, within rnr at 811.329 kb on - strand, within rnr at 811.329 kb on - strand, within rnr at 811.329 kb on - strand, within rnr at 811.329 kb on - strand, within rnr at 811.329 kb on - strand, within rnr at 811.331 kb on + strand, within rnr at 811.331 kb on + strand, within rnr at 811.331 kb on + strand, within rnr at 811.445 kb on - strand, within rnr at 811.539 kb on - strand, within rnr at 811.566 kb on + strand, within rnr at 811.617 kb on + strand, within rnr at 811.811 kb on - strand, within rnr at 811.821 kb on + strand, within rnr at 811.916 kb on + strand, within rnr at 811.916 kb on + strand, within rnr at 811.917 kb on - strand, within rnr at 811.917 kb on - strand, within rnr at 811.917 kb on - strand, within rnr at 811.930 kb on - strand, within rnr at 811.930 kb on - strand, within rnr at 811.980 kb on + strand, within rnr at 812.116 kb on + strand at 812.158 kb on + strand at 812.158 kb on + strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.295 kb on + strand at 812.295 kb on + strand at 812.296 kb on - strand at 812.296 kb on - strand at 812.301 kb on - strand at 812.341 kb on + strand, within nsrR at 812.341 kb on + strand, within nsrR at 812.342 kb on - strand, within nsrR at 812.357 kb on + strand, within nsrR at 812.411 kb on + strand, within nsrR at 812.411 kb on + strand, within nsrR at 812.411 kb on + strand, within nsrR at 812.411 kb on + strand, within nsrR at 812.412 kb on - strand, within nsrR at 812.412 kb on - strand, within nsrR at 812.412 kb on - strand, within nsrR at 812.412 kb on - strand, within nsrR at 812.480 kb on + strand, within nsrR at 812.480 kb on + strand, within nsrR at 812.480 kb on + strand, within nsrR at 812.481 kb on - strand, within nsrR at 812.481 kb on - strand, within nsrR at 812.558 kb on + strand, within nsrR at 812.558 kb on + strand, within nsrR at 812.559 kb on - strand, within nsrR at 812.582 kb on + strand, within nsrR at 812.582 kb on + strand, within nsrR at 812.583 kb on - strand, within nsrR at 812.583 kb on - strand, within nsrR at 812.602 kb on + strand, within nsrR at 812.602 kb on + strand, within nsrR at 812.624 kb on + strand, within nsrR at 812.674 kb on - strand at 812.742 kb on + strand at 812.742 kb on + strand at 812.742 kb on + strand at 812.742 kb on + strand at 812.742 kb on + strand at 812.743 kb on - strand at 812.743 kb on - strand at 812.745 kb on - strand at 812.745 kb on - strand at 812.745 kb on - strand at 812.816 kb on + strand at 812.816 kb on + strand at 812.817 kb on - strand at 812.861 kb on + strand at 812.861 kb on + strand at 812.861 kb on + strand at 812.862 kb on - strand at 812.862 kb on - strand at 812.862 kb on - strand at 812.862 kb on - strand at 812.862 kb on - strand at 812.890 kb on - strand at 812.890 kb on - strand at 812.911 kb on + strand at 812.912 kb on - strand at 812.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 808,820 - -1.4 808,820 - -0.6 808,836 - +2.1 808,890 + +1.1 808,891 - -0.1 809,017 + rlmB NOLOHH_04480 0.17 +0.0 809,018 - rlmB NOLOHH_04480 0.18 -0.5 809,018 - rlmB NOLOHH_04480 0.18 -0.3 809,074 - rlmB NOLOHH_04480 0.25 +0.1 809,080 + rlmB NOLOHH_04480 0.26 -0.3 809,080 + rlmB NOLOHH_04480 0.26 -0.5 809,080 + rlmB NOLOHH_04480 0.26 -0.2 809,080 + rlmB NOLOHH_04480 0.26 -0.2 809,080 + rlmB NOLOHH_04480 0.26 +0.8 809,081 - rlmB NOLOHH_04480 0.26 +1.3 809,081 - rlmB NOLOHH_04480 0.26 -0.5 809,081 - rlmB NOLOHH_04480 0.26 +0.8 809,081 - rlmB NOLOHH_04480 0.26 -0.9 809,081 - rlmB NOLOHH_04480 0.26 -1.0 809,117 - rlmB NOLOHH_04480 0.31 +1.8 809,117 - rlmB NOLOHH_04480 0.31 -0.1 809,134 + rlmB NOLOHH_04480 0.33 -0.5 809,134 + rlmB NOLOHH_04480 0.33 -0.5 809,134 + rlmB NOLOHH_04480 0.33 +0.5 809,134 + rlmB NOLOHH_04480 0.33 -0.5 809,135 - rlmB NOLOHH_04480 0.34 +0.9 809,135 - rlmB NOLOHH_04480 0.34 -0.1 809,135 - rlmB NOLOHH_04480 0.34 +0.1 809,135 - rlmB NOLOHH_04480 0.34 +1.5 809,135 - rlmB NOLOHH_04480 0.34 -0.5 809,135 - rlmB NOLOHH_04480 0.34 +0.1 809,135 - rlmB NOLOHH_04480 0.34 -0.1 809,451 + rlmB NOLOHH_04480 0.77 -0.5 809,451 + rlmB NOLOHH_04480 0.77 +0.1 809,452 - rlmB NOLOHH_04480 0.77 +2.1 809,543 - rlmB NOLOHH_04480 0.89 -0.3 809,605 - -1.1 809,627 - +0.5 809,627 - +1.1 809,627 - +0.5 809,627 - +1.2 809,672 - +0.0 809,707 - -0.1 809,707 - -0.5 809,772 - +1.5 809,785 + -0.1 809,785 + -0.1 810,075 + rnr NOLOHH_04485 0.11 +2.1 810,076 - rnr NOLOHH_04485 0.11 +0.8 810,182 - rnr NOLOHH_04485 0.16 -0.7 810,197 + rnr NOLOHH_04485 0.16 -0.1 810,198 - rnr NOLOHH_04485 0.16 +1.0 810,200 + rnr NOLOHH_04485 0.16 +0.5 810,201 - rnr NOLOHH_04485 0.16 -0.8 810,201 - rnr NOLOHH_04485 0.16 +0.2 810,201 - rnr NOLOHH_04485 0.16 -0.2 810,201 - rnr NOLOHH_04485 0.16 +0.1 810,201 - rnr NOLOHH_04485 0.16 -2.7 810,201 - rnr NOLOHH_04485 0.16 +0.9 810,314 - rnr NOLOHH_04485 0.21 +0.5 810,314 - rnr NOLOHH_04485 0.21 -0.8 810,491 + rnr NOLOHH_04485 0.28 -0.6 810,492 - rnr NOLOHH_04485 0.28 +0.6 810,495 + rnr NOLOHH_04485 0.28 -0.5 810,496 - rnr NOLOHH_04485 0.29 +0.2 810,496 - rnr NOLOHH_04485 0.29 -0.1 810,496 - rnr NOLOHH_04485 0.29 +1.5 810,543 + rnr NOLOHH_04485 0.30 +1.1 810,544 - rnr NOLOHH_04485 0.30 +0.7 810,544 - rnr NOLOHH_04485 0.30 -0.6 810,555 - rnr NOLOHH_04485 0.31 -0.4 810,622 + rnr NOLOHH_04485 0.34 -0.1 810,840 + rnr NOLOHH_04485 0.43 -1.7 810,869 - rnr NOLOHH_04485 0.44 +0.5 810,999 + rnr NOLOHH_04485 0.49 +0.4 810,999 + rnr NOLOHH_04485 0.49 -0.1 811,002 - rnr NOLOHH_04485 0.49 +1.8 811,043 + rnr NOLOHH_04485 0.51 -0.6 811,044 - rnr NOLOHH_04485 0.51 -0.7 811,077 + rnr NOLOHH_04485 0.52 -0.5 811,094 + rnr NOLOHH_04485 0.53 -1.1 811,095 - rnr NOLOHH_04485 0.53 +1.0 811,185 + rnr NOLOHH_04485 0.57 +0.5 811,185 + rnr NOLOHH_04485 0.57 +0.9 811,185 + rnr NOLOHH_04485 0.57 +1.9 811,185 + rnr NOLOHH_04485 0.57 +1.1 811,186 - rnr NOLOHH_04485 0.57 +0.5 811,186 - rnr NOLOHH_04485 0.57 -0.5 811,186 - rnr NOLOHH_04485 0.57 +0.5 811,272 - rnr NOLOHH_04485 0.60 +1.2 811,272 - rnr NOLOHH_04485 0.60 +0.1 811,272 - rnr NOLOHH_04485 0.60 +0.5 811,272 - rnr NOLOHH_04485 0.60 +0.2 811,272 - rnr NOLOHH_04485 0.60 -0.8 811,281 + rnr NOLOHH_04485 0.61 +0.2 811,282 - rnr NOLOHH_04485 0.61 -0.1 811,282 - rnr NOLOHH_04485 0.61 +0.8 811,328 + rnr NOLOHH_04485 0.63 -0.8 811,328 + rnr NOLOHH_04485 0.63 +0.5 811,328 + rnr NOLOHH_04485 0.63 -0.8 811,329 - rnr NOLOHH_04485 0.63 +0.9 811,329 - rnr NOLOHH_04485 0.63 +1.3 811,329 - rnr NOLOHH_04485 0.63 -1.2 811,329 - rnr NOLOHH_04485 0.63 -0.1 811,329 - rnr NOLOHH_04485 0.63 +0.5 811,329 - rnr NOLOHH_04485 0.63 +0.5 811,329 - rnr NOLOHH_04485 0.63 -0.2 811,331 + rnr NOLOHH_04485 0.63 +0.3 811,331 + rnr NOLOHH_04485 0.63 +0.1 811,331 + rnr NOLOHH_04485 0.63 -0.7 811,445 - rnr NOLOHH_04485 0.67 +0.7 811,539 - rnr NOLOHH_04485 0.71 +0.5 811,566 + rnr NOLOHH_04485 0.72 +0.3 811,617 + rnr NOLOHH_04485 0.74 +0.2 811,811 - rnr NOLOHH_04485 0.82 -0.3 811,821 + rnr NOLOHH_04485 0.83 +0.2 811,916 + rnr NOLOHH_04485 0.87 +1.4 811,916 + rnr NOLOHH_04485 0.87 -1.5 811,917 - rnr NOLOHH_04485 0.87 -0.3 811,917 - rnr NOLOHH_04485 0.87 +0.9 811,917 - rnr NOLOHH_04485 0.87 -1.5 811,930 - rnr NOLOHH_04485 0.87 -0.5 811,930 - rnr NOLOHH_04485 0.87 +0.1 811,980 + rnr NOLOHH_04485 0.89 -3.0 812,116 + +3.1 812,158 + +0.5 812,158 + -1.3 812,173 - +1.7 812,173 - -0.0 812,295 + +2.1 812,295 + +0.5 812,296 - -0.5 812,296 - +0.2 812,301 - +1.5 812,341 + nsrR NOLOHH_04490 0.14 -0.5 812,341 + nsrR NOLOHH_04490 0.14 -0.6 812,342 - nsrR NOLOHH_04490 0.15 +2.8 812,357 + nsrR NOLOHH_04490 0.18 -1.3 812,411 + nsrR NOLOHH_04490 0.31 -0.8 812,411 + nsrR NOLOHH_04490 0.31 -0.9 812,411 + nsrR NOLOHH_04490 0.31 +1.5 812,411 + nsrR NOLOHH_04490 0.31 -2.1 812,412 - nsrR NOLOHH_04490 0.31 -1.3 812,412 - nsrR NOLOHH_04490 0.31 +2.3 812,412 - nsrR NOLOHH_04490 0.31 +1.1 812,412 - nsrR NOLOHH_04490 0.31 -0.6 812,480 + nsrR NOLOHH_04490 0.47 -0.6 812,480 + nsrR NOLOHH_04490 0.47 -0.5 812,480 + nsrR NOLOHH_04490 0.47 -2.3 812,481 - nsrR NOLOHH_04490 0.47 -0.3 812,481 - nsrR NOLOHH_04490 0.47 -0.1 812,558 + nsrR NOLOHH_04490 0.65 -0.1 812,558 + nsrR NOLOHH_04490 0.65 -0.5 812,559 - nsrR NOLOHH_04490 0.65 -0.7 812,582 + nsrR NOLOHH_04490 0.71 +1.5 812,582 + nsrR NOLOHH_04490 0.71 +1.5 812,583 - nsrR NOLOHH_04490 0.71 -0.2 812,583 - nsrR NOLOHH_04490 0.71 +0.5 812,602 + nsrR NOLOHH_04490 0.76 -1.5 812,602 + nsrR NOLOHH_04490 0.76 +2.5 812,624 + nsrR NOLOHH_04490 0.81 +0.5 812,674 - +0.1 812,742 + -0.5 812,742 + -0.1 812,742 + -0.1 812,742 + -0.9 812,742 + -0.8 812,743 - -0.1 812,743 - +1.7 812,745 - +1.0 812,745 - +0.1 812,745 - +1.2 812,816 + +0.2 812,816 + -0.5 812,817 - +0.8 812,861 + +0.2 812,861 + -0.5 812,861 + -0.9 812,862 - +0.3 812,862 - -1.1 812,862 - -0.3 812,862 - +0.1 812,862 - -0.3 812,890 - +0.1 812,890 - +2.1 812,911 + -2.1 812,912 - -1.4 812,912 - +0.1
Or see this region's nucleotide sequence