Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gntP and fimH are separated by 242 nucleotides fimH and fimG are separated by 19 nucleotides fimG and fimF are separated by 12 nucleotides
NOLOHH_03895: gntP - gluconate permease GntP, at 698,148 to 699,491
gntP
NOLOHH_03900: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 699,734 to 700,636
fimH
NOLOHH_03905: fimG - FimG protein precursor, at 700,656 to 701,159
fimG
NOLOHH_03910: fimF - type 1 fimbria minor subunit FimF, at 701,172 to 701,702
fimF
Position (kb) 699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 698.797 kb on + strand, within gntP at 698.797 kb on + strand, within gntP at 698.798 kb on - strand, within gntP at 698.801 kb on + strand, within gntP at 698.801 kb on + strand, within gntP at 698.801 kb on + strand, within gntP at 698.801 kb on + strand, within gntP at 698.801 kb on + strand, within gntP at 698.802 kb on - strand, within gntP at 698.802 kb on - strand, within gntP at 698.802 kb on - strand, within gntP at 698.807 kb on + strand, within gntP at 698.807 kb on + strand, within gntP at 698.808 kb on - strand, within gntP at 698.861 kb on + strand, within gntP at 698.862 kb on - strand, within gntP at 698.862 kb on - strand, within gntP at 698.862 kb on - strand, within gntP at 698.870 kb on + strand, within gntP at 698.871 kb on - strand, within gntP at 698.885 kb on + strand, within gntP at 698.885 kb on + strand, within gntP at 698.886 kb on - strand, within gntP at 698.897 kb on - strand, within gntP at 698.957 kb on + strand, within gntP at 698.957 kb on + strand, within gntP at 698.981 kb on - strand, within gntP at 699.050 kb on + strand, within gntP at 699.101 kb on + strand, within gntP at 699.101 kb on + strand, within gntP at 699.102 kb on - strand, within gntP at 699.155 kb on + strand, within gntP at 699.156 kb on - strand, within gntP at 699.156 kb on - strand, within gntP at 699.165 kb on + strand, within gntP at 699.166 kb on - strand, within gntP at 699.166 kb on - strand, within gntP at 699.166 kb on - strand, within gntP at 699.193 kb on + strand, within gntP at 699.193 kb on + strand, within gntP at 699.248 kb on + strand, within gntP at 699.248 kb on + strand, within gntP at 699.249 kb on - strand, within gntP at 699.249 kb on - strand, within gntP at 699.249 kb on - strand, within gntP at 699.250 kb on + strand, within gntP at 699.250 kb on + strand, within gntP at 699.250 kb on + strand, within gntP at 699.250 kb on + strand, within gntP at 699.250 kb on + strand, within gntP at 699.250 kb on + strand, within gntP at 699.251 kb on - strand, within gntP at 699.251 kb on - strand, within gntP at 699.265 kb on + strand, within gntP at 699.265 kb on + strand, within gntP at 699.266 kb on - strand, within gntP at 699.313 kb on + strand, within gntP at 699.353 kb on + strand, within gntP at 699.384 kb on + strand at 699.384 kb on + strand at 699.385 kb on - strand at 699.461 kb on + strand at 699.461 kb on + strand at 699.476 kb on + strand at 699.477 kb on - strand at 699.489 kb on + strand at 699.489 kb on + strand at 699.540 kb on + strand at 699.685 kb on - strand at 699.695 kb on - strand at 699.713 kb on + strand at 699.741 kb on + strand at 699.741 kb on + strand at 699.799 kb on + strand at 699.854 kb on + strand, within fimH at 699.860 kb on + strand, within fimH at 699.880 kb on + strand, within fimH at 699.906 kb on - strand, within fimH at 699.987 kb on + strand, within fimH at 699.987 kb on + strand, within fimH at 699.988 kb on - strand, within fimH at 699.988 kb on - strand, within fimH at 699.988 kb on - strand, within fimH at 699.988 kb on - strand, within fimH at 699.988 kb on - strand, within fimH at 699.988 kb on - strand, within fimH at 699.990 kb on + strand, within fimH at 700.018 kb on - strand, within fimH at 700.103 kb on - strand, within fimH at 700.120 kb on + strand, within fimH at 700.121 kb on - strand, within fimH at 700.121 kb on - strand, within fimH at 700.129 kb on - strand, within fimH at 700.133 kb on - strand, within fimH at 700.164 kb on + strand, within fimH at 700.164 kb on + strand, within fimH at 700.164 kb on + strand, within fimH at 700.164 kb on + strand, within fimH at 700.164 kb on + strand, within fimH at 700.164 kb on + strand, within fimH at 700.165 kb on - strand, within fimH at 700.165 kb on - strand, within fimH at 700.165 kb on - strand, within fimH at 700.165 kb on - strand, within fimH at 700.186 kb on + strand, within fimH at 700.199 kb on + strand, within fimH at 700.213 kb on + strand, within fimH at 700.289 kb on - strand, within fimH at 700.333 kb on + strand, within fimH at 700.333 kb on + strand, within fimH at 700.334 kb on - strand, within fimH at 700.334 kb on - strand, within fimH at 700.334 kb on - strand, within fimH at 700.342 kb on + strand, within fimH at 700.343 kb on - strand, within fimH at 700.344 kb on + strand, within fimH at 700.344 kb on + strand, within fimH at 700.344 kb on + strand, within fimH at 700.345 kb on - strand, within fimH at 700.345 kb on - strand, within fimH at 700.349 kb on + strand, within fimH at 700.371 kb on - strand, within fimH at 700.410 kb on + strand, within fimH at 700.410 kb on + strand, within fimH at 700.410 kb on + strand, within fimH at 700.411 kb on - strand, within fimH at 700.411 kb on - strand, within fimH at 700.411 kb on - strand, within fimH at 700.418 kb on - strand, within fimH at 700.508 kb on + strand, within fimH at 700.508 kb on + strand, within fimH at 700.509 kb on - strand, within fimH at 700.509 kb on - strand, within fimH at 700.512 kb on + strand, within fimH at 700.512 kb on + strand, within fimH at 700.512 kb on + strand, within fimH at 700.513 kb on - strand, within fimH at 700.513 kb on - strand, within fimH at 700.538 kb on - strand, within fimH at 700.550 kb on - strand at 700.564 kb on + strand at 700.587 kb on - strand at 700.607 kb on + strand at 700.622 kb on - strand at 700.624 kb on + strand at 700.625 kb on - strand at 700.638 kb on - strand at 700.663 kb on + strand at 700.663 kb on + strand at 700.663 kb on + strand at 700.663 kb on + strand at 700.664 kb on - strand at 700.664 kb on - strand at 700.667 kb on + strand at 700.668 kb on - strand at 700.668 kb on - strand at 700.668 kb on - strand at 700.668 kb on - strand at 700.669 kb on + strand at 700.669 kb on + strand at 700.669 kb on + strand at 700.669 kb on + strand at 700.669 kb on + strand at 700.670 kb on - strand at 700.670 kb on - strand at 700.670 kb on - strand at 700.670 kb on - strand at 700.670 kb on - strand at 700.827 kb on + strand, within fimG at 700.828 kb on - strand, within fimG at 700.828 kb on - strand, within fimG at 700.828 kb on - strand, within fimG at 700.833 kb on + strand, within fimG at 700.865 kb on + strand, within fimG at 700.866 kb on - strand, within fimG at 700.868 kb on - strand, within fimG at 700.934 kb on + strand, within fimG at 700.934 kb on + strand, within fimG at 700.934 kb on + strand, within fimG at 700.934 kb on + strand, within fimG at 700.934 kb on + strand, within fimG at 701.134 kb on - strand at 701.138 kb on - strand at 701.180 kb on - strand at 701.210 kb on + strand at 701.255 kb on - strand, within fimF at 701.267 kb on + strand, within fimF at 701.268 kb on - strand, within fimF at 701.268 kb on - strand, within fimF at 701.268 kb on - strand, within fimF at 701.321 kb on + strand, within fimF at 701.321 kb on + strand, within fimF at 701.382 kb on + strand, within fimF at 701.382 kb on + strand, within fimF at 701.387 kb on + strand, within fimF at 701.387 kb on + strand, within fimF at 701.487 kb on - strand, within fimF at 701.589 kb on - strand, within fimF at 701.609 kb on - strand, within fimF at 701.621 kb on + strand, within fimF at 701.621 kb on + strand, within fimF at 701.622 kb on - strand, within fimF
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 698,797 + gntP NOLOHH_03895 0.48 -1.8 698,797 + gntP NOLOHH_03895 0.48 +0.1 698,798 - gntP NOLOHH_03895 0.48 -0.3 698,801 + gntP NOLOHH_03895 0.49 -0.9 698,801 + gntP NOLOHH_03895 0.49 -0.3 698,801 + gntP NOLOHH_03895 0.49 -0.1 698,801 + gntP NOLOHH_03895 0.49 -1.3 698,801 + gntP NOLOHH_03895 0.49 -0.3 698,802 - gntP NOLOHH_03895 0.49 +0.7 698,802 - gntP NOLOHH_03895 0.49 +0.9 698,802 - gntP NOLOHH_03895 0.49 +0.4 698,807 + gntP NOLOHH_03895 0.49 +0.1 698,807 + gntP NOLOHH_03895 0.49 -0.6 698,808 - gntP NOLOHH_03895 0.49 -1.9 698,861 + gntP NOLOHH_03895 0.53 -0.2 698,862 - gntP NOLOHH_03895 0.53 -1.0 698,862 - gntP NOLOHH_03895 0.53 -1.1 698,862 - gntP NOLOHH_03895 0.53 -0.2 698,870 + gntP NOLOHH_03895 0.54 +0.1 698,871 - gntP NOLOHH_03895 0.54 -0.8 698,885 + gntP NOLOHH_03895 0.55 +0.2 698,885 + gntP NOLOHH_03895 0.55 -0.1 698,886 - gntP NOLOHH_03895 0.55 -1.1 698,897 - gntP NOLOHH_03895 0.56 -1.2 698,957 + gntP NOLOHH_03895 0.60 -0.5 698,957 + gntP NOLOHH_03895 0.60 -0.6 698,981 - gntP NOLOHH_03895 0.62 +1.5 699,050 + gntP NOLOHH_03895 0.67 +0.2 699,101 + gntP NOLOHH_03895 0.71 +1.7 699,101 + gntP NOLOHH_03895 0.71 -0.3 699,102 - gntP NOLOHH_03895 0.71 +0.2 699,155 + gntP NOLOHH_03895 0.75 -0.6 699,156 - gntP NOLOHH_03895 0.75 +0.7 699,156 - gntP NOLOHH_03895 0.75 +0.1 699,165 + gntP NOLOHH_03895 0.76 +0.5 699,166 - gntP NOLOHH_03895 0.76 +0.2 699,166 - gntP NOLOHH_03895 0.76 -0.7 699,166 - gntP NOLOHH_03895 0.76 -0.2 699,193 + gntP NOLOHH_03895 0.78 -0.5 699,193 + gntP NOLOHH_03895 0.78 -1.5 699,248 + gntP NOLOHH_03895 0.82 -0.1 699,248 + gntP NOLOHH_03895 0.82 -0.9 699,249 - gntP NOLOHH_03895 0.82 -0.5 699,249 - gntP NOLOHH_03895 0.82 -0.1 699,249 - gntP NOLOHH_03895 0.82 -1.1 699,250 + gntP NOLOHH_03895 0.82 +0.3 699,250 + gntP NOLOHH_03895 0.82 +0.9 699,250 + gntP NOLOHH_03895 0.82 +0.5 699,250 + gntP NOLOHH_03895 0.82 +2.1 699,250 + gntP NOLOHH_03895 0.82 +0.1 699,250 + gntP NOLOHH_03895 0.82 +1.5 699,251 - gntP NOLOHH_03895 0.82 +1.0 699,251 - gntP NOLOHH_03895 0.82 +0.0 699,265 + gntP NOLOHH_03895 0.83 -0.4 699,265 + gntP NOLOHH_03895 0.83 +0.4 699,266 - gntP NOLOHH_03895 0.83 +0.2 699,313 + gntP NOLOHH_03895 0.87 +0.2 699,353 + gntP NOLOHH_03895 0.90 -1.1 699,384 + +0.5 699,384 + +0.7 699,385 - +1.0 699,461 + -0.7 699,461 + +0.1 699,476 + -1.5 699,477 - -0.1 699,489 + -0.9 699,489 + +0.5 699,540 + +0.5 699,685 - -0.4 699,695 - -0.1 699,713 + +0.5 699,741 + -0.9 699,741 + -0.7 699,799 + -1.0 699,854 + fimH NOLOHH_03900 0.13 +0.5 699,860 + fimH NOLOHH_03900 0.14 -0.5 699,880 + fimH NOLOHH_03900 0.16 +0.1 699,906 - fimH NOLOHH_03900 0.19 -0.3 699,987 + fimH NOLOHH_03900 0.28 +0.5 699,987 + fimH NOLOHH_03900 0.28 -0.9 699,988 - fimH NOLOHH_03900 0.28 -0.7 699,988 - fimH NOLOHH_03900 0.28 +1.5 699,988 - fimH NOLOHH_03900 0.28 -1.1 699,988 - fimH NOLOHH_03900 0.28 -1.0 699,988 - fimH NOLOHH_03900 0.28 -0.7 699,988 - fimH NOLOHH_03900 0.28 -0.3 699,990 + fimH NOLOHH_03900 0.28 -1.5 700,018 - fimH NOLOHH_03900 0.31 +0.1 700,103 - fimH NOLOHH_03900 0.41 -0.2 700,120 + fimH NOLOHH_03900 0.43 -1.1 700,121 - fimH NOLOHH_03900 0.43 -1.5 700,121 - fimH NOLOHH_03900 0.43 +0.1 700,129 - fimH NOLOHH_03900 0.44 -0.3 700,133 - fimH NOLOHH_03900 0.44 +0.0 700,164 + fimH NOLOHH_03900 0.48 -0.1 700,164 + fimH NOLOHH_03900 0.48 -0.2 700,164 + fimH NOLOHH_03900 0.48 -0.5 700,164 + fimH NOLOHH_03900 0.48 -0.6 700,164 + fimH NOLOHH_03900 0.48 +0.8 700,164 + fimH NOLOHH_03900 0.48 -0.1 700,165 - fimH NOLOHH_03900 0.48 -1.5 700,165 - fimH NOLOHH_03900 0.48 -0.2 700,165 - fimH NOLOHH_03900 0.48 +0.5 700,165 - fimH NOLOHH_03900 0.48 -0.1 700,186 + fimH NOLOHH_03900 0.50 -1.1 700,199 + fimH NOLOHH_03900 0.51 -0.4 700,213 + fimH NOLOHH_03900 0.53 -0.9 700,289 - fimH NOLOHH_03900 0.61 +0.1 700,333 + fimH NOLOHH_03900 0.66 -1.1 700,333 + fimH NOLOHH_03900 0.66 +1.8 700,334 - fimH NOLOHH_03900 0.66 -1.2 700,334 - fimH NOLOHH_03900 0.66 -1.1 700,334 - fimH NOLOHH_03900 0.66 -1.1 700,342 + fimH NOLOHH_03900 0.67 +0.1 700,343 - fimH NOLOHH_03900 0.67 +0.2 700,344 + fimH NOLOHH_03900 0.68 -0.2 700,344 + fimH NOLOHH_03900 0.68 -0.9 700,344 + fimH NOLOHH_03900 0.68 +1.5 700,345 - fimH NOLOHH_03900 0.68 -0.1 700,345 - fimH NOLOHH_03900 0.68 -0.4 700,349 + fimH NOLOHH_03900 0.68 -0.5 700,371 - fimH NOLOHH_03900 0.71 +1.1 700,410 + fimH NOLOHH_03900 0.75 +0.8 700,410 + fimH NOLOHH_03900 0.75 -0.8 700,410 + fimH NOLOHH_03900 0.75 -0.3 700,411 - fimH NOLOHH_03900 0.75 +0.8 700,411 - fimH NOLOHH_03900 0.75 -1.3 700,411 - fimH NOLOHH_03900 0.75 -2.2 700,418 - fimH NOLOHH_03900 0.76 +0.5 700,508 + fimH NOLOHH_03900 0.86 +0.1 700,508 + fimH NOLOHH_03900 0.86 -1.0 700,509 - fimH NOLOHH_03900 0.86 -1.5 700,509 - fimH NOLOHH_03900 0.86 +0.1 700,512 + fimH NOLOHH_03900 0.86 -0.4 700,512 + fimH NOLOHH_03900 0.86 -1.0 700,512 + fimH NOLOHH_03900 0.86 -1.0 700,513 - fimH NOLOHH_03900 0.86 +1.2 700,513 - fimH NOLOHH_03900 0.86 -1.5 700,538 - fimH NOLOHH_03900 0.89 -0.5 700,550 - -0.4 700,564 + +1.5 700,587 - +0.8 700,607 + -0.0 700,622 - +0.6 700,624 + -0.1 700,625 - +0.5 700,638 - +0.0 700,663 + -2.2 700,663 + -0.8 700,663 + -0.3 700,663 + -1.1 700,664 - +0.5 700,664 - -1.7 700,667 + -0.5 700,668 - -1.1 700,668 - -2.1 700,668 - -0.2 700,668 - +1.8 700,669 + -1.7 700,669 + -0.7 700,669 + -0.8 700,669 + -2.7 700,669 + +0.0 700,670 - -1.4 700,670 - -0.7 700,670 - -0.7 700,670 - +0.3 700,670 - -2.5 700,827 + fimG NOLOHH_03905 0.34 -0.9 700,828 - fimG NOLOHH_03905 0.34 -1.8 700,828 - fimG NOLOHH_03905 0.34 -0.9 700,828 - fimG NOLOHH_03905 0.34 +0.0 700,833 + fimG NOLOHH_03905 0.35 -0.5 700,865 + fimG NOLOHH_03905 0.41 -0.5 700,866 - fimG NOLOHH_03905 0.42 +0.2 700,868 - fimG NOLOHH_03905 0.42 -1.8 700,934 + fimG NOLOHH_03905 0.55 +1.9 700,934 + fimG NOLOHH_03905 0.55 +0.5 700,934 + fimG NOLOHH_03905 0.55 -1.5 700,934 + fimG NOLOHH_03905 0.55 -0.1 700,934 + fimG NOLOHH_03905 0.55 +0.1 701,134 - +0.3 701,138 - -1.2 701,180 - -0.5 701,210 + -1.7 701,255 - fimF NOLOHH_03910 0.16 +0.5 701,267 + fimF NOLOHH_03910 0.18 -0.3 701,268 - fimF NOLOHH_03910 0.18 +0.4 701,268 - fimF NOLOHH_03910 0.18 -2.1 701,268 - fimF NOLOHH_03910 0.18 -1.4 701,321 + fimF NOLOHH_03910 0.28 +0.5 701,321 + fimF NOLOHH_03910 0.28 +1.5 701,382 + fimF NOLOHH_03910 0.40 -1.1 701,382 + fimF NOLOHH_03910 0.40 +0.5 701,387 + fimF NOLOHH_03910 0.40 -0.9 701,387 + fimF NOLOHH_03910 0.40 -1.2 701,487 - fimF NOLOHH_03910 0.59 -1.5 701,589 - fimF NOLOHH_03910 0.79 +0.6 701,609 - fimF NOLOHH_03910 0.82 -1.1 701,621 + fimF NOLOHH_03910 0.85 -1.5 701,621 + fimF NOLOHH_03910 0.85 -0.8 701,622 - fimF NOLOHH_03910 0.85 -1.5
Or see this region's nucleotide sequence