Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04206

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04204 and OHPLBJKB_04205 are separated by 38 nucleotidesOHPLBJKB_04205 and OHPLBJKB_04206 overlap by 1 nucleotidesOHPLBJKB_04206 and OHPLBJKB_04207 are separated by 189 nucleotides OHPLBJKB_04204: OHPLBJKB_04204 - Trk system potassium uptake protein TrkH, at 4,421,143 to 4,422,594 _04204 OHPLBJKB_04205: OHPLBJKB_04205 - IMPACT family member YigZ, at 4,422,633 to 4,423,247 _04205 OHPLBJKB_04206: OHPLBJKB_04206 - Xaa-Pro dipeptidase, at 4,423,247 to 4,424,578 _04206 OHPLBJKB_04207: OHPLBJKB_04207 - Fatty acid oxidation complex subunit alpha, at 4,424,768 to 4,426,957 _04207 Position (kb) 4423 4424 4425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4422.441 kb on + strand, within OHPLBJKB_04204at 4422.441 kb on + strand, within OHPLBJKB_04204at 4422.547 kb on + strandat 4422.609 kb on + strandat 4422.610 kb on - strandat 4422.610 kb on - strandat 4422.610 kb on - strandat 4422.635 kb on - strandat 4422.812 kb on + strand, within OHPLBJKB_04205at 4422.814 kb on + strand, within OHPLBJKB_04205at 4422.814 kb on + strand, within OHPLBJKB_04205at 4422.814 kb on + strand, within OHPLBJKB_04205at 4422.815 kb on - strand, within OHPLBJKB_04205at 4422.830 kb on + strand, within OHPLBJKB_04205at 4422.830 kb on + strand, within OHPLBJKB_04205at 4422.831 kb on - strand, within OHPLBJKB_04205at 4422.831 kb on - strand, within OHPLBJKB_04205at 4422.831 kb on - strand, within OHPLBJKB_04205at 4422.831 kb on - strand, within OHPLBJKB_04205at 4422.831 kb on - strand, within OHPLBJKB_04205at 4422.831 kb on - strand, within OHPLBJKB_04205at 4422.832 kb on + strand, within OHPLBJKB_04205at 4422.832 kb on + strand, within OHPLBJKB_04205at 4422.833 kb on - strand, within OHPLBJKB_04205at 4422.930 kb on + strand, within OHPLBJKB_04205at 4422.931 kb on - strand, within OHPLBJKB_04205at 4422.941 kb on - strand, within OHPLBJKB_04205at 4422.941 kb on - strand, within OHPLBJKB_04205at 4422.951 kb on + strand, within OHPLBJKB_04205at 4422.988 kb on - strand, within OHPLBJKB_04205at 4423.179 kb on + strand, within OHPLBJKB_04205at 4423.233 kb on + strandat 4423.416 kb on + strand, within OHPLBJKB_04206at 4423.416 kb on + strand, within OHPLBJKB_04206at 4423.416 kb on + strand, within OHPLBJKB_04206at 4423.416 kb on + strand, within OHPLBJKB_04206at 4423.416 kb on + strand, within OHPLBJKB_04206at 4423.417 kb on - strand, within OHPLBJKB_04206at 4423.417 kb on - strand, within OHPLBJKB_04206at 4423.417 kb on - strand, within OHPLBJKB_04206at 4423.417 kb on - strand, within OHPLBJKB_04206at 4423.417 kb on - strand, within OHPLBJKB_04206at 4423.417 kb on - strand, within OHPLBJKB_04206at 4423.436 kb on + strand, within OHPLBJKB_04206at 4423.526 kb on - strand, within OHPLBJKB_04206at 4423.582 kb on + strand, within OHPLBJKB_04206at 4423.583 kb on - strand, within OHPLBJKB_04206at 4423.583 kb on - strand, within OHPLBJKB_04206at 4423.627 kb on + strand, within OHPLBJKB_04206at 4423.648 kb on + strand, within OHPLBJKB_04206at 4423.648 kb on + strand, within OHPLBJKB_04206at 4423.648 kb on + strand, within OHPLBJKB_04206at 4423.649 kb on - strand, within OHPLBJKB_04206at 4423.649 kb on - strand, within OHPLBJKB_04206at 4423.689 kb on + strand, within OHPLBJKB_04206at 4423.698 kb on + strand, within OHPLBJKB_04206at 4423.698 kb on + strand, within OHPLBJKB_04206at 4423.699 kb on - strand, within OHPLBJKB_04206at 4423.699 kb on - strand, within OHPLBJKB_04206at 4423.699 kb on - strand, within OHPLBJKB_04206at 4423.699 kb on - strand, within OHPLBJKB_04206at 4423.699 kb on - strand, within OHPLBJKB_04206at 4423.749 kb on - strand, within OHPLBJKB_04206at 4423.749 kb on - strand, within OHPLBJKB_04206at 4423.749 kb on - strand, within OHPLBJKB_04206at 4423.825 kb on + strand, within OHPLBJKB_04206at 4423.826 kb on - strand, within OHPLBJKB_04206at 4423.827 kb on + strand, within OHPLBJKB_04206at 4423.827 kb on + strand, within OHPLBJKB_04206at 4423.827 kb on + strand, within OHPLBJKB_04206at 4423.828 kb on - strand, within OHPLBJKB_04206at 4423.894 kb on - strand, within OHPLBJKB_04206at 4423.894 kb on - strand, within OHPLBJKB_04206at 4423.894 kb on - strand, within OHPLBJKB_04206at 4423.939 kb on - strand, within OHPLBJKB_04206at 4423.939 kb on - strand, within OHPLBJKB_04206at 4423.939 kb on - strand, within OHPLBJKB_04206at 4423.939 kb on - strand, within OHPLBJKB_04206at 4423.943 kb on + strand, within OHPLBJKB_04206at 4423.943 kb on + strand, within OHPLBJKB_04206at 4423.944 kb on - strand, within OHPLBJKB_04206at 4423.944 kb on - strand, within OHPLBJKB_04206at 4423.977 kb on + strand, within OHPLBJKB_04206at 4423.977 kb on + strand, within OHPLBJKB_04206at 4424.071 kb on + strand, within OHPLBJKB_04206at 4424.071 kb on + strand, within OHPLBJKB_04206at 4424.071 kb on + strand, within OHPLBJKB_04206at 4424.072 kb on - strand, within OHPLBJKB_04206at 4424.085 kb on + strand, within OHPLBJKB_04206at 4424.109 kb on + strand, within OHPLBJKB_04206at 4424.110 kb on - strand, within OHPLBJKB_04206at 4424.110 kb on - strand, within OHPLBJKB_04206at 4424.194 kb on + strand, within OHPLBJKB_04206at 4424.331 kb on + strand, within OHPLBJKB_04206at 4424.332 kb on - strand, within OHPLBJKB_04206at 4424.332 kb on - strand, within OHPLBJKB_04206at 4424.428 kb on + strand, within OHPLBJKB_04206at 4424.483 kb on - strandat 4424.486 kb on + strandat 4424.486 kb on + strandat 4424.487 kb on - strandat 4424.534 kb on + strandat 4424.539 kb on + strandat 4424.539 kb on + strandat 4424.539 kb on + strandat 4424.539 kb on + strandat 4424.539 kb on + strandat 4424.539 kb on + strandat 4424.540 kb on - strandat 4424.540 kb on - strandat 4424.540 kb on - strandat 4424.540 kb on - strandat 4424.543 kb on + strandat 4424.543 kb on + strandat 4424.543 kb on + strandat 4424.543 kb on + strandat 4424.543 kb on + strandat 4424.543 kb on + strandat 4424.544 kb on - strandat 4424.544 kb on - strandat 4424.544 kb on - strandat 4424.544 kb on - strandat 4424.544 kb on - strandat 4424.546 kb on - strandat 4424.605 kb on + strandat 4424.605 kb on + strandat 4424.606 kb on - strandat 4424.606 kb on - strandat 4424.606 kb on - strandat 4424.606 kb on - strandat 4424.620 kb on + strandat 4424.774 kb on + strandat 4424.774 kb on + strandat 4424.774 kb on + strandat 4424.774 kb on + strandat 4424.775 kb on - strandat 4424.792 kb on + strandat 4424.793 kb on - strandat 4424.793 kb on - strandat 4424.829 kb on + strandat 4424.829 kb on + strandat 4424.830 kb on - strandat 4424.830 kb on - strandat 4424.851 kb on + strandat 4424.851 kb on + strandat 4424.854 kb on + strandat 4424.938 kb on - strandat 4424.938 kb on - strandat 4424.938 kb on - strandat 4424.938 kb on - strandat 4425.018 kb on + strand, within OHPLBJKB_04207at 4425.018 kb on + strand, within OHPLBJKB_04207at 4425.019 kb on - strand, within OHPLBJKB_04207at 4425.019 kb on - strand, within OHPLBJKB_04207at 4425.019 kb on - strand, within OHPLBJKB_04207at 4425.019 kb on - strand, within OHPLBJKB_04207at 4425.101 kb on + strand, within OHPLBJKB_04207at 4425.101 kb on + strand, within OHPLBJKB_04207at 4425.222 kb on + strand, within OHPLBJKB_04207at 4425.222 kb on + strand, within OHPLBJKB_04207at 4425.222 kb on + strand, within OHPLBJKB_04207at 4425.223 kb on - strand, within OHPLBJKB_04207at 4425.226 kb on + strand, within OHPLBJKB_04207at 4425.226 kb on + strand, within OHPLBJKB_04207at 4425.226 kb on + strand, within OHPLBJKB_04207at 4425.226 kb on + strand, within OHPLBJKB_04207at 4425.226 kb on + strand, within OHPLBJKB_04207at 4425.227 kb on - strand, within OHPLBJKB_04207at 4425.227 kb on - strand, within OHPLBJKB_04207at 4425.227 kb on - strand, within OHPLBJKB_04207at 4425.235 kb on + strand, within OHPLBJKB_04207at 4425.235 kb on + strand, within OHPLBJKB_04207at 4425.235 kb on + strand, within OHPLBJKB_04207at 4425.235 kb on + strand, within OHPLBJKB_04207at 4425.236 kb on - strand, within OHPLBJKB_04207at 4425.327 kb on + strand, within OHPLBJKB_04207

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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4,422,441 + OHPLBJKB_04204 0.89 -0.6
4,422,441 + OHPLBJKB_04204 0.89 +5.9
4,422,547 + +0.5
4,422,609 + +0.8
4,422,610 - -0.2
4,422,610 - -2.3
4,422,610 - -1.0
4,422,635 - -0.7
4,422,812 + OHPLBJKB_04205 0.29 -2.6
4,422,814 + OHPLBJKB_04205 0.29 -0.4
4,422,814 + OHPLBJKB_04205 0.29 -0.8
4,422,814 + OHPLBJKB_04205 0.29 -1.8
4,422,815 - OHPLBJKB_04205 0.30 -0.1
4,422,830 + OHPLBJKB_04205 0.32 +2.6
4,422,830 + OHPLBJKB_04205 0.32 -0.2
4,422,831 - OHPLBJKB_04205 0.32 +0.9
4,422,831 - OHPLBJKB_04205 0.32 +1.1
4,422,831 - OHPLBJKB_04205 0.32 +0.5
4,422,831 - OHPLBJKB_04205 0.32 -1.1
4,422,831 - OHPLBJKB_04205 0.32 +0.1
4,422,831 - OHPLBJKB_04205 0.32 -0.4
4,422,832 + OHPLBJKB_04205 0.32 -1.9
4,422,832 + OHPLBJKB_04205 0.32 -1.2
4,422,833 - OHPLBJKB_04205 0.33 +0.2
4,422,930 + OHPLBJKB_04205 0.48 +0.4
4,422,931 - OHPLBJKB_04205 0.48 -2.7
4,422,941 - OHPLBJKB_04205 0.50 -2.2
4,422,941 - OHPLBJKB_04205 0.50 +0.2
4,422,951 + OHPLBJKB_04205 0.52 -2.3
4,422,988 - OHPLBJKB_04205 0.58 -1.8
4,423,179 + OHPLBJKB_04205 0.89 +1.2
4,423,233 + +0.3
4,423,416 + OHPLBJKB_04206 0.13 -2.1
4,423,416 + OHPLBJKB_04206 0.13 -0.2
4,423,416 + OHPLBJKB_04206 0.13 -0.2
4,423,416 + OHPLBJKB_04206 0.13 +0.7
4,423,416 + OHPLBJKB_04206 0.13 -1.0
4,423,417 - OHPLBJKB_04206 0.13 -1.8
4,423,417 - OHPLBJKB_04206 0.13 +1.2
4,423,417 - OHPLBJKB_04206 0.13 -2.6
4,423,417 - OHPLBJKB_04206 0.13 -0.5
4,423,417 - OHPLBJKB_04206 0.13 -1.7
4,423,417 - OHPLBJKB_04206 0.13 -1.5
4,423,436 + OHPLBJKB_04206 0.14 -2.0
4,423,526 - OHPLBJKB_04206 0.21 +0.2
4,423,582 + OHPLBJKB_04206 0.25 -2.6
4,423,583 - OHPLBJKB_04206 0.25 +0.2
4,423,583 - OHPLBJKB_04206 0.25 -2.0
4,423,627 + OHPLBJKB_04206 0.29 +1.0
4,423,648 + OHPLBJKB_04206 0.30 -0.9
4,423,648 + OHPLBJKB_04206 0.30 -1.8
4,423,648 + OHPLBJKB_04206 0.30 -0.8
4,423,649 - OHPLBJKB_04206 0.30 -1.3
4,423,649 - OHPLBJKB_04206 0.30 -1.7
4,423,689 + OHPLBJKB_04206 0.33 -1.3
4,423,698 + OHPLBJKB_04206 0.34 -1.6
4,423,698 + OHPLBJKB_04206 0.34 +0.5
4,423,699 - OHPLBJKB_04206 0.34 -0.3
4,423,699 - OHPLBJKB_04206 0.34 +0.6
4,423,699 - OHPLBJKB_04206 0.34 -0.2
4,423,699 - OHPLBJKB_04206 0.34 +1.6
4,423,699 - OHPLBJKB_04206 0.34 -0.2
4,423,749 - OHPLBJKB_04206 0.38 -2.0
4,423,749 - OHPLBJKB_04206 0.38 -0.0
4,423,749 - OHPLBJKB_04206 0.38 +0.7
4,423,825 + OHPLBJKB_04206 0.43 -1.6
4,423,826 - OHPLBJKB_04206 0.43 +0.2
4,423,827 + OHPLBJKB_04206 0.44 +0.7
4,423,827 + OHPLBJKB_04206 0.44 -0.3
4,423,827 + OHPLBJKB_04206 0.44 -0.0
4,423,828 - OHPLBJKB_04206 0.44 -3.7
4,423,894 - OHPLBJKB_04206 0.49 +0.2
4,423,894 - OHPLBJKB_04206 0.49 +0.6
4,423,894 - OHPLBJKB_04206 0.49 +1.0
4,423,939 - OHPLBJKB_04206 0.52 -1.3
4,423,939 - OHPLBJKB_04206 0.52 -1.2
4,423,939 - OHPLBJKB_04206 0.52 +1.4
4,423,939 - OHPLBJKB_04206 0.52 +0.2
4,423,943 + OHPLBJKB_04206 0.52 -2.6
4,423,943 + OHPLBJKB_04206 0.52 +0.7
4,423,944 - OHPLBJKB_04206 0.52 -1.1
4,423,944 - OHPLBJKB_04206 0.52 -1.4
4,423,977 + OHPLBJKB_04206 0.55 +1.2
4,423,977 + OHPLBJKB_04206 0.55 -0.6
4,424,071 + OHPLBJKB_04206 0.62 -2.1
4,424,071 + OHPLBJKB_04206 0.62 +2.7
4,424,071 + OHPLBJKB_04206 0.62 -2.9
4,424,072 - OHPLBJKB_04206 0.62 +1.6
4,424,085 + OHPLBJKB_04206 0.63 -0.7
4,424,109 + OHPLBJKB_04206 0.65 -0.8
4,424,110 - OHPLBJKB_04206 0.65 -2.5
4,424,110 - OHPLBJKB_04206 0.65 -2.5
4,424,194 + OHPLBJKB_04206 0.71 +0.3
4,424,331 + OHPLBJKB_04206 0.81 -1.9
4,424,332 - OHPLBJKB_04206 0.81 +0.4
4,424,332 - OHPLBJKB_04206 0.81 -1.4
4,424,428 + OHPLBJKB_04206 0.89 +1.0
4,424,483 - -1.4
4,424,486 + -1.3
4,424,486 + -1.1
4,424,487 - -1.1
4,424,534 + -0.1
4,424,539 + +0.9
4,424,539 + -1.8
4,424,539 + +1.6
4,424,539 + -1.4
4,424,539 + -1.5
4,424,539 + +0.9
4,424,540 - -1.6
4,424,540 - -1.8
4,424,540 - +0.5
4,424,540 - +1.8
4,424,543 + +0.8
4,424,543 + +0.7
4,424,543 + +0.2
4,424,543 + -1.0
4,424,543 + -0.5
4,424,543 + -0.9
4,424,544 - -0.5
4,424,544 - +1.5
4,424,544 - -1.4
4,424,544 - +1.2
4,424,544 - +1.1
4,424,546 - +0.3
4,424,605 + -1.1
4,424,605 + -0.8
4,424,606 - +0.2
4,424,606 - -1.3
4,424,606 - -0.3
4,424,606 - -1.7
4,424,620 + +1.7
4,424,774 + +1.3
4,424,774 + +0.1
4,424,774 + +0.8
4,424,774 + -0.6
4,424,775 - -0.5
4,424,792 + +0.2
4,424,793 - -1.8
4,424,793 - +0.4
4,424,829 + -0.4
4,424,829 + +1.8
4,424,830 - -0.3
4,424,830 - +0.1
4,424,851 + +1.1
4,424,851 + +0.7
4,424,854 + +0.5
4,424,938 - -2.7
4,424,938 - +0.1
4,424,938 - +3.3
4,424,938 - -2.1
4,425,018 + OHPLBJKB_04207 0.11 -2.1
4,425,018 + OHPLBJKB_04207 0.11 -0.4
4,425,019 - OHPLBJKB_04207 0.11 -0.6
4,425,019 - OHPLBJKB_04207 0.11 -1.0
4,425,019 - OHPLBJKB_04207 0.11 -1.7
4,425,019 - OHPLBJKB_04207 0.11 +1.0
4,425,101 + OHPLBJKB_04207 0.15 -1.9
4,425,101 + OHPLBJKB_04207 0.15 -1.4
4,425,222 + OHPLBJKB_04207 0.21 +0.2
4,425,222 + OHPLBJKB_04207 0.21 +3.5
4,425,222 + OHPLBJKB_04207 0.21 +1.0
4,425,223 - OHPLBJKB_04207 0.21 +2.1
4,425,226 + OHPLBJKB_04207 0.21 +0.2
4,425,226 + OHPLBJKB_04207 0.21 +0.0
4,425,226 + OHPLBJKB_04207 0.21 -1.7
4,425,226 + OHPLBJKB_04207 0.21 +0.5
4,425,226 + OHPLBJKB_04207 0.21 +0.5
4,425,227 - OHPLBJKB_04207 0.21 -0.5
4,425,227 - OHPLBJKB_04207 0.21 -3.3
4,425,227 - OHPLBJKB_04207 0.21 +1.6
4,425,235 + OHPLBJKB_04207 0.21 +0.6
4,425,235 + OHPLBJKB_04207 0.21 +0.5
4,425,235 + OHPLBJKB_04207 0.21 +0.4
4,425,235 + OHPLBJKB_04207 0.21 -0.1
4,425,236 - OHPLBJKB_04207 0.21 +0.2
4,425,327 + OHPLBJKB_04207 0.26 -2.5

Or see this region's nucleotide sequence