Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04114

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04112 and OHPLBJKB_04113 are separated by 183 nucleotidesOHPLBJKB_04113 and OHPLBJKB_04114 are separated by 6 nucleotidesOHPLBJKB_04114 and OHPLBJKB_04115 are separated by 54 nucleotidesOHPLBJKB_04115 and OHPLBJKB_04116 are separated by 202 nucleotides OHPLBJKB_04112: OHPLBJKB_04112 - Met repressor, at 4,328,971 to 4,329,288 _04112 OHPLBJKB_04113: OHPLBJKB_04113 - hypothetical protein, at 4,329,472 to 4,330,080 _04113 OHPLBJKB_04114: OHPLBJKB_04114 - hypothetical protein, at 4,330,087 to 4,330,710 _04114 OHPLBJKB_04115: OHPLBJKB_04115 - 50S ribosomal protein L31, at 4,330,765 to 4,330,977 _04115 OHPLBJKB_04116: OHPLBJKB_04116 - 'Primosomal protein N'' transl_table=11, at 4,331,180 to 4,333,378 _04116 Position (kb) 4330 4331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4329.283 kb on + strandat 4329.286 kb on + strandat 4329.287 kb on - strandat 4329.329 kb on + strandat 4329.344 kb on + strandat 4329.352 kb on - strandat 4329.454 kb on - strandat 4329.455 kb on + strandat 4329.455 kb on + strandat 4329.455 kb on + strandat 4329.455 kb on + strandat 4329.455 kb on + strandat 4329.455 kb on + strandat 4329.456 kb on - strandat 4329.456 kb on - strandat 4329.456 kb on - strandat 4329.467 kb on + strandat 4329.467 kb on + strandat 4329.468 kb on - strandat 4329.468 kb on - strandat 4329.468 kb on - strandat 4329.468 kb on - strandat 4329.468 kb on - strandat 4329.468 kb on - strandat 4329.468 kb on - strandat 4329.472 kb on - strandat 4329.513 kb on - strandat 4329.579 kb on + strand, within OHPLBJKB_04113at 4329.579 kb on + strand, within OHPLBJKB_04113at 4329.613 kb on - strand, within OHPLBJKB_04113at 4329.613 kb on - strand, within OHPLBJKB_04113at 4329.624 kb on + strand, within OHPLBJKB_04113at 4329.682 kb on + strand, within OHPLBJKB_04113at 4329.682 kb on + strand, within OHPLBJKB_04113at 4329.683 kb on - strand, within OHPLBJKB_04113at 4329.683 kb on - strand, within OHPLBJKB_04113at 4329.683 kb on - strand, within OHPLBJKB_04113at 4329.727 kb on + strand, within OHPLBJKB_04113at 4329.727 kb on + strand, within OHPLBJKB_04113at 4329.727 kb on + strand, within OHPLBJKB_04113at 4329.727 kb on + strand, within OHPLBJKB_04113at 4329.727 kb on + strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.728 kb on - strand, within OHPLBJKB_04113at 4329.807 kb on + strand, within OHPLBJKB_04113at 4329.850 kb on + strand, within OHPLBJKB_04113at 4329.850 kb on + strand, within OHPLBJKB_04113at 4329.851 kb on - strand, within OHPLBJKB_04113at 4329.851 kb on - strand, within OHPLBJKB_04113at 4329.957 kb on + strand, within OHPLBJKB_04113at 4329.958 kb on - strand, within OHPLBJKB_04113at 4329.984 kb on + strand, within OHPLBJKB_04113at 4329.985 kb on - strand, within OHPLBJKB_04113at 4330.004 kb on + strand, within OHPLBJKB_04113at 4330.004 kb on + strand, within OHPLBJKB_04113at 4330.005 kb on - strand, within OHPLBJKB_04113at 4330.005 kb on - strand, within OHPLBJKB_04113at 4330.005 kb on - strand, within OHPLBJKB_04113at 4330.079 kb on - strandat 4330.128 kb on + strandat 4330.129 kb on - strandat 4330.188 kb on + strand, within OHPLBJKB_04114at 4330.188 kb on + strand, within OHPLBJKB_04114at 4330.189 kb on - strand, within OHPLBJKB_04114at 4330.189 kb on - strand, within OHPLBJKB_04114at 4330.189 kb on - strand, within OHPLBJKB_04114at 4330.191 kb on + strand, within OHPLBJKB_04114at 4330.191 kb on + strand, within OHPLBJKB_04114at 4330.191 kb on + strand, within OHPLBJKB_04114at 4330.192 kb on - strand, within OHPLBJKB_04114at 4330.192 kb on - strand, within OHPLBJKB_04114at 4330.192 kb on - strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.195 kb on + strand, within OHPLBJKB_04114at 4330.196 kb on - strand, within OHPLBJKB_04114at 4330.198 kb on - strand, within OHPLBJKB_04114at 4330.298 kb on - strand, within OHPLBJKB_04114at 4330.327 kb on + strand, within OHPLBJKB_04114at 4330.344 kb on + strand, within OHPLBJKB_04114at 4330.391 kb on + strand, within OHPLBJKB_04114at 4330.391 kb on + strand, within OHPLBJKB_04114at 4330.392 kb on - strand, within OHPLBJKB_04114at 4330.430 kb on - strand, within OHPLBJKB_04114at 4330.430 kb on - strand, within OHPLBJKB_04114at 4330.450 kb on - strand, within OHPLBJKB_04114at 4330.464 kb on + strand, within OHPLBJKB_04114at 4330.465 kb on - strand, within OHPLBJKB_04114at 4330.465 kb on - strand, within OHPLBJKB_04114at 4330.487 kb on + strand, within OHPLBJKB_04114at 4330.487 kb on + strand, within OHPLBJKB_04114at 4330.487 kb on + strand, within OHPLBJKB_04114at 4330.488 kb on - strand, within OHPLBJKB_04114at 4330.488 kb on - strand, within OHPLBJKB_04114at 4330.493 kb on + strand, within OHPLBJKB_04114at 4330.493 kb on + strand, within OHPLBJKB_04114at 4330.497 kb on + strand, within OHPLBJKB_04114at 4330.497 kb on + strand, within OHPLBJKB_04114at 4330.498 kb on - strand, within OHPLBJKB_04114at 4330.558 kb on + strand, within OHPLBJKB_04114at 4330.558 kb on + strand, within OHPLBJKB_04114at 4330.558 kb on + strand, within OHPLBJKB_04114at 4330.559 kb on - strand, within OHPLBJKB_04114at 4330.559 kb on - strand, within OHPLBJKB_04114at 4330.559 kb on - strand, within OHPLBJKB_04114at 4330.577 kb on - strand, within OHPLBJKB_04114at 4330.608 kb on + strand, within OHPLBJKB_04114at 4330.608 kb on + strand, within OHPLBJKB_04114at 4330.609 kb on - strand, within OHPLBJKB_04114at 4330.615 kb on - strand, within OHPLBJKB_04114at 4330.617 kb on + strand, within OHPLBJKB_04114at 4330.618 kb on - strand, within OHPLBJKB_04114at 4330.618 kb on - strand, within OHPLBJKB_04114at 4330.695 kb on - strandat 4331.048 kb on - strandat 4331.143 kb on + strandat 4331.143 kb on + strandat 4331.144 kb on - strandat 4331.144 kb on - strandat 4331.144 kb on - strandat 4331.144 kb on - strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.145 kb on + strandat 4331.148 kb on + strandat 4331.148 kb on + strandat 4331.148 kb on + strandat 4331.149 kb on - strandat 4331.149 kb on - strandat 4331.179 kb on + strandat 4331.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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4,329,283 + -2.4
4,329,286 + -0.0
4,329,287 - -1.2
4,329,329 + +0.7
4,329,344 + -0.2
4,329,352 - +0.5
4,329,454 - +1.0
4,329,455 + -1.1
4,329,455 + -1.1
4,329,455 + +1.3
4,329,455 + -0.8
4,329,455 + +1.6
4,329,455 + +0.6
4,329,456 - +0.3
4,329,456 - -1.8
4,329,456 - +0.1
4,329,467 + -1.0
4,329,467 + -0.8
4,329,468 - +0.5
4,329,468 - +0.4
4,329,468 - -0.6
4,329,468 - +0.8
4,329,468 - -2.4
4,329,468 - +1.3
4,329,468 - -1.2
4,329,472 - -0.4
4,329,513 - -0.3
4,329,579 + OHPLBJKB_04113 0.18 -2.1
4,329,579 + OHPLBJKB_04113 0.18 -2.7
4,329,613 - OHPLBJKB_04113 0.23 -0.5
4,329,613 - OHPLBJKB_04113 0.23 -1.1
4,329,624 + OHPLBJKB_04113 0.25 +0.9
4,329,682 + OHPLBJKB_04113 0.34 -0.6
4,329,682 + OHPLBJKB_04113 0.34 -1.7
4,329,683 - OHPLBJKB_04113 0.35 -1.7
4,329,683 - OHPLBJKB_04113 0.35 +1.0
4,329,683 - OHPLBJKB_04113 0.35 +2.9
4,329,727 + OHPLBJKB_04113 0.42 +1.3
4,329,727 + OHPLBJKB_04113 0.42 -0.3
4,329,727 + OHPLBJKB_04113 0.42 +2.2
4,329,727 + OHPLBJKB_04113 0.42 +0.5
4,329,727 + OHPLBJKB_04113 0.42 +0.7
4,329,728 - OHPLBJKB_04113 0.42 -1.3
4,329,728 - OHPLBJKB_04113 0.42 +0.8
4,329,728 - OHPLBJKB_04113 0.42 +1.8
4,329,728 - OHPLBJKB_04113 0.42 -1.5
4,329,728 - OHPLBJKB_04113 0.42 -0.3
4,329,728 - OHPLBJKB_04113 0.42 -2.5
4,329,728 - OHPLBJKB_04113 0.42 -0.2
4,329,728 - OHPLBJKB_04113 0.42 +0.2
4,329,728 - OHPLBJKB_04113 0.42 +0.2
4,329,807 + OHPLBJKB_04113 0.55 -1.1
4,329,850 + OHPLBJKB_04113 0.62 -0.7
4,329,850 + OHPLBJKB_04113 0.62 -0.3
4,329,851 - OHPLBJKB_04113 0.62 +1.4
4,329,851 - OHPLBJKB_04113 0.62 -0.3
4,329,957 + OHPLBJKB_04113 0.80 +0.6
4,329,958 - OHPLBJKB_04113 0.80 +1.0
4,329,984 + OHPLBJKB_04113 0.84 +1.0
4,329,985 - OHPLBJKB_04113 0.84 +0.1
4,330,004 + OHPLBJKB_04113 0.87 +1.2
4,330,004 + OHPLBJKB_04113 0.87 +1.0
4,330,005 - OHPLBJKB_04113 0.88 -1.3
4,330,005 - OHPLBJKB_04113 0.88 -1.6
4,330,005 - OHPLBJKB_04113 0.88 -0.6
4,330,079 - -2.0
4,330,128 + +1.4
4,330,129 - -0.2
4,330,188 + OHPLBJKB_04114 0.16 -1.3
4,330,188 + OHPLBJKB_04114 0.16 -1.9
4,330,189 - OHPLBJKB_04114 0.16 -1.3
4,330,189 - OHPLBJKB_04114 0.16 -0.5
4,330,189 - OHPLBJKB_04114 0.16 -0.0
4,330,191 + OHPLBJKB_04114 0.17 +0.1
4,330,191 + OHPLBJKB_04114 0.17 -0.6
4,330,191 + OHPLBJKB_04114 0.17 -2.3
4,330,192 - OHPLBJKB_04114 0.17 +0.5
4,330,192 - OHPLBJKB_04114 0.17 +1.5
4,330,192 - OHPLBJKB_04114 0.17 -0.3
4,330,195 + OHPLBJKB_04114 0.17 +0.1
4,330,195 + OHPLBJKB_04114 0.17 -1.3
4,330,195 + OHPLBJKB_04114 0.17 +0.7
4,330,195 + OHPLBJKB_04114 0.17 +0.2
4,330,195 + OHPLBJKB_04114 0.17 +0.0
4,330,195 + OHPLBJKB_04114 0.17 +0.6
4,330,196 - OHPLBJKB_04114 0.17 -2.3
4,330,198 - OHPLBJKB_04114 0.18 -0.4
4,330,298 - OHPLBJKB_04114 0.34 +0.6
4,330,327 + OHPLBJKB_04114 0.38 +0.8
4,330,344 + OHPLBJKB_04114 0.41 -1.5
4,330,391 + OHPLBJKB_04114 0.49 +2.5
4,330,391 + OHPLBJKB_04114 0.49 +0.6
4,330,392 - OHPLBJKB_04114 0.49 -0.8
4,330,430 - OHPLBJKB_04114 0.55 +1.0
4,330,430 - OHPLBJKB_04114 0.55 +1.1
4,330,450 - OHPLBJKB_04114 0.58 +0.0
4,330,464 + OHPLBJKB_04114 0.60 -0.8
4,330,465 - OHPLBJKB_04114 0.61 +0.3
4,330,465 - OHPLBJKB_04114 0.61 -0.1
4,330,487 + OHPLBJKB_04114 0.64 +2.0
4,330,487 + OHPLBJKB_04114 0.64 -3.4
4,330,487 + OHPLBJKB_04114 0.64 -0.5
4,330,488 - OHPLBJKB_04114 0.64 +2.1
4,330,488 - OHPLBJKB_04114 0.64 -0.0
4,330,493 + OHPLBJKB_04114 0.65 +0.3
4,330,493 + OHPLBJKB_04114 0.65 -0.8
4,330,497 + OHPLBJKB_04114 0.66 -0.4
4,330,497 + OHPLBJKB_04114 0.66 -1.6
4,330,498 - OHPLBJKB_04114 0.66 -0.9
4,330,558 + OHPLBJKB_04114 0.75 -0.7
4,330,558 + OHPLBJKB_04114 0.75 -2.3
4,330,558 + OHPLBJKB_04114 0.75 -2.2
4,330,559 - OHPLBJKB_04114 0.76 -1.3
4,330,559 - OHPLBJKB_04114 0.76 +1.4
4,330,559 - OHPLBJKB_04114 0.76 -0.5
4,330,577 - OHPLBJKB_04114 0.79 -0.4
4,330,608 + OHPLBJKB_04114 0.83 -0.5
4,330,608 + OHPLBJKB_04114 0.83 -0.8
4,330,609 - OHPLBJKB_04114 0.84 -1.3
4,330,615 - OHPLBJKB_04114 0.85 +0.2
4,330,617 + OHPLBJKB_04114 0.85 -0.6
4,330,618 - OHPLBJKB_04114 0.85 -0.8
4,330,618 - OHPLBJKB_04114 0.85 -0.6
4,330,695 - +0.7
4,331,048 - +0.0
4,331,143 + +1.6
4,331,143 + +2.1
4,331,144 - +1.8
4,331,144 - -0.4
4,331,144 - +1.5
4,331,144 - -0.4
4,331,145 + -0.2
4,331,145 + +0.3
4,331,145 + +1.3
4,331,145 + -1.0
4,331,145 + -1.3
4,331,148 + -0.0
4,331,148 + +0.6
4,331,148 + -1.6
4,331,149 - -0.8
4,331,149 - -1.2
4,331,179 + -1.6
4,331,179 + -0.3

Or see this region's nucleotide sequence